Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:58 (509209): wrapper (7.7.26015): starting
00:01:58 (509209): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:59] Arguments: --nthreads 9
[2025-11-23 00:01:59] Threads: 9
[2025-11-23 00:01:59] Checking for CVMFS
[2025-11-23 00:01:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:01] 2.13.3.0 9890 25149 336920 153197 0 329 32374615 32935937 20638 16776704 0 156288821 99.801 80254185 35014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:02:01] CVMFS is ok
[2025-11-23 00:02:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:01] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:01] Checking for apptainer binary...
[2025-11-23 00:02:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:01] Running /usr/bin/apptainer --version
[2025-11-23 00:02:01] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:02] c-8-36.aglt2.org
[2025-11-23 00:02:02] apptainer works
[2025-11-23 00:02:02] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:02:02] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:02:02] Starting ATLAS job with PandaID=6895337269
[2025-11-23 00:02:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:46:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:46:58] 2025-11-24 18:45:43,852 | INFO     | executing command: lscpu
[2025-11-24 13:46:58] 2025-11-24 18:45:43,937 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 13:46:58] 2025-11-24 18:45:44,447 | INFO     | time since job start (135720s) is within the limit (172800.0s)
[2025-11-24 13:46:58] 2025-11-24 18:45:46,069 | INFO     | monitor loop #8240: job 0:6895337269 is in state 'finished'
[2025-11-24 13:46:58] 2025-11-24 18:45:46,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:46:58] 2025-11-24 18:45:46,457 | INFO     | time since job start (135722s) is within the limit (172800.0s)
[2025-11-24 13:46:58] 2025-11-24 18:45:48,474 | INFO     | time since job start (135724s) is within the limit (172800.0s)
[2025-11-24 13:46:58] 2025-11-24 18:45:48,574 | INFO     | monitor loop #8241: job 0:6895337269 is in state 'finished'
[2025-11-24 13:46:58] 2025-11-24 18:45:48,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:46:58] 2025-11-24 18:45:50,481 | INFO     | time since job start (135726s) is within the limit (172800.0s)
[2025-11-24 13:46:58] 2025-11-24 18:45:51,090 | INFO     | monitor loop #8242: job 0:6895337269 is in state 'finished'
[2025-11-24 13:46:58] 2025-11-24 18:45:51,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:46:58] 2025-11-24 18:45:52,493 | INFO     | time since job start (135728s) is within the limit (172800.0s)
[2025-11-24 13:46:58] 2025-11-24 18:45:53,602 | INFO     | monitor loop #8243: job 0:6895337269 is in state 'finished'
[2025-11-24 13:46:58] 2025-11-24 18:45:53,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,238 | INFO     | PID=516325 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:46:58] 2025-11-24 18:45:54,239 | INFO     | .. there are 40 such processes running
[2025-11-24 13:46:58] 2025-11-24 18:45:54,445 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:46:58] 2025-11-24 18:45:54,452 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1867749999997
[2025-11-24 13:46:58] 2025-11-24 18:45:54,458 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895337269/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,459 | INFO     | extracted standard info from prmon json
[2025-11-24 13:46:58] 2025-11-24 18:45:54,459 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:46:58] 2025-11-24 18:45:54,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:46:58] 2025-11-24 18:45:54,499 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:46:58] 2025-11-24 18:45:54,502 | INFO     | sum of square deviations: 3397130385112.5317
[2025-11-24 13:46:58] 2025-11-24 18:45:54,615 | INFO     | sum of deviations: 14157475775134.285
[2025-11-24 13:46:58] 2025-11-24 18:45:54,616 | INFO     | mean x: 1763942166.4034219
[2025-11-24 13:46:58] 2025-11-24 18:45:54,616 | INFO     | mean y: 3089498.749662314
[2025-11-24 13:46:58] 2025-11-24 18:45:54,616 | INFO     | intersect: -7348105674.39854
[2025-11-24 13:46:58] 2025-11-24 18:45:54,619 | INFO     | chi2: 20.161387928038735
[2025-11-24 13:46:58] 2025-11-24 18:45:54,621 | INFO     | sum of square deviations: 3374239074007.6562
[2025-11-24 13:46:58] 2025-11-24 18:45:54,734 | INFO     | sum of deviations: 14943540712603.027
[2025-11-24 13:46:58] 2025-11-24 18:45:54,735 | INFO     | mean x: 1763942013.9065886
[2025-11-24 13:46:58] 2025-11-24 18:45:54,735 | INFO     | mean y: 3094734.7824909748
[2025-11-24 13:46:58] 2025-11-24 18:45:54,735 | INFO     | intersect: -7808900420.66934
[2025-11-24 13:46:58] 2025-11-24 18:45:54,738 | INFO     | chi2: 17.090995329854834
[2025-11-24 13:46:58] 2025-11-24 18:45:54,738 | INFO     | current chi2=17.090995329854834 (change=15.229073559533374 %)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,738 | INFO     | right removable region: 2215
[2025-11-24 13:46:58] 2025-11-24 18:45:54,741 | INFO     | sum of square deviations: 3374237172637.6587
