Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:12 (1208814): wrapper (7.7.26015): starting
00:04:12 (1208814): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:04:12] Arguments: --nthreads 9
[2025-11-23 00:04:12] Threads: 9
[2025-11-23 00:04:12] Checking for CVMFS
[2025-11-23 00:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:04:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:04:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:04:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:04:15] 2.13.3.0 5308 3671 195268 153197 1 212 28815505 32935936 17534 16776704 0 8959376 99.535 10147263 33796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:04:15] CVMFS is ok
[2025-11-23 00:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:04:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:04:15] Further information can be found at the LHC@home message board.
[2025-11-23 00:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:04:15] Checking for apptainer binary...
[2025-11-23 00:04:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:04:15] Running /usr/bin/apptainer --version
[2025-11-23 00:04:15] apptainer version 1.4.4-1.el9
[2025-11-23 00:04:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:04:15] c6-1-24-1.aglt2.org
[2025-11-23 00:04:15] apptainer works
[2025-11-23 00:04:15] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:04:15] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:04:15] Starting ATLAS job with PandaID=6895329898
[2025-11-23 00:04:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 17:35:47]  *** The last 200 lines of the pilot log: ***
[2025-11-24 17:35:47] 2025-11-24 22:35:03,643 | INFO     | monitor loop #9217: job 0:6895329898 is in state 'finished'
[2025-11-24 17:35:47] 2025-11-24 22:35:03,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:35:47] 2025-11-24 22:35:04,582 | INFO     | time since job start (149347s) is within the limit (172800.0s)
[2025-11-24 17:35:47] 2025-11-24 22:35:06,161 | INFO     | monitor loop #9218: job 0:6895329898 is in state 'finished'
[2025-11-24 17:35:47] 2025-11-24 22:35:06,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:35:47] 2025-11-24 22:35:06,590 | INFO     | time since job start (149349s) is within the limit (172800.0s)
[2025-11-24 17:35:47] 2025-11-24 22:35:08,718 | INFO     | PID=1219572 has CPU usage=14.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 17:35:47] 2025-11-24 22:35:08,719 | INFO     | .. there are 25 such processes running
[2025-11-24 17:35:47] 2025-11-24 22:35:08,726 | INFO     | monitor loop #9219: job 0:6895329898 is in state 'finished'
[2025-11-24 17:35:47] 2025-11-24 22:35:08,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:35:47] 2025-11-24 22:35:09,726 | INFO     | time since job start (149352s) is within the limit (172800.0s)
[2025-11-24 17:35:47] 2025-11-24 22:35:11,231 | INFO     | monitor loop #9220: job 0:6895329898 is in state 'finished'
[2025-11-24 17:35:47] 2025-11-24 22:35:11,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:35:47] 2025-11-24 22:35:11,734 | INFO     | time since job start (149354s) is within the limit (172800.0s)
[2025-11-24 17:35:47] 2025-11-24 22:35:13,739 | INFO     | monitor loop #9221: job 0:6895329898 is in state 'finished'
[2025-11-24 17:35:47] 2025-11-24 22:35:13,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:35:47] 2025-11-24 22:35:13,741 | INFO     | time since job start (149356s) is within the limit (172800.0s)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,353 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 17:35:47] 2025-11-24 22:35:14,357 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2917.5398749999995
[2025-11-24 17:35:47] 2025-11-24 22:35:14,366 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895329898/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,367 | INFO     | extracted standard info from prmon json
[2025-11-24 17:35:47] 2025-11-24 22:35:14,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 17:35:47] 2025-11-24 22:35:14,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 17:35:47] 2025-11-24 22:35:14,401 | INFO     | fitting pss+swap vs Time
[2025-11-24 17:35:47] 2025-11-24 22:35:14,404 | INFO     | sum of square deviations: 4531803438872.631
[2025-11-24 17:35:47] 2025-11-24 22:35:14,521 | INFO     | sum of deviations: 21486115494198.344
[2025-11-24 17:35:47] 2025-11-24 22:35:14,522 | INFO     | mean x: 1763949108.976278
[2025-11-24 17:35:47] 2025-11-24 22:35:14,522 | INFO     | mean y: 3067923.229447853
[2025-11-24 17:35:47] 2025-11-24 22:35:14,522 | INFO     | intersect: -8360139967.971807
[2025-11-24 17:35:47] 2025-11-24 22:35:14,535 | INFO     | chi2: 17.99114648210496
[2025-11-24 17:35:47] 2025-11-24 22:35:14,538 | INFO     | sum of square deviations: 4504057939543.407
[2025-11-24 17:35:47] 2025-11-24 22:35:14,696 | INFO     | sum of deviations: 22222933236188.656
[2025-11-24 17:35:47] 2025-11-24 22:35:14,697 | INFO     | mean x: 1763948956.4844263
[2025-11-24 17:35:47] 2025-11-24 22:35:14,697 | INFO     | mean y: 3071971.8463114756
[2025-11-24 17:35:47] 2025-11-24 22:35:14,697 | INFO     | intersect: -8700217465.84949
[2025-11-24 17:35:47] 2025-11-24 22:35:14,699 | INFO     | chi2: 15.55675690852331
