Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:15 (3955340): wrapper (7.7.26015): starting
00:01:15 (3955340): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:15] Arguments: --nthreads 9
[2025-11-23 00:01:15] Threads: 9
[2025-11-23 00:01:15] Checking for CVMFS
[2025-11-23 00:01:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:01:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:01:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:01:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:01:17] 2.13.3.0 11066 25284 336404 153197 3 363 30709865 32935936 17167 16776704 0 70630472 99.439 97198728 38203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:01:17] CVMFS is ok
[2025-11-23 00:01:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:01:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:01:17] Further information can be found at the LHC@home message board.
[2025-11-23 00:01:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:01:17] Checking for apptainer binary...
[2025-11-23 00:01:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:01:17] Running /usr/bin/apptainer --version
[2025-11-23 00:01:17] apptainer version 1.4.4-1.el9
[2025-11-23 00:01:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:01:18] c6-1-24-4.aglt2.org
[2025-11-23 00:01:18] apptainer works
[2025-11-23 00:01:18] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:01:18] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:01:18] Starting ATLAS job with PandaID=6895346109
[2025-11-23 00:01:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 17:19:40]  *** The last 200 lines of the pilot log: ***
[2025-11-24 17:19:40] 2025-11-24 22:18:54,114 | INFO     | monitor loop #8122: job 0:6895346109 is in state 'finished'
[2025-11-24 17:19:40] 2025-11-24 22:18:54,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:19:40] 2025-11-24 22:18:55,320 | INFO     | time since job start (148573s) is within the limit (172800.0s)
[2025-11-24 17:19:40] 2025-11-24 22:18:56,622 | INFO     | monitor loop #8123: job 0:6895346109 is in state 'finished'
[2025-11-24 17:19:40] 2025-11-24 22:18:56,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:19:40] 2025-11-24 22:18:57,348 | INFO     | time since job start (148575s) is within the limit (172800.0s)
[2025-11-24 17:19:40] 2025-11-24 22:18:59,153 | INFO     | monitor loop #8124: job 0:6895346109 is in state 'finished'
[2025-11-24 17:19:40] 2025-11-24 22:18:59,153 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:19:40] 2025-11-24 22:19:00,282 | INFO     | PID=3968817 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:19:40] 2025-11-24 22:19:00,282 | INFO     | .. there are 26 such processes running
[2025-11-24 17:19:40] 2025-11-24 22:19:01,289 | INFO     | time since job start (148579s) is within the limit (172800.0s)
[2025-11-24 17:19:40] 2025-11-24 22:19:01,661 | INFO     | monitor loop #8125: job 0:6895346109 is in state 'finished'
[2025-11-24 17:19:40] 2025-11-24 22:19:01,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:19:40] 2025-11-24 22:19:03,312 | INFO     | time since job start (148581s) is within the limit (172800.0s)
[2025-11-24 17:19:40] 2025-11-24 22:19:04,195 | INFO     | monitor loop #8126: job 0:6895346109 is in state 'finished'
[2025-11-24 17:19:40] 2025-11-24 22:19:04,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:19:40] 2025-11-24 22:19:04,455 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 17:19:40] 2025-11-24 22:19:04,462 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2948.1090535714284
[2025-11-24 17:19:40] 2025-11-24 22:19:04,486 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895346109/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 17:19:40] 2025-11-24 22:19:04,487 | INFO     | extracted standard info from prmon json
[2025-11-24 17:19:40] 2025-11-24 22:19:04,487 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 17:19:40] 2025-11-24 22:19:04,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 17:19:40] 2025-11-24 22:19:04,594 | INFO     | fitting pss+swap vs Time
[2025-11-24 17:19:40] 2025-11-24 22:19:04,609 | INFO     | sum of square deviations: 4465625806732.936
[2025-11-24 17:19:40] 2025-11-24 22:19:05,068 | INFO     | sum of deviations: 16206445476264.951
[2025-11-24 17:19:40] 2025-11-24 22:19:05,068 | INFO     | mean x: 1763948532.9708178
[2025-11-24 17:19:40] 2025-11-24 22:19:05,069 | INFO     | mean y: 3073163.60460337
[2025-11-24 17:19:40] 2025-11-24 22:19:05,069 | INFO     | intersect: -6398568388.947173
[2025-11-24 17:19:40] 2025-11-24 22:19:05,071 | INFO     | chi2: 23.108148258377664
[2025-11-24 17:19:40] 2025-11-24 22:19:05,074 | INFO     | sum of square deviations: 4438153017314.126
[2025-11-24 17:19:40] 2025-11-24 22:19:05,220 | INFO     | sum of deviations: 17087460861955.756
[2025-11-24 17:19:40] 2025-11-24 22:19:05,221 | INFO     | mean x: 1763948380.4810543
[2025-11-24 17:19:40] 2025-11-24 22:19:05,221 | INFO     | mean y: 3078053.3101317957
[2025-11-24 17:19:40] 2025-11-24 22:19:05,221 | INFO     | intersect: -6788350452.285012
[2025-11-24 17:19:40] 2025-11-24 22:19:05,254 | INFO     | chi2: 19.84763605063472
[2025-11-24 17:19:40] 2025-11-24 22:19:05,255 | INFO     | current chi2=19.84763605063472 (change=14.109794394974395 %)