[2025-11-24 13:46:58] 2025-11-24 18:45:54,857 | INFO     | sum of deviations: 13162893565249.994
[2025-11-24 13:46:58] 2025-11-24 18:45:54,857 | INFO     | mean x: 1763942318.9065886
[2025-11-24 13:46:58] 2025-11-24 18:45:54,857 | INFO     | mean y: 3096123.81633574
[2025-11-24 13:46:58] 2025-11-24 18:45:54,857 | INFO     | intersect: -6878039911.104884
[2025-11-24 13:46:58] 2025-11-24 18:45:54,860 | INFO     | chi2: 15.63098198703863
[2025-11-24 13:46:58] 2025-11-24 18:45:54,861 | INFO     | current chi2=15.63098198703863 (change=22.470704681494684 %)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,861 | INFO     | left removable region: 10
[2025-11-24 13:46:58] 2025-11-24 18:45:54,864 | INFO     | sum of square deviations: 3324236871772.794
[2025-11-24 13:46:58] 2025-11-24 18:45:54,985 | INFO     | sum of deviations: 13211689394865.2
[2025-11-24 13:46:58] 2025-11-24 18:45:54,985 | INFO     | mean x: 1763942288.4136055
[2025-11-24 13:46:58] 2025-11-24 18:45:54,985 | INFO     | mean y: 3108349.8145124717
[2025-11-24 13:46:58] 2025-11-24 18:45:54,985 | INFO     | intersect: -7007420238.829671
[2025-11-24 13:46:58] 2025-11-24 18:45:54,988 | INFO     | chi2: 8.485672583296722
[2025-11-24 13:46:58] 2025-11-24 18:45:54,988 | INFO     | current memory leak: 3.97 B/s (using 2205 data points, chi2=8.49)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,990 | INFO     | could have reported an average CPU frequency of 2600 MHz (78 samples)
[2025-11-24 13:46:58] 2025-11-24 18:45:54,990 | INFO     | ..............................
[2025-11-24 13:46:58] 2025-11-24 18:45:54,990 | INFO     | . Timing measurements:
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . get job = 0 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . initial setup = 6 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . payload setup = 67 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . stage-in = 1 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . payload execution = 135527 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . stage-out = 4 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | . log creation = 1 s
[2025-11-24 13:46:58] 2025-11-24 18:45:54,991 | INFO     | ..............................
[2025-11-24 13:46:58] 2025-11-24 18:45:55,101 | INFO     | 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,101 | INFO     | job summary report
[2025-11-24 13:46:58] 2025-11-24 18:45:55,101 | INFO     | --------------------------------------------------
[2025-11-24 13:46:58] 2025-11-24 18:45:55,101 | INFO     | PanDA job id: 6895337269
[2025-11-24 13:46:58] 2025-11-24 18:45:55,101 | INFO     | task id: 47556137
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | errors: (none)
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | pilot state: finished 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | transexitcode: 0
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | exeerrorcode: 0
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | exeerrordiag: 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | exitcode: 0
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | exitmsg: OK
[2025-11-24 13:46:58] 2025-11-24 18:45:55,102 | INFO     | cpuconsumptiontime: 304030 s
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | nevents: 1000
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | neventsw: 0
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | pid: 538828
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | pgrp: 538828
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | corecount: 9
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | event service: False
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | sizes: {0: 2297871, 1: 2298556, 2: 2298755, 3: 2298755, 15: 2298783, 27: 2298811, 38: 2298967, 50: 2299285, 61: 2299285, 135599: 2387413, 135604: 2397198, 135605: 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,103 | INFO     | --------------------------------------------------
[2025-11-24 13:46:58] 2025-11-24 18:45:55,104 | INFO     | 
[2025-11-24 13:46:58] 2025-11-24 18:45:55,104 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 13:46:58] 2025-11-24 18:45:55,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:46:58] 2025-11-24 18:45:55,129 | INFO     | job 6895337269 has completed (purged errors)
[2025-11-24 13:46:58] 2025-11-24 18:45:55,129 | INFO     | overall cleanup function is called
[2025-11-24 13:46:58] 2025-11-24 18:45:56,154 | INFO     | --- collectZombieJob: --- 10, [538828]
[2025-11-24 13:46:58] 2025-11-24 18:45:56,154 | INFO     | zombie collector waiting for pid 538828
[2025-11-24 13:46:58] 2025-11-24 18:45:56,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:46:58] 2025-11-24 18:45:56,154 | INFO     | collected zombie processes
[2025-11-24 13:46:58] 2025-11-24 18:45:56,154 | INFO     | will attempt to kill all subprocesses of pid=538828
[2025-11-24 13:46:58] 2025-11-24 18:45:56,908 | INFO     | process IDs to be killed: [538828] (in reverse order)