[2025-11-24 17:35:47] 2025-11-24 22:35:14,700 | INFO     | current chi2=15.55675690852331 (change=13.531041926666735 %)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,700 | INFO     | right removable region: 2439
[2025-11-24 17:35:47] 2025-11-24 22:35:14,703 | INFO     | sum of square deviations: 4504052009123.408
[2025-11-24 17:35:47] 2025-11-24 22:35:14,811 | INFO     | sum of deviations: 20419302474654.25
[2025-11-24 17:35:47] 2025-11-24 22:35:14,812 | INFO     | mean x: 1763949261.4844263
[2025-11-24 17:35:47] 2025-11-24 22:35:14,812 | INFO     | mean y: 3073785.5717213117
[2025-11-24 17:35:47] 2025-11-24 22:35:14,812 | INFO     | intersect: -7993861739.869409
[2025-11-24 17:35:47] 2025-11-24 22:35:14,814 | INFO     | chi2: 13.610777244451493
[2025-11-24 17:35:47] 2025-11-24 22:35:14,815 | INFO     | current chi2=13.610777244451493 (change=24.347360197475112 %)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,815 | INFO     | left removable region: 10
[2025-11-24 17:35:47] 2025-11-24 22:35:14,818 | INFO     | sum of square deviations: 4443405139289.982
[2025-11-24 17:35:47] 2025-11-24 22:35:14,924 | INFO     | sum of deviations: 20273145204400.895
[2025-11-24 17:35:47] 2025-11-24 22:35:14,924 | INFO     | mean x: 1763949231.0024703
[2025-11-24 17:35:47] 2025-11-24 22:35:14,924 | INFO     | mean y: 3083349.516673528
[2025-11-24 17:35:47] 2025-11-24 22:35:14,924 | INFO     | intersect: -8044978389.687833
[2025-11-24 17:35:47] 2025-11-24 22:35:14,927 | INFO     | chi2: 7.800373399378085
[2025-11-24 17:35:47] 2025-11-24 22:35:14,927 | INFO     | current memory leak: 4.56 B/s (using 2429 data points, chi2=7.80)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | could have reported an average CPU frequency of 2875 MHz (85 samples)
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | ..............................
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | . Timing measurements:
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | . get job = 0 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | . initial setup = 12 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | . payload setup = 77 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,929 | INFO     | . stage-in = 0 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,930 | INFO     | . payload execution = 149165 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,930 | INFO     | . stage-out = 4 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,930 | INFO     | . log creation = 1 s
[2025-11-24 17:35:47] 2025-11-24 22:35:14,930 | INFO     | ..............................
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | 
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | job summary report
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | --------------------------------------------------
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | PanDA job id: 6895329898
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | task id: 47556137
[2025-11-24 17:35:47] 2025-11-24 22:35:15,084 | INFO     | errors: (none)
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | pilot state: finished 
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | transexitcode: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | exeerrorcode: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | exeerrordiag: 
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | exitcode: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | exitmsg: OK
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | cpuconsumptiontime: 247843 s
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | nevents: 1000
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | neventsw: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | pid: 1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | pgrp: 1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | corecount: 9
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | event service: False
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | sizes: {0: 2297979, 1: 2298580, 2: 2298664, 3: 2298891, 4: 2298891, 15: 2298919, 26: 2299075, 36: 2299103, 46: 2299393, 47: 2299421, 149246: 2394531, 149251: 24043
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | --------------------------------------------------
[2025-11-24 17:35:47] 2025-11-24 22:35:15,085 | INFO     | 
[2025-11-24 17:35:47] 2025-11-24 22:35:15,086 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 17:35:47] 2025-11-24 22:35:15,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,154 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | job 6895329898 has completed (purged errors)
[2025-11-24 17:35:47] 2025-11-24 22:35:15,156 | INFO     | overall cleanup function is called
[2025-11-24 17:35:47] 2025-11-24 22:35:16,173 | INFO     | --- collectZombieJob: --- 10, [1256710]
[2025-11-24 17:35:47] 2025-11-24 22:35:16,173 | INFO     | zombie collector waiting for pid 1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:16,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 17:35:47] 2025-11-24 22:35:16,174 | INFO     | collected zombie processes
[2025-11-24 17:35:47] 2025-11-24 22:35:16,174 | INFO     | will attempt to kill all subprocesses of pid=1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:16,514 | INFO     | process IDs to be killed: [1256710] (in reverse order)