[2025-11-24 17:19:40] 2025-11-24 22:19:05,255 | INFO     | right removable region: 2427
[2025-11-24 17:19:40] 2025-11-24 22:19:05,270 | INFO     | sum of square deviations: 4438145639974.12
[2025-11-24 17:19:40] 2025-11-24 22:19:05,329 | INFO     | time since job start (148583s) is within the limit (172800.0s)
[2025-11-24 17:19:40] 2025-11-24 22:19:05,783 | INFO     | sum of deviations: 15139431706870.4
[2025-11-24 17:19:40] 2025-11-24 22:19:05,783 | INFO     | mean x: 1763948685.4810543
[2025-11-24 17:19:40] 2025-11-24 22:19:05,783 | INFO     | mean y: 3079084.9320428334
[2025-11-24 17:19:40] 2025-11-24 22:19:05,783 | INFO     | intersect: -6014114316.233576
[2025-11-24 17:19:40] 2025-11-24 22:19:05,790 | INFO     | chi2: 18.750685696445355
[2025-11-24 17:19:40] 2025-11-24 22:19:05,790 | INFO     | current chi2=18.750685696445355 (change=18.856822767495217 %)
[2025-11-24 17:19:40] 2025-11-24 22:19:05,790 | INFO     | left removable region: 10
[2025-11-24 17:19:40] 2025-11-24 22:19:05,793 | INFO     | sum of square deviations: 4378095615592.981
[2025-11-24 17:19:40] 2025-11-24 22:19:06,018 | INFO     | sum of deviations: 15260747328761.105
[2025-11-24 17:19:40] 2025-11-24 22:19:06,019 | INFO     | mean x: 1763948655.002896
[2025-11-24 17:19:40] 2025-11-24 22:19:06,019 | INFO     | mean y: 3090337.8361605294
[2025-11-24 17:19:40] 2025-11-24 22:19:06,019 | INFO     | intersect: -6145513321.945077
[2025-11-24 17:19:40] 2025-11-24 22:19:06,022 | INFO     | chi2: 11.428325792754856
[2025-11-24 17:19:40] 2025-11-24 22:19:06,022 | INFO     | current memory leak: 3.49 B/s (using 2417 data points, chi2=11.43)
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | could have reported an average CPU frequency of 2888 MHz (84 samples)
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | ..............................
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . Timing measurements:
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . get job = 0 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . initial setup = 7 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . payload setup = 59 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . stage-in = 0 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . payload execution = 148398 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . stage-out = 8 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,030 | INFO     | . log creation = 2 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,031 | INFO     | ..............................
[2025-11-24 17:19:40] 2025-11-24 22:19:06,492 | INFO     | 
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | job summary report
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | --------------------------------------------------
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | PanDA job id: 6895346109
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | task id: 47556137
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | errors: (none)
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | pilot state: finished 
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | transexitcode: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | exeerrorcode: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | exeerrordiag: 
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | exitcode: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | exitmsg: OK
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | cpuconsumptiontime: 236385 s
[2025-11-24 17:19:40] 2025-11-24 22:19:06,493 | INFO     | nevents: 1000
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | neventsw: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | pid: 4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | pgrp: 4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | corecount: 9
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | event service: False
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | sizes: {0: 2297927, 1: 2298528, 2: 2298640, 3: 2298839, 4: 2298839, 16: 2298867, 27: 2299023, 38: 2299051, 42: 2299341, 49: 2299397, 148459: 2390336, 148460: 23906
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | --------------------------------------------------
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | 
[2025-11-24 17:19:40] 2025-11-24 22:19:06,494 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 17:19:40] 2025-11-24 22:19:06,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,689 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | job 6895346109 has completed (purged errors)
[2025-11-24 17:19:40] 2025-11-24 22:19:06,691 | INFO     | overall cleanup function is called
[2025-11-24 17:19:40] 2025-11-24 22:19:07,726 | INFO     | --- collectZombieJob: --- 10, [4003058]
[2025-11-24 17:19:40] 2025-11-24 22:19:07,727 | INFO     | zombie collector waiting for pid 4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:07,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 17:19:40] 2025-11-24 22:19:07,727 | INFO     | collected zombie processes
[2025-11-24 17:19:40] 2025-11-24 22:19:07,727 | INFO     | will attempt to kill all subprocesses of pid=4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:08,383 | INFO     | process IDs to be killed: [4003058] (in reverse order)
