Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:15 (764909): wrapper (7.7.26015): starting
00:12:15 (764909): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:12:15] Arguments: --nthreads 8
[2025-11-23 00:12:15] Threads: 8
[2025-11-23 00:12:15] Checking for CVMFS
[2025-11-23 00:12:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:12:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:12:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:12:18] 2.13.3.0 15733 23855 353732 153197 3 466 31999407 32935936 31581 16776704 0 128724156 99.726 87182039 25814 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:12:18] CVMFS is ok
[2025-11-23 00:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:12:18] Further information can be found at the LHC@home message board.
[2025-11-23 00:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:12:18] Checking for apptainer binary...
[2025-11-23 00:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:12:18] Running /usr/bin/apptainer --version
[2025-11-23 00:12:18] apptainer version 1.4.4-1.el9
[2025-11-23 00:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:12:19] c-8-39.aglt2.org
[2025-11-23 00:12:19] apptainer works
[2025-11-23 00:12:19] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:12:19] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:12:19] Starting ATLAS job with PandaID=6895337139
[2025-11-23 00:12:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:20:10]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:20:10] 2025-11-24 15:19:26,756 | INFO     | .. there are 44 such processes running
[2025-11-24 10:20:10] 2025-11-24 15:19:27,520 | INFO     | monitor loop #6006: job 0:6895337139 is in state 'finished'
[2025-11-24 10:20:10] 2025-11-24 15:19:27,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:20:10] 2025-11-24 15:19:27,757 | INFO     | time since job start (122726s) is within the limit (172800.0s)
[2025-11-24 10:20:10] 2025-11-24 15:19:29,770 | INFO     | time since job start (122728s) is within the limit (172800.0s)
[2025-11-24 10:20:10] 2025-11-24 15:19:30,031 | INFO     | monitor loop #6007: job 0:6895337139 is in state 'finished'
[2025-11-24 10:20:10] 2025-11-24 15:19:30,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:20:10] 2025-11-24 15:19:30,348 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 10:20:10] 2025-11-24 15:19:30,366 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2731.0331874999997
[2025-11-24 10:20:10] 2025-11-24 15:19:30,375 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895337139/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:20:10] 2025-11-24 15:19:30,376 | INFO     | extracted standard info from prmon json
[2025-11-24 10:20:10] 2025-11-24 15:19:30,376 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:20:10] 2025-11-24 15:19:30,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:20:10] 2025-11-24 15:19:30,413 | INFO     | fitting pss+swap vs Time
[2025-11-24 10:20:10] 2025-11-24 15:19:30,416 | INFO     | sum of square deviations: 2510322697576.428
[2025-11-24 10:20:10] 2025-11-24 15:19:30,637 | INFO     | sum of deviations: 11709079137634.94
[2025-11-24 10:20:10] 2025-11-24 15:19:30,639 | INFO     | mean x: 1763936297.8650398
[2025-11-24 10:20:10] 2025-11-24 15:19:30,639 | INFO     | mean y: 2893719.815239044
[2025-11-24 10:20:10] 2025-11-24 15:19:30,639 | INFO     | intersect: -8224761523.62771
[2025-11-24 10:20:10] 2025-11-24 15:19:30,642 | INFO     | chi2: 16.47966508098405
[2025-11-24 10:20:10] 2025-11-24 15:19:30,649 | INFO     | sum of square deviations: 2491617282064.661
[2025-11-24 10:20:10] 2025-11-24 15:19:30,830 | INFO     | sum of deviations: 12391397336072.018
[2025-11-24 10:20:10] 2025-11-24 15:19:30,905 | INFO     | mean x: 1763936145.3734398
[2025-11-24 10:20:10] 2025-11-24 15:19:30,906 | INFO     | mean y: 2899282.7753369943
[2025-11-24 10:20:10] 2025-11-24 15:19:30,906 | INFO     | intersect: -8769569029.320093
[2025-11-24 10:20:10] 2025-11-24 15:19:30,908 | INFO     | chi2: 13.301343050327329
[2025-11-24 10:20:10] 2025-11-24 15:19:30,909 | INFO     | current chi2=13.301343050327329 (change=19.28632660334947 %)
[2025-11-24 10:20:10] 2025-11-24 15:19:30,909 | INFO     | right removable region: 2002
[2025-11-24 10:20:10] 2025-11-24 15:19:30,911 | INFO     | sum of square deviations: 2491613160294.6587
[2025-11-24 10:20:10] 2025-11-24 15:19:31,021 | INFO     | sum of deviations: 10892735485217.443
[2025-11-24 10:20:10] 2025-11-24 15:19:31,023 | INFO     | mean x: 1763936450.3734398
[2025-11-24 10:20:10] 2025-11-24 15:19:31,023 | INFO     | mean y: 2900373.5007488765
[2025-11-24 10:20:10] 2025-11-24 15:19:31,023 | INFO     | intersect: -7708606963.52865
[2025-11-24 10:20:10] 2025-11-24 15:19:31,026 | INFO     | chi2: 12.22160639147132
[2025-11-24 10:20:10] 2025-11-24 15:19:31,026 | INFO     | current chi2=12.22160639147132 (change=25.83825987110696 %)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,028 | INFO     | sum of square deviations: 2472997031925.6465
[2025-11-24 10:20:10] 2025-11-24 15:19:31,223 | INFO     | sum of deviations: 10191056726789.5
[2025-11-24 10:20:10] 2025-11-24 15:19:31,224 | INFO     | mean x: 1763936602.8808808
[2025-11-24 10:20:10] 2025-11-24 15:19:31,224 | INFO     | mean y: 2906122.065065065
