Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:07 (1725568): wrapper (7.7.26015): starting
00:03:07 (1725568): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:03:07] Arguments: --nthreads 8
[2025-11-23 00:03:07] Threads: 8
[2025-11-23 00:03:07] Checking for CVMFS
[2025-11-23 00:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:03:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:03:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:03:09] 2.13.2.0 6639 29074 309544 153197 3 283 29452848 40960000 21099 16776704 0 44081060 99.679 36928134 41093 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:03:09] CVMFS is ok
[2025-11-23 00:03:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:03:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:03:09] Further information can be found at the LHC@home message board.
[2025-11-23 00:03:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:03:09] Checking for apptainer binary...
[2025-11-23 00:03:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:03:09] Running /usr/bin/apptainer --version
[2025-11-23 00:03:09] apptainer version 1.4.4-1.el9
[2025-11-23 00:03:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:03:10] c-206-37.aglt2.org
[2025-11-23 00:03:10] apptainer works
[2025-11-23 00:03:10] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:03:10] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:03:10] Starting ATLAS job with PandaID=6895336463
[2025-11-23 00:03:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:01:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:01:58] 2025-11-24 12:00:38,564 | INFO     | time since job start (111423s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:38,892 | INFO     | monitor loop #7332: job 0:6895336463 is in state 'finished'
[2025-11-24 07:01:58] 2025-11-24 12:00:38,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:01:58] 2025-11-24 12:00:40,572 | INFO     | time since job start (111425s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:41,400 | INFO     | monitor loop #7333: job 0:6895336463 is in state 'finished'
[2025-11-24 07:01:58] 2025-11-24 12:00:41,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:01:58] 2025-11-24 12:00:42,579 | INFO     | time since job start (111427s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:43,907 | INFO     | monitor loop #7334: job 0:6895336463 is in state 'finished'
[2025-11-24 07:01:58] 2025-11-24 12:00:43,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:01:58] 2025-11-24 12:00:44,589 | INFO     | time since job start (111429s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:46,411 | INFO     | monitor loop #7335: job 0:6895336463 is in state 'finished'
[2025-11-24 07:01:58] 2025-11-24 12:00:46,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:01:58] 2025-11-24 12:00:46,599 | INFO     | time since job start (111431s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:48,609 | INFO     | time since job start (111433s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:48,921 | INFO     | monitor loop #7336: job 0:6895336463 is in state 'finished'
[2025-11-24 07:01:58] 2025-11-24 12:00:48,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,099 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 07:01:58] 2025-11-24 12:00:50,122 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3287.719656250001
[2025-11-24 07:01:58] 2025-11-24 12:00:50,133 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895336463/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,133 | INFO     | extracted standard info from prmon json
[2025-11-24 07:01:58] 2025-11-24 12:00:50,133 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:01:58] 2025-11-24 12:00:50,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:01:58] 2025-11-24 12:00:50,175 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:01:58] 2025-11-24 12:00:50,179 | INFO     | sum of square deviations: 1887934241948.6167
[2025-11-24 07:01:58] 2025-11-24 12:00:50,298 | INFO     | sum of deviations: 8425028827653.693
[2025-11-24 07:01:58] 2025-11-24 12:00:50,298 | INFO     | mean x: 1763929943.7667031
[2025-11-24 07:01:58] 2025-11-24 12:00:50,298 | INFO     | mean y: 2775666.7387732747
[2025-11-24 07:01:58] 2025-11-24 12:00:50,298 | INFO     | intersect: -7868875949.080853
[2025-11-24 07:01:58] 2025-11-24 12:00:50,305 | INFO     | chi2: 33.49651498977242
[2025-11-24 07:01:58] 2025-11-24 12:00:50,307 | INFO     | sum of square deviations: 1872469938677.6125
[2025-11-24 07:01:58] 2025-11-24 12:00:50,373 | INFO     | sum of deviations: 9058347739121.361
[2025-11-24 07:01:58] 2025-11-24 12:00:50,373 | INFO     | mean x: 1763929791.2756727
[2025-11-24 07:01:58] 2025-11-24 12:00:50,373 | INFO     | mean y: 2781911.863811093
[2025-11-24 07:01:58] 2025-11-24 12:00:50,373 | INFO     | intersect: -8530486957.624739
[2025-11-24 07:01:58] 2025-11-24 12:00:50,375 | INFO     | chi2: 29.648996504684852
[2025-11-24 07:01:58] 2025-11-24 12:00:50,375 | INFO     | current chi2=29.648996504684852 (change=11.48632473038566 %)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,375 | INFO     | right removable region: 1820
[2025-11-24 07:01:58] 2025-11-24 12:00:50,376 | INFO     | sum of square deviations: 1872466300027.6104
[2025-11-24 07:01:58] 2025-11-24 12:00:50,451 | INFO     | sum of deviations: 7779481624538.85
[2025-11-24 07:01:58] 2025-11-24 12:00:50,451 | INFO     | mean x: 1763930096.2756727
[2025-11-24 07:01:58] 2025-11-24 12:00:50,451 | INFO     | mean y: 2782030.671609006
[2025-11-24 07:01:58] 2025-11-24 12:00:50,451 | INFO     | intersect: -7325767364.714195
[2025-11-24 07:01:58] 2025-11-24 12:00:50,453 | INFO     | chi2: 30.15078463685215
[2025-11-24 07:01:58] 2025-11-24 12:00:50,453 | INFO     | current chi2=30.15078463685215 (change=9.988293868606423 %)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,453 | INFO     | left removable region: 10
[2025-11-24 07:01:58] 2025-11-24 12:00:50,459 | INFO     | sum of square deviations: 1838739008136.3635
[2025-11-24 07:01:58] 2025-11-24 12:00:50,620 | INFO     | sum of deviations: 7929082218346.871
[2025-11-24 07:01:58] 2025-11-24 12:00:50,620 | INFO     | mean x: 1763930065.7955801
[2025-11-24 07:01:58] 2025-11-24 12:00:50,620 | INFO     | mean y: 2795933.8861878454
[2025-11-24 07:01:58] 2025-11-24 12:00:50,620 | INFO     | intersect: -7603692239.377124
[2025-11-24 07:01:58] 2025-11-24 12:00:50,621 | INFO     | chi2: 22.3140791926582
[2025-11-24 07:01:58] 2025-11-24 12:00:50,622 | INFO     | current memory leak: 4.31 B/s (using 1810 data points, chi2=22.31)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,625 | INFO     | could have reported an average CPU frequency of 3276 MHz (64 samples)
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | ..............................
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . Timing measurements:
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . get job = 0 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . initial setup = 2 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . payload setup = 18 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . stage-in = 0 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . payload execution = 111346 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . stage-out = 4 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | . log creation = 1 s
[2025-11-24 07:01:58] 2025-11-24 12:00:50,626 | INFO     | ..............................
[2025-11-24 07:01:58] 2025-11-24 12:00:50,657 | INFO     | time since job start (111435s) is within the limit (172800.0s)
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | 
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | job summary report
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | --------------------------------------------------
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | PanDA job id: 6895336463
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | task id: 47556137
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | errors: (none)
[2025-11-24 07:01:58] 2025-11-24 12:00:51,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | pilot state: finished 
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | transexitcode: 0
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | exeerrorcode: 0
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | exeerrordiag: 
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | exitcode: 0
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | exitmsg: OK
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | cpuconsumptiontime: 201120 s
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | nevents: 1000
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | neventsw: 0
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | pid: 1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | pgrp: 1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | corecount: 8
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | event service: False
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | sizes: {0: 2298807, 1: 2298807, 11: 2299125, 22: 2299125, 111369: 2374620, 111374: 2384405, 111376: 2384589, 111402: 2384835}
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | --------------------------------------------------
[2025-11-24 07:01:58] 2025-11-24 12:00:51,067 | INFO     | 
[2025-11-24 07:01:58] 2025-11-24 12:00:51,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 07:01:58] 2025-11-24 12:00:51,307 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,307 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:01:58] 2025-11-24 12:00:51,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:01:58] 2025-11-24 12:00:51,309 | INFO     | job 6895336463 has completed (purged errors)
[2025-11-24 07:01:58] 2025-11-24 12:00:51,309 | INFO     | overall cleanup function is called
[2025-11-24 07:01:58] 2025-11-24 12:00:52,359 | INFO     | --- collectZombieJob: --- 10, [1771950]
[2025-11-24 07:01:58] 2025-11-24 12:00:52,359 | INFO     | zombie collector waiting for pid 1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:52,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:01:58] 2025-11-24 12:00:52,359 | INFO     | collected zombie processes