[2025-11-24 17:19:40] 2025-11-24 22:19:08,568 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 17:19:40] 2025-11-24 22:19:08,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 17:19:40] 2025-11-24 22:19:08,612 | INFO     | did not find any defunct processes belonging to 4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:08,687 | INFO     | did not find any defunct processes belonging to 4003058
[2025-11-24 17:19:40] 2025-11-24 22:19:08,706 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 17:19:40] 2025-11-24 22:19:08,707 | INFO     | ready for new job
[2025-11-24 17:19:40] 2025-11-24 22:19:08,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 17:19:40] 2025-11-24 22:19:08,730 | INFO     | ***************************************
[2025-11-24 17:19:40] 2025-11-24 22:19:08,730 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 17:19:40] 2025-11-24 22:19:08,730 | INFO     | ***************************************
[2025-11-24 17:19:40] 2025-11-24 22:19:08,730 | INFO     | 
[2025-11-24 17:19:40] 2025-11-24 22:19:08,740 | INFO     | architecture information:
[2025-11-24 17:19:40] 2025-11-24 22:19:08,747 | INFO     | executing command: cat /etc/os-release
[2025-11-24 17:19:40] 2025-11-24 22:19:08,813 | INFO     | cat /etc/os-release:
[2025-11-24 17:19:40] NAME="CentOS Linux"
[2025-11-24 17:19:40] VERSION="7 (Core)"
[2025-11-24 17:19:40] ID="centos"
[2025-11-24 17:19:40] ID_LIKE="rhel fedora"
[2025-11-24 17:19:40] VERSION_ID="7"
[2025-11-24 17:19:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 17:19:40] ANSI_COLOR="0;31"
[2025-11-24 17:19:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 17:19:40] HOME_URL="https://www.centos.org/"
[2025-11-24 17:19:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 17:19:40] 
[2025-11-24 17:19:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 17:19:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 17:19:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 17:19:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 17:19:40] 
[2025-11-24 17:19:40] 2025-11-24 22:19:08,813 | INFO     | ***************************************
[2025-11-24 17:19:40] 2025-11-24 22:19:09,316 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 17:19:40] 2025-11-24 22:19:09,394 | INFO     | sufficient remaining disk space (68315774976 B)
[2025-11-24 17:19:40] 2025-11-24 22:19:09,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 17:19:40] 2025-11-24 22:19:09,394 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 17:19:40] 2025-11-24 22:19:09,394 | INFO     | update_server=False
[2025-11-24 17:19:40] 2025-11-24 22:19:09,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 17:19:40] 2025-11-24 22:19:09,611 | INFO     | all data control threads have been joined
[2025-11-24 17:19:40] 2025-11-24 22:19:09,912 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 17:19:40] 2025-11-24 22:19:10,012 | INFO     | all payload control threads have been joined
[2025-11-24 17:19:40] 2025-11-24 22:19:10,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:19:40] 2025-11-24 22:19:10,367 | INFO     | aborting loop
[2025-11-24 17:19:40] 2025-11-24 22:19:10,400 | INFO     | [job] retrieve thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:10,617 | INFO     | [data] control thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:10,682 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:10,703 | INFO     | all job control threads have been joined
[2025-11-24 17:19:40] 2025-11-24 22:19:10,891 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:10,922 | INFO     | [data] copytool_in thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,018 | INFO     | [payload] control thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,072 | INFO     | [payload] validate_post thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,192 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:19:40] 2025-11-24 22:19:11,275 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 17:19:40] 2025-11-24 22:19:11,372 | INFO     | [job] job monitor thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,686 | INFO     | [job] validate thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,713 | INFO     | [payload] failed_post thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,736 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,737 | INFO     | [job] control thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:11,919 | INFO     | [data] copytool_out thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:12,265 | INFO     | [job] queue monitor thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:15,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 17:19:40] 2025-11-24 22:19:29,041 | INFO     | [monitor] cgroup control has ended
[2025-11-24 17:19:40] 2025-11-24 22:19:30,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061453174592)>', '<ExcThread(monitor, started 140060787713792)>']
[2025-11-24 17:19:40] 2025-11-24 22:19:35,410 | INFO     | all workflow threads have been joined