[2025-11-24 10:20:10] 2025-11-24 15:19:31,224 | INFO     | intersect: -7266159610.869426
[2025-11-24 10:20:10] 2025-11-24 15:19:31,226 | INFO     | chi2: 9.214337449958572
[2025-11-24 10:20:10] 2025-11-24 15:19:31,227 | INFO     | current chi2=9.214337449958572 (change=24.606167513391117 %)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,227 | INFO     | left removable region: 20
[2025-11-24 10:20:10] 2025-11-24 15:19:31,229 | INFO     | sum of square deviations: 2414053306317.732
[2025-11-24 10:20:10] 2025-11-24 15:19:31,378 | INFO     | sum of deviations: 9983791257625.613
[2025-11-24 10:20:10] 2025-11-24 15:19:31,379 | INFO     | mean x: 1763936724.9066598
[2025-11-24 10:20:10] 2025-11-24 15:19:31,379 | INFO     | mean y: 2921204.878910192
[2025-11-24 10:20:10] 2025-11-24 15:19:31,379 | INFO     | intersect: -7292185331.103265
[2025-11-24 10:20:10] 2025-11-24 15:19:31,386 | INFO     | chi2: 2.5347340626067307
[2025-11-24 10:20:10] 2025-11-24 15:19:31,386 | INFO     | current memory leak: 4.14 B/s (using 1982 data points, chi2=2.53)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,387 | INFO     | could have reported an average CPU frequency of 2747 MHz (70 samples)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | ..............................
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . Timing measurements:
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . get job = 0 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . initial setup = 11 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . payload setup = 83 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . stage-in = 0 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,388 | INFO     | . payload execution = 122513 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,389 | INFO     | . stage-out = 6 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,389 | INFO     | . log creation = 1 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,389 | INFO     | ..............................
[2025-11-24 10:20:10] 2025-11-24 15:19:31,777 | INFO     | time since job start (122730s) is within the limit (172800.0s)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | 
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | job summary report
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | --------------------------------------------------
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | PanDA job id: 6895337139
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | task id: 47556149
[2025-11-24 10:20:10] 2025-11-24 15:19:31,990 | INFO     | errors: (none)
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | pilot state: finished 
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | transexitcode: 0
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | exeerrorcode: 0
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | exeerrordiag: 
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | exitcode: 0
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | exitmsg: OK
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | cpuconsumptiontime: 331528 s
[2025-11-24 10:20:10] 2025-11-24 15:19:31,991 | INFO     | nevents: 1000
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | neventsw: 0
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | pid: 781761
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | pgrp: 781761
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | corecount: 8
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | event service: False
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | sizes: {0: 2298527, 1: 2298583, 2: 2298611, 3: 2298838, 15: 2298838, 26: 2298866, 37: 2299022, 48: 2299050, 52: 2299340, 59: 2299368, 122601: 2377426, 122608: 2387
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | --------------------------------------------------
[2025-11-24 10:20:10] 2025-11-24 15:19:31,992 | INFO     | 
[2025-11-24 10:20:10] 2025-11-24 15:19:31,993 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-24 10:20:10] 2025-11-24 15:19:32,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,011 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,011 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,011 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,011 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:20:10] 2025-11-24 15:19:32,014 | INFO     | job 6895337139 has completed (purged errors)
[2025-11-24 10:20:10] 2025-11-24 15:19:32,014 | INFO     | overall cleanup function is called
[2025-11-24 10:20:10] 2025-11-24 15:19:33,032 | INFO     | --- collectZombieJob: --- 10, [781761]
[2025-11-24 10:20:10] 2025-11-24 15:19:33,033 | INFO     | zombie collector waiting for pid 781761
[2025-11-24 10:20:10] 2025-11-24 15:19:33,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:20:10] 2025-11-24 15:19:33,033 | INFO     | collected zombie processes
[2025-11-24 10:20:10] 2025-11-24 15:19:33,033 | INFO     | will attempt to kill all subprocesses of pid=781761
[2025-11-24 10:20:10] 2025-11-24 15:19:33,688 | INFO     | process IDs to be killed: [781761] (in reverse order)
[2025-11-24 10:20:10] 2025-11-24 15:19:33,863 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:20:10] 2025-11-24 15:19:33,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:20:10] 2025-11-24 15:19:33,896 | INFO     | did not find any defunct processes belonging to 781761