[2025-11-24 07:01:58] 2025-11-24 12:00:52,359 | INFO     | will attempt to kill all subprocesses of pid=1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:52,987 | INFO     | process IDs to be killed: [1771950] (in reverse order)
[2025-11-24 07:01:58] 2025-11-24 12:00:53,730 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:01:58] 2025-11-24 12:00:53,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:01:58] 2025-11-24 12:00:53,761 | INFO     | did not find any defunct processes belonging to 1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:53,776 | INFO     | did not find any defunct processes belonging to 1771950
[2025-11-24 07:01:58] 2025-11-24 12:00:53,777 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:01:58] 2025-11-24 12:00:53,777 | INFO     | ready for new job
[2025-11-24 07:01:58] 2025-11-24 12:00:53,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:01:58] 2025-11-24 12:00:53,786 | INFO     | ***************************************
[2025-11-24 07:01:58] 2025-11-24 12:00:53,786 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:01:58] 2025-11-24 12:00:53,786 | INFO     | ***************************************
[2025-11-24 07:01:58] 2025-11-24 12:00:53,786 | INFO     | 
[2025-11-24 07:01:58] 2025-11-24 12:00:53,795 | INFO     | architecture information:
[2025-11-24 07:01:58] 2025-11-24 12:00:53,806 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:01:58] 2025-11-24 12:00:53,919 | INFO     | cat /etc/os-release:
[2025-11-24 07:01:58] NAME="CentOS Linux"
[2025-11-24 07:01:58] VERSION="7 (Core)"
[2025-11-24 07:01:58] ID="centos"
[2025-11-24 07:01:58] ID_LIKE="rhel fedora"
[2025-11-24 07:01:58] VERSION_ID="7"
[2025-11-24 07:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:01:58] ANSI_COLOR="0;31"
[2025-11-24 07:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:01:58] HOME_URL="https://www.centos.org/"
[2025-11-24 07:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:01:58] 
[2025-11-24 07:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:01:58] 
[2025-11-24 07:01:58] 2025-11-24 12:00:53,919 | INFO     | ***************************************
[2025-11-24 07:01:58] 2025-11-24 12:00:54,436 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 07:01:58] 2025-11-24 12:00:54,541 | INFO     | sufficient remaining disk space (77490814976 B)
[2025-11-24 07:01:58] 2025-11-24 12:00:54,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:01:58] 2025-11-24 12:00:54,542 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:01:58] 2025-11-24 12:00:54,542 | INFO     | update_server=False
[2025-11-24 07:01:58] 2025-11-24 12:00:54,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:01:58] 2025-11-24 12:00:54,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:01:58] 2025-11-24 12:00:54,726 | INFO     | all data control threads have been joined
[2025-11-24 07:01:58] 2025-11-24 12:00:54,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:01:58] 2025-11-24 12:00:54,945 | INFO     | aborting loop
[2025-11-24 07:01:58] 2025-11-24 12:00:55,370 | INFO     | all payload control threads have been joined
[2025-11-24 07:01:58] 2025-11-24 12:00:55,527 | INFO     | all job control threads have been joined
[2025-11-24 07:01:58] 2025-11-24 12:00:55,549 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:55,731 | INFO     | [data] control thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:55,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:01:58] 2025-11-24 12:00:55,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:01:58] 2025-11-24 12:00:55,951 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,117 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,218 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,346 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,376 | INFO     | [payload] control thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,535 | INFO     | [job] control thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,742 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,861 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,871 | INFO     | [job] validate thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,888 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:56,919 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:57,898 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:00:58,602 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:01:58] 2025-11-24 12:01:24,097 | INFO     | PID=1736099 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:01:58] 2025-11-24 12:01:24,097 | INFO     | .. there are 23 such processes running
[2025-11-24 07:01:58] 2025-11-24 12:01:24,098 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:01:58] 2025-11-24 12:01:24,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:01:58] 2025-11-24 12:01:24,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:01:58] 2025-11-24 12:01:50,024 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:01:58] 2025-11-24 12:01:51,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140427586529088)>', '<ExcThread(monitor, started 140427109857024)>']
[2025-11-24 07:01:58] 2025-11-24 12:01:52,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:01:58] 2025-11-24 12:01:52,326 | INFO     | [monitor] control thread has ended