[2025-11-24 13:46:58] 2025-11-24 18:45:57,053 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:46:58] 2025-11-24 18:45:57,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:46:58] 2025-11-24 18:45:57,069 | INFO     | did not find any defunct processes belonging to 538828
[2025-11-24 13:46:58] 2025-11-24 18:45:57,085 | INFO     | did not find any defunct processes belonging to 538828
[2025-11-24 13:46:58] 2025-11-24 18:45:57,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:46:58] 2025-11-24 18:45:57,087 | INFO     | ready for new job
[2025-11-24 13:46:58] 2025-11-24 18:45:57,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:46:58] 2025-11-24 18:45:57,097 | INFO     | ***************************************
[2025-11-24 13:46:58] 2025-11-24 18:45:57,097 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:46:58] 2025-11-24 18:45:57,097 | INFO     | ***************************************
[2025-11-24 13:46:58] 2025-11-24 18:45:57,097 | INFO     | 
[2025-11-24 13:46:58] 2025-11-24 18:45:57,099 | INFO     | architecture information:
[2025-11-24 13:46:58] 2025-11-24 18:45:57,100 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:46:58] 2025-11-24 18:45:57,198 | INFO     | cat /etc/os-release:
[2025-11-24 13:46:58] NAME="CentOS Linux"
[2025-11-24 13:46:58] VERSION="7 (Core)"
[2025-11-24 13:46:58] ID="centos"
[2025-11-24 13:46:58] ID_LIKE="rhel fedora"
[2025-11-24 13:46:58] VERSION_ID="7"
[2025-11-24 13:46:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:46:58] ANSI_COLOR="0;31"
[2025-11-24 13:46:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:46:58] HOME_URL="https://www.centos.org/"
[2025-11-24 13:46:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:46:58] 
[2025-11-24 13:46:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:46:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:46:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:46:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:46:58] 
[2025-11-24 13:46:58] 2025-11-24 18:45:57,198 | INFO     | ***************************************
[2025-11-24 13:46:58] 2025-11-24 18:45:57,705 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 13:46:58] 2025-11-24 18:45:57,723 | INFO     | sufficient remaining disk space (72552022016 B)
[2025-11-24 13:46:58] 2025-11-24 18:45:57,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:46:58] 2025-11-24 18:45:57,724 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:46:58] 2025-11-24 18:45:57,724 | INFO     | update_server=False
[2025-11-24 13:46:58] 2025-11-24 18:45:57,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:46:58] 2025-11-24 18:45:57,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:46:58] 2025-11-24 18:45:57,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:46:58] 2025-11-24 18:45:57,725 | INFO     | aborting loop
[2025-11-24 13:46:58] 2025-11-24 18:45:58,005 | INFO     | all data control threads have been joined
[2025-11-24 13:46:58] 2025-11-24 18:45:58,729 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:58,733 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:58,783 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:58,828 | INFO     | all payload control threads have been joined
[2025-11-24 13:46:58] 2025-11-24 18:45:58,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:46:58] 2025-11-24 18:45:59,011 | INFO     | [data] control thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,131 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,246 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,395 | INFO     | all job control threads have been joined
[2025-11-24 13:46:58] 2025-11-24 18:45:59,567 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,732 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,811 | INFO     | [job] validate thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,834 | INFO     | [payload] control thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,907 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,911 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:45:59,963 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:46:00,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:46:58] 2025-11-24 18:46:00,400 | INFO     | [job] control thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:46:01,133 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:46:02,896 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:46:58] 2025-11-24 18:46:26,942 | INFO     | PID=516325 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 13:46:58] 2025-11-24 18:46:26,943 | INFO     | .. there are 40 such processes running
[2025-11-24 13:46:58] 2025-11-24 18:46:26,943 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:46:58] 2025-11-24 18:46:26,944 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:46:58] 2025-11-24 18:46:26,944 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:46:58] 2025-11-24 18:46:52,743 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:46:58] 2025-11-24 18:46:53,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093593802560)>', '<ExcThread(monitor, started 140092949645056)>']