[2025-11-24 17:19:40] 2025-11-24 22:19:35,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 17:19:40] 2025-11-24 22:19:35,411 | INFO     | traces error code: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:35,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 17:19:40] 2025-11-24 22:19:39,358 | INFO     | PID=3968817 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:19:40] 2025-11-24 22:19:39,359 | INFO     | .. there are 26 such processes running
[2025-11-24 17:19:40] 2025-11-24 22:19:39,360 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 17:19:40] 2025-11-24 22:19:39,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 17:19:40] 2025-11-24 22:19:39,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 17:19:40] 2025-11-24 22:19:39,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 17:19:40] 2025-11-24 22:19:39,360 | INFO     | [monitor] control thread has ended
[2025-11-24 17:19:40] 2025-11-24 22:19:40,013 [wrapper] ==== pilot stdout END ====
[2025-11-24 17:19:40] 2025-11-24 22:19:40,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 17:19:40] 2025-11-24 22:19:40,030 [wrapper] pilotpid: 3968817
[2025-11-24 17:19:40] 2025-11-24 22:19:40,048 [wrapper] Pilot exit status: 0
[2025-11-24 17:19:40] 2025-11-24 22:19:40,093 [wrapper] pandaids: 6895346109
[2025-11-24 17:19:40] 2025-11-24 22:19:40,277 [wrapper] cleanup supervisor_pilot 2614296 3968818
[2025-11-24 17:19:40] 2025-11-24 22:19:40,281 [wrapper] Test setup, not cleaning
[2025-11-24 17:19:40] 2025-11-24 22:19:40,302 [wrapper] apfmon messages muted
[2025-11-24 17:19:40] 2025-11-24 22:19:40,313 [wrapper] ==== wrapper stdout END ====
[2025-11-24 17:19:40] 2025-11-24 22:19:40,337 [wrapper] ==== wrapper stderr END ====
[2025-11-24 17:19:40]  *** Error codes and diagnostics ***
[2025-11-24 17:19:40]     "exeErrorCode": 0,
[2025-11-24 17:19:40]     "exeErrorDiag": "",
[2025-11-24 17:19:40]     "pilotErrorCode": 0,
[2025-11-24 17:19:40]     "pilotErrorDiag": "",
[2025-11-24 17:19:40]  *** Listing of results directory ***
[2025-11-24 17:19:40] total 1321484
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:43 pilot3.tar.gz
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 12:52 queuedata.json
[2025-11-24 17:19:40] -rwx------. 1 boincer umatlas     36292 Nov 22 12:53 runpilot2-wrapper.sh
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 17:19:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas 409367315 Nov 23 00:01 EVNT.47483658._000457.pool.root.1
[2025-11-24 17:19:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:01 input.tar.gz
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 00:01 pandaJob.out
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas        57 Nov 23 00:01 setup.sh.local
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas    989784 Nov 23 00:02 agis_schedconf.cvmfs.json
[2025-11-24 17:19:40] drwx------. 5 boincer umatlas      4096 Nov 23 00:02 pilot3
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas       533 Nov 24 16:56 boinc_task_state.xml
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas 897889199 Nov 24 17:17 HITS.47556137._004523.pool.root.1
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas      1059 Nov 24 17:18 memory_monitor_summary.json
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:18 agis_ddmendpoints.agis.ALL.json
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas   3230312 Nov 24 17:18 log.47556137._004523.job.log.tgz.1
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas      8624 Nov 24 17:19 heartbeat.json
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 17:19 init_data.xml
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 17:19 boinc_mmap_file
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas        29 Nov 24 17:19 wrapper_checkpoint.txt
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas       823 Nov 24 17:19 pilotlog.txt
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas        95 Nov 24 17:19 pilot_heartbeat.json
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas  17781403 Nov 24 17:19 log.47556137._004523.job.log.1
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas       353 Nov 24 17:19 output.list
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas       620 Nov 24 17:19 runtime_log
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas  21032960 Nov 24 17:19 result.tar.gz
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas       665 Nov 24 17:19 Y4SLDmpy6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNKKKDmTXswbn.diag
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 17:19 runtime_log.err
[2025-11-24 17:19:40] -rw-r--r--. 1 boincer umatlas     21902 Nov 24 17:19 stderr.txt
[2025-11-24 17:19:40] HITS file was successfully produced:
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas 897889199 Nov 24 17:17 shared/HITS.pool.root.1
[2025-11-24 17:19:40]  *** Contents of shared directory: ***
[2025-11-24 17:19:40] total 1297768
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas 409367315 Nov 23 00:01 ATLAS.root_0
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:01 input.tar.gz
[2025-11-24 17:19:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas 897889199 Nov 24 17:17 HITS.pool.root.1
[2025-11-24 17:19:40] -rw-------. 1 boincer umatlas  21032960 Nov 24 17:19 result.tar.gz
17:19:42 (3955340): run_atlas exited; CPU time 239314.183295
17:19:42 (3955340): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN