Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:20 (2584896): wrapper (7.7.26015): starting
00:01:20 (2584896): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:20] Arguments: --nthreads 9
[2025-11-23 00:01:20] Threads: 9
[2025-11-23 00:01:20] Checking for CVMFS
[2025-11-23 00:01:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:01:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:01:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:01:22] 2.13.3.0 5206 2370 239420 153197 1 794 29841561 40960001 49989 16776704 0 20830137 99.824 9100784 29646 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:01:22] CVMFS is ok
[2025-11-23 00:01:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:01:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:01:22] Further information can be found at the LHC@home message board.
[2025-11-23 00:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:01:22] Checking for apptainer binary...
[2025-11-23 00:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:01:22] Running /usr/bin/apptainer --version
[2025-11-23 00:01:22] apptainer version 1.4.4-1.el9
[2025-11-23 00:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:01:23] lc-12-9.aglt2.org
[2025-11-23 00:01:23] apptainer works
[2025-11-23 00:01:23] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:01:23] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:01:23] Starting ATLAS job with PandaID=6895329313
[2025-11-23 00:01:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:12:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:12:51] 2025-11-24 10:11:52,268 | INFO     | time since job start (104970s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:11:54,058 | INFO     | monitor loop #4879: job 0:6895329313 is in state 'finished'
[2025-11-24 05:12:51] 2025-11-24 10:11:54,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:12:51] 2025-11-24 10:11:54,275 | INFO     | time since job start (104972s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:11:56,282 | INFO     | time since job start (104974s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:11:56,563 | INFO     | monitor loop #4880: job 0:6895329313 is in state 'finished'
[2025-11-24 05:12:51] 2025-11-24 10:11:56,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:12:51] 2025-11-24 10:11:58,352 | INFO     | time since job start (104976s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:11:59,068 | INFO     | monitor loop #4881: job 0:6895329313 is in state 'finished'
[2025-11-24 05:12:51] 2025-11-24 10:11:59,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:12:51] 2025-11-24 10:12:00,363 | INFO     | time since job start (104978s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:12:01,573 | INFO     | monitor loop #4882: job 0:6895329313 is in state 'finished'
[2025-11-24 05:12:51] 2025-11-24 10:12:01,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:12:51] 2025-11-24 10:12:02,370 | INFO     | time since job start (104980s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:12:03,064 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 05:12:51] 2025-11-24 10:12:03,077 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2714.8202708333333
[2025-11-24 05:12:51] 2025-11-24 10:12:03,138 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895329313/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:12:51] 2025-11-24 10:12:03,138 | INFO     | extracted standard info from prmon json
[2025-11-24 05:12:51] 2025-11-24 10:12:03,138 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:12:51] 2025-11-24 10:12:03,138 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:12:51] 2025-11-24 10:12:03,234 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:12:51] 2025