[2025-11-24 13:46:58] 2025-11-24 18:46:54,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:46:58] 2025-11-24 18:46:54,124 | INFO     | [monitor] control thread has ended
[2025-11-24 13:46:58] 2025-11-24 18:46:58,530 | INFO     | all workflow threads have been joined
[2025-11-24 13:46:58] 2025-11-24 18:46:58,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:46:58] 2025-11-24 18:46:58,533 | INFO     | traces error code: 0
[2025-11-24 13:46:58] 2025-11-24 18:46:58,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:46:58] 2025-11-24 18:46:58,688 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:46:58] 2025-11-24 18:46:58,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:46:58] 2025-11-24 18:46:58,694 [wrapper] pilotpid: 516325
[2025-11-24 13:46:58] 2025-11-24 18:46:58,700 [wrapper] Pilot exit status: 0
[2025-11-24 13:46:58] 2025-11-24 18:46:58,716 [wrapper] pandaids: 6895337269
[2025-11-24 13:46:58] 2025-11-24 18:46:58,799 [wrapper] cleanup supervisor_pilot 3524721 516326
[2025-11-24 13:46:58] 2025-11-24 18:46:58,802 [wrapper] Test setup, not cleaning
[2025-11-24 13:46:58] 2025-11-24 18:46:58,806 [wrapper] apfmon messages muted
[2025-11-24 13:46:58] 2025-11-24 18:46:58,809 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:46:58] 2025-11-24 18:46:58,812 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:46:58]  *** Error codes and diagnostics ***
[2025-11-24 13:46:58]     "exeErrorCode": 0,
[2025-11-24 13:46:58]     "exeErrorDiag": "",
[2025-11-24 13:46:58]     "pilotErrorCode": 0,
[2025-11-24 13:46:58]     "pilotErrorDiag": "",
[2025-11-24 13:46:58]  *** Listing of results directory ***
[2025-11-24 13:46:58] total 1344672
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:57 pilot3.tar.gz
[2025-11-24 13:46:58] -rwx------. 1 boincer umatlas     36292 Nov 22 01:14 runpilot2-wrapper.sh
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 01:14 queuedata.json
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:46:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas 411279295 Nov 23 00:01 EVNT.47483658._000295.pool.root.1
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 13:46:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:01 input.tar.gz
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas      2781 Nov 23 00:02 pandaJob.out
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas        57 Nov 23 00:02 setup.sh.local
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 13:46:58] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas       533 Nov 24 13:25 boinc_task_state.xml
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas 921050557 Nov 24 13:44 HITS.47556137._002911.pool.root.1
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas      6661 Nov 24 13:45 init_data.xml
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas      1067 Nov 24 13:45 memory_monitor_summary.json
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:45 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas   3170146 Nov 24 13:45 log.47556137._002911.job.log.tgz.1
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas      8627 Nov 24 13:45 heartbeat.json
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas        95 Nov 24 13:46 pilot_heartbeat.json
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas        29 Nov 24 13:46 wrapper_checkpoint.txt
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:46 boinc_mmap_file
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas      4823 Nov 24 13:46 pilotlog.txt
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas  17182146 Nov 24 13:46 log.47556137._002911.job.log.1
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas       353 Nov 24 13:46 output.list
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:46 runtime_log
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas  20367360 Nov 24 13:46 result.tar.gz
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas      9334 Nov 24 13:46 runtime_log.err
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas       664 Nov 24 13:46 06EMDmP4vg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd1JKDmQrsTin.diag
[2025-11-24 13:46:58] -rw-r--r--. 1 boincer umatlas     21936 Nov 24 13:46 stderr.txt
[2025-11-24 13:46:58] HITS file was successfully produced:
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas 921050557 Nov 24 13:44 shared/HITS.pool.root.1
[2025-11-24 13:46:58]  *** Contents of shared directory: ***
[2025-11-24 13:46:58] total 1321600
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas 411279295 Nov 23 00:01 ATLAS.root_0
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 13:46:58] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:01 input.tar.gz
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas 921050557 Nov 24 13:44 HITS.pool.root.1
[2025-11-24 13:46:58] -rw-------. 1 boincer umatlas  20367360 Nov 24 13:46 result.tar.gz
13:47:00 (509209): run_atlas exited; CPU time 307678.926796
13:47:00 (509209): called boinc_finish(0)

</stderr_txt>
]]>

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