[2025-11-24 17:35:47] 2025-11-24 22:35:16,757 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 17:35:47] 2025-11-24 22:35:16,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 17:35:47] 2025-11-24 22:35:16,771 | INFO     | did not find any defunct processes belonging to 1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:16,784 | INFO     | did not find any defunct processes belonging to 1256710
[2025-11-24 17:35:47] 2025-11-24 22:35:16,786 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 17:35:47] 2025-11-24 22:35:16,786 | INFO     | ready for new job
[2025-11-24 17:35:47] 2025-11-24 22:35:16,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 17:35:47] 2025-11-24 22:35:16,796 | INFO     | ***************************************
[2025-11-24 17:35:47] 2025-11-24 22:35:16,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 17:35:47] 2025-11-24 22:35:16,797 | INFO     | ***************************************
[2025-11-24 17:35:47] 2025-11-24 22:35:16,797 | INFO     | 
[2025-11-24 17:35:47] 2025-11-24 22:35:16,800 | INFO     | architecture information:
[2025-11-24 17:35:47] 2025-11-24 22:35:16,800 | INFO     | executing command: cat /etc/os-release
[2025-11-24 17:35:47] 2025-11-24 22:35:16,822 | INFO     | cat /etc/os-release:
[2025-11-24 17:35:47] NAME="CentOS Linux"
[2025-11-24 17:35:47] VERSION="7 (Core)"
[2025-11-24 17:35:47] ID="centos"
[2025-11-24 17:35:47] ID_LIKE="rhel fedora"
[2025-11-24 17:35:47] VERSION_ID="7"
[2025-11-24 17:35:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 17:35:47] ANSI_COLOR="0;31"
[2025-11-24 17:35:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 17:35:47] HOME_URL="https://www.centos.org/"
[2025-11-24 17:35:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 17:35:47] 
[2025-11-24 17:35:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 17:35:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 17:35:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 17:35:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 17:35:47] 
[2025-11-24 17:35:47] 2025-11-24 22:35:16,823 | INFO     | ***************************************
[2025-11-24 17:35:47] 2025-11-24 22:35:17,325 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 17:35:47] 2025-11-24 22:35:17,355 | INFO     | sufficient remaining disk space (71220330496 B)
[2025-11-24 17:35:47] 2025-11-24 22:35:17,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 17:35:47] 2025-11-24 22:35:17,356 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 17:35:47] 2025-11-24 22:35:17,356 | INFO     | update_server=False
[2025-11-24 17:35:47] 2025-11-24 22:35:17,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 17:35:47] 2025-11-24 22:35:17,357 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:35:47] 2025-11-24 22:35:17,357 | INFO     | aborting loop
[2025-11-24 17:35:47] 2025-11-24 22:35:17,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 17:35:47] 2025-11-24 22:35:17,639 | INFO     | all job control threads have been joined
[2025-11-24 17:35:47] 2025-11-24 22:35:18,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 17:35:47] 2025-11-24 22:35:18,362 | INFO     | [job] retrieve thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:18,363 | INFO     | [job] job monitor thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:18,462 | INFO     | all data control threads have been joined
[2025-11-24 17:35:47] 2025-11-24 22:35:18,551 | INFO     | [data] copytool_in thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:18,566 | INFO     | all payload control threads have been joined
[2025-11-24 17:35:47] 2025-11-24 22:35:18,645 | INFO     | [job] control thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:18,737 | INFO     | [payload] failed_post thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,255 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,341 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,366 | INFO     | [data] copytool_out thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,468 | INFO     | [data] control thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,572 | INFO     | [payload] control thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,661 | INFO     | [job] validate thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,758 | INFO     | [payload] validate_post thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:19,775 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:20,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:35:47] 2025-11-24 22:35:21,044 | INFO     | [job] queue monitor thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:22,357 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 17:35:47] 2025-11-24 22:35:25,809 | INFO     | [monitor] cgroup control has ended
[2025-11-24 17:35:47] 2025-11-24 22:35:26,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465011500864)>', '<ExcThread(monitor, started 140464648857344)>']
[2025-11-24 17:35:47] 2025-11-24 22:35:31,193 | INFO     | all workflow threads have been joined
[2025-11-24 17:35:47] 2025-11-24 22:35:31,193 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 17:35:47] 2025-11-24 22:35:31,193 | INFO     | traces error code: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:31,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | INFO     | PID=1219572 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | INFO     | .. there are 25 such processes running