[2025-11-24 07:01:58] 2025-11-24 12:01:57,002 | INFO     | all workflow threads have been joined
[2025-11-24 07:01:58] 2025-11-24 12:01:57,002 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:01:58] 2025-11-24 12:01:57,002 | INFO     | traces error code: 0
[2025-11-24 07:01:58] 2025-11-24 12:01:57,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:01:58] 2025-11-24 12:01:57,323 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:01:58] 2025-11-24 12:01:57,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:01:58] 2025-11-24 12:01:57,347 [wrapper] pilotpid: 1736099
[2025-11-24 07:01:58] 2025-11-24 12:01:57,350 [wrapper] Pilot exit status: 0
[2025-11-24 07:01:58] 2025-11-24 12:01:57,411 [wrapper] pandaids: 6895336463
[2025-11-24 07:01:58] 2025-11-24 12:01:57,769 [wrapper] cleanup supervisor_pilot 1922842 1736100
[2025-11-24 07:01:58] 2025-11-24 12:01:57,772 [wrapper] Test setup, not cleaning
[2025-11-24 07:01:58] 2025-11-24 12:01:57,775 [wrapper] apfmon messages muted
[2025-11-24 07:01:58] 2025-11-24 12:01:57,777 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:01:58] 2025-11-24 12:01:57,779 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:01:58]  *** Error codes and diagnostics ***
[2025-11-24 07:01:58]     "exeErrorCode": 0,
[2025-11-24 07:01:58]     "exeErrorDiag": "",
[2025-11-24 07:01:58]     "pilotErrorCode": 0,
[2025-11-24 07:01:58]     "pilotErrorDiag": "",
[2025-11-24 07:01:58]  *** Listing of results directory ***
[2025-11-24 07:01:58] total 1331752
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 07:01:58] -rwx------. 1 boincer umatlas     36292 Nov 22 00:42 runpilot2-wrapper.sh
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:42 queuedata.json
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:01:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:03 run_atlas
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:03 job.xml
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas 410750845 Nov 23 00:03 EVNT.47483658._000283.pool.root.1
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 07:01:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:03 shared
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:03 input.tar.gz
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:03 boinc_lockfile
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:03 pandaJob.out
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas        57 Nov 23 00:03 setup.sh.local
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 07:01:58] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas       533 Nov 24 05:51 boinc_task_state.xml
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas 913595614 Nov 24 06:59 HITS.47556137._002798.pool.root.1
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas      1052 Nov 24 07:00 memory_monitor_summary.json
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas   1516227 Nov 24 07:00 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas   2802395 Nov 24 07:00 log.47556137._002798.job.log.tgz.1
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas      7928 Nov 24 07:00 heartbeat.json
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas      6901 Nov 24 07:00 init_data.xml
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas        95 Nov 24 07:01 pilot_heartbeat.json
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 07:01 boinc_mmap_file
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas        29 Nov 24 07:01 wrapper_checkpoint.txt
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas      4824 Nov 24 07:01 pilotlog.txt
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas  14924564 Nov 24 07:01 log.47556137._002798.job.log.1
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas       353 Nov 24 07:01 output.list
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas       620 Nov 24 07:01 runtime_log
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas  17745920 Nov 24 07:01 result.tar.gz
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 07:01 runtime_log.err
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas       664 Nov 24 07:01 6A1MDmSZvg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbzHKDmYIV4Jo.diag
[2025-11-24 07:01:58] -rw-r--r--. 1 boincer umatlas     21536 Nov 24 07:01 stderr.txt
[2025-11-24 07:01:58] HITS file was successfully produced:
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas 913595614 Nov 24 06:59 shared/HITS.pool.root.1
[2025-11-24 07:01:58]  *** Contents of shared directory: ***
[2025-11-24 07:01:58] total 1311244
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas 410750845 Nov 23 00:03 ATLAS.root_0
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 07:01:58] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:03 input.tar.gz
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas 913595614 Nov 24 06:59 HITS.pool.root.1
[2025-11-24 07:01:58] -rw-------. 1 boincer umatlas  17745920 Nov 24 07:01 result.tar.gz
07:01:59 (1725568): run_atlas exited; CPU time 200704.585396
07:01:59 (1725568): called boinc_finish(0)

</stderr_txt>
]]>

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