[2025-11-24 10:20:10] 2025-11-24 15:19:33,952 | INFO     | did not find any defunct processes belonging to 781761
[2025-11-24 10:20:10] 2025-11-24 15:19:33,970 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:20:10] 2025-11-24 15:19:33,971 | INFO     | ready for new job
[2025-11-24 10:20:10] 2025-11-24 15:19:33,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:20:10] 2025-11-24 15:19:33,988 | INFO     | ***************************************
[2025-11-24 10:20:10] 2025-11-24 15:19:33,988 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:20:10] 2025-11-24 15:19:33,988 | INFO     | ***************************************
[2025-11-24 10:20:10] 2025-11-24 15:19:33,988 | INFO     | 
[2025-11-24 10:20:10] 2025-11-24 15:19:33,994 | INFO     | architecture information:
[2025-11-24 10:20:10] 2025-11-24 15:19:33,999 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:20:10] 2025-11-24 15:19:34,042 | INFO     | cat /etc/os-release:
[2025-11-24 10:20:10] NAME="CentOS Linux"
[2025-11-24 10:20:10] VERSION="7 (Core)"
[2025-11-24 10:20:10] ID="centos"
[2025-11-24 10:20:10] ID_LIKE="rhel fedora"
[2025-11-24 10:20:10] VERSION_ID="7"
[2025-11-24 10:20:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:20:10] ANSI_COLOR="0;31"
[2025-11-24 10:20:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:20:10] HOME_URL="https://www.centos.org/"
[2025-11-24 10:20:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:20:10] 
[2025-11-24 10:20:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:20:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:20:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:20:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:20:10] 
[2025-11-24 10:20:10] 2025-11-24 15:19:34,042 | INFO     | ***************************************
[2025-11-24 10:20:10] 2025-11-24 15:19:34,556 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-24 10:20:10] 2025-11-24 15:19:34,619 | INFO     | sufficient remaining disk space (72737619968 B)
[2025-11-24 10:20:10] 2025-11-24 15:19:34,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:20:10] 2025-11-24 15:19:34,619 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:20:10] 2025-11-24 15:19:34,619 | INFO     | update_server=False
[2025-11-24 10:20:10] 2025-11-24 15:19:34,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:20:10] 2025-11-24 15:19:34,812 | INFO     | all payload control threads have been joined
[2025-11-24 10:20:10] 2025-11-24 15:19:35,097 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 10:20:10] 2025-11-24 15:19:35,098 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 10:20:10] 2025-11-24 15:19:35,098 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:20:10] 2025-11-24 15:19:35,098 | INFO     | will abort loop
[2025-11-24 10:20:10] 2025-11-24 15:19:35,410 | INFO     | all data control threads have been joined
[2025-11-24 10:20:10] 2025-11-24 15:19:35,626 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:35,695 | INFO     | all job control threads have been joined
[2025-11-24 10:20:10] 2025-11-24 15:19:35,747 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:35,748 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:35,818 | INFO     | [payload] control thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:35,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:20:10] 2025-11-24 15:19:35,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:20:10] 2025-11-24 15:19:36,104 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,416 | INFO     | [data] control thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,479 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:20:10] 2025-11-24 15:19:36,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,701 | INFO     | [job] control thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,733 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,740 | INFO     | [job] validate thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,926 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:36,979 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:37,643 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:38,023 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:19:40,031 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:20:10] 2025-11-24 15:20:03,367 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:20:10] 2025-11-24 15:20:04,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286209759040)>', '<ExcThread(monitor, started 140285568870144)>']
[2025-11-24 10:20:10] 2025-11-24 15:20:05,937 | INFO     | PID=772536 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 10:20:10] 2025-11-24 15:20:05,937 | INFO     | .. there are 44 such processes running
[2025-11-24 10:20:10] 2025-11-24 15:20:05,937 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:20:10] 2025-11-24 15:20:05,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:20:10] 2025-11-24 15:20:05,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:20:10] 2025-11-24 15:20:05,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:20:10] 2025-11-24 15:20:05,938 | INFO     | [monitor] control thread has ended
[2025-11-24 10:20:10] 2025-11-24 15:20:09,469 | INFO     | all workflow threads have been joined