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 17:35:47] 2025-11-24 22:35:47,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 17:35:47] 2025-11-24 22:35:47,272 | INFO     | [monitor] control thread has ended
[2025-11-24 17:35:47] 2025-11-24 22:35:47,423 [wrapper] ==== pilot stdout END ====
[2025-11-24 17:35:47] 2025-11-24 22:35:47,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 17:35:47] 2025-11-24 22:35:47,429 [wrapper] pilotpid: 1219572
[2025-11-24 17:35:47] 2025-11-24 22:35:47,432 [wrapper] Pilot exit status: 0
[2025-11-24 17:35:47] 2025-11-24 22:35:47,447 [wrapper] pandaids: 6895329898
[2025-11-24 17:35:47] 2025-11-24 22:35:47,516 [wrapper] cleanup supervisor_pilot 3313507 1219573
[2025-11-24 17:35:47] 2025-11-24 22:35:47,519 [wrapper] Test setup, not cleaning
[2025-11-24 17:35:47] 2025-11-24 22:35:47,522 [wrapper] apfmon messages muted
[2025-11-24 17:35:47] 2025-11-24 22:35:47,527 [wrapper] ==== wrapper stdout END ====
[2025-11-24 17:35:47] 2025-11-24 22:35:47,530 [wrapper] ==== wrapper stderr END ====
[2025-11-24 17:35:47]  *** Error codes and diagnostics ***
[2025-11-24 17:35:47]     "exeErrorCode": 0,
[2025-11-24 17:35:47]     "exeErrorDiag": "",
[2025-11-24 17:35:47]     "pilotErrorCode": 0,
[2025-11-24 17:35:47]     "pilotErrorDiag": "",
[2025-11-24 17:35:47]  *** Listing of results directory ***
[2025-11-24 17:35:47] total 1349368
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:48 pilot3.tar.gz
[2025-11-24 17:35:47] -rwx------. 1 boincer umatlas     36292 Nov 21 14:58 runpilot2-wrapper.sh
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:58 queuedata.json
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 17:35:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:04 run_atlas
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:04 job.xml
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas 412035855 Nov 23 00:04 EVNT.47483658._000127.pool.root.1
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-24 17:35:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:04 shared
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:04 input.tar.gz
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:04 boinc_lockfile
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:04 pandaJob.out
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas        57 Nov 23 00:04 setup.sh.local
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas    989784 Nov 23 00:05 agis_schedconf.cvmfs.json
[2025-11-24 17:35:47] drwx------. 5 boincer umatlas      4096 Nov 23 00:05 pilot3
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:27 boinc_task_state.xml
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas      6842 Nov 24 17:31 init_data.xml
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas 920625233 Nov 24 17:34 HITS.47556137._001264.pool.root.1
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas      1058 Nov 24 17:34 memory_monitor_summary.json
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas   3358691 Nov 24 17:34 log.47556137._001264.job.log.tgz.1
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas        95 Nov 24 17:35 pilot_heartbeat.json
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas      8629 Nov 24 17:35 heartbeat.json
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 17:35 boinc_mmap_file
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas        29 Nov 24 17:35 wrapper_checkpoint.txt
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas       823 Nov 24 17:35 pilotlog.txt
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas  19230582 Nov 24 17:35 log.47556137._001264.job.log.1
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas       353 Nov 24 17:35 output.list
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas       620 Nov 24 17:35 runtime_log
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas  22609920 Nov 24 17:35 result.tar.gz
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas       664 Nov 24 17:35 TPpKDmtRmg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8gJKDmd8EJOo.diag
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 17:35 runtime_log.err
[2025-11-24 17:35:47] -rw-r--r--. 1 boincer umatlas     21898 Nov 24 17:35 stderr.txt
[2025-11-24 17:35:47] HITS file was successfully produced:
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas 920625233 Nov 24 17:34 shared/HITS.pool.root.1
[2025-11-24 17:35:47]  *** Contents of shared directory: ***
[2025-11-24 17:35:47] total 1324116
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas 412035855 Nov 23 00:04 ATLAS.root_0
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-24 17:35:47] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:04 input.tar.gz
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas 920625233 Nov 24 17:34 HITS.pool.root.1
[2025-11-24 17:35:47] -rw-------. 1 boincer umatlas  22609920 Nov 24 17:35 result.tar.gz
17:35:49 (1208814): run_atlas exited; CPU time 250796.016310
17:35:49 (1208814): called boinc_finish(0)

</stderr_txt>
]]>

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