[2025-11-24 10:20:10] 2025-11-24 15:20:09,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:20:10] 2025-11-24 15:20:09,470 | INFO     | traces error code: 0
[2025-11-24 10:20:10] 2025-11-24 15:20:09,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:20:10] 2025-11-24 15:20:09,722 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:20:10] 2025-11-24 15:20:09,754 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:20:10] 2025-11-24 15:20:09,758 [wrapper] pilotpid: 772536
[2025-11-24 10:20:10] 2025-11-24 15:20:09,762 [wrapper] Pilot exit status: 0
[2025-11-24 10:20:10] 2025-11-24 15:20:09,852 [wrapper] pandaids: 6895337139
[2025-11-24 10:20:10] 2025-11-24 15:20:09,970 [wrapper] cleanup supervisor_pilot 4169828 772537
[2025-11-24 10:20:10] 2025-11-24 15:20:09,998 [wrapper] Test setup, not cleaning
[2025-11-24 10:20:10] 2025-11-24 15:20:10,036 [wrapper] apfmon messages muted
[2025-11-24 10:20:10] 2025-11-24 15:20:10,104 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:20:10] 2025-11-24 15:20:10,122 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:20:10]  *** Error codes and diagnostics ***
[2025-11-24 10:20:10]     "exeErrorCode": 0,
[2025-11-24 10:20:10]     "exeErrorDiag": "",
[2025-11-24 10:20:10]     "pilotErrorCode": 0,
[2025-11-24 10:20:10]     "pilotErrorDiag": "",
[2025-11-24 10:20:10]  *** Listing of results directory ***
[2025-11-24 10:20:10] total 1330676
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:46 pilot3.tar.gz
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:51 queuedata.json
[2025-11-24 10:20:10] -rwx------. 1 boincer umatlas     36292 Nov 22 00:54 runpilot2-wrapper.sh
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:20:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:12 run_atlas
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:12 job.xml
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas 410895018 Nov 23 00:12 EVNT.47483658._001071.pool.root.1
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:12 start_atlas.sh
[2025-11-24 10:20:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:12 shared
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 00:12 input.tar.gz
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:12 boinc_lockfile
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 00:12 pandaJob.out
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas        57 Nov 23 00:12 setup.sh.local
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas    989784 Nov 23 00:13 agis_schedconf.cvmfs.json
[2025-11-24 10:20:10] drwx------. 5 boincer umatlas      4096 Nov 23 00:14 pilot3
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas       533 Nov 24 10:04 boinc_task_state.xml
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas 914918780 Nov 24 10:18 HITS.47556149._000578.pool.root.1
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas      6613 Nov 24 10:18 init_data.xml
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas      1072 Nov 24 10:19 memory_monitor_summary.json
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas        95 Nov 24 10:19 pilot_heartbeat.json
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas   1516227 Nov 24 10:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas   2770864 Nov 24 10:19 log.47556149._000578.job.log.tgz.1
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas      7947 Nov 24 10:19 heartbeat.json
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 10:20 boinc_mmap_file
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas        29 Nov 24 10:20 wrapper_checkpoint.txt
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas      5009 Nov 24 10:20 pilotlog.txt
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas  13672272 Nov 24 10:20 log.47556149._000578.job.log.1
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas       353 Nov 24 10:20 output.list
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas       620 Nov 24 10:20 runtime_log
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas  16465920 Nov 24 10:20 result.tar.gz
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas      9334 Nov 24 10:20 runtime_log.err
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas       661 Nov 24 10:20 DwrKDmWkvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY0JKDmWxTkYm.diag
[2025-11-24 10:20:10] -rw-r--r--. 1 boincer umatlas     21537 Nov 24 10:20 stderr.txt
[2025-11-24 10:20:10] HITS file was successfully produced:
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas 914918780 Nov 24 10:18 shared/HITS.pool.root.1
[2025-11-24 10:20:10]  *** Contents of shared directory: ***
[2025-11-24 10:20:10] total 1311424
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas 410895018 Nov 23 00:12 ATLAS.root_0
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:12 start_atlas.sh
[2025-11-24 10:20:10] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 00:12 input.tar.gz
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas 914918780 Nov 24 10:18 HITS.pool.root.1
[2025-11-24 10:20:10] -rw-------. 1 boincer umatlas  16465920 Nov 24 10:20 result.tar.gz
10:20:12 (764909): run_atlas exited; CPU time 336387.259653
10:20:12 (764909): called boinc_finish(0)

</stderr_txt>
]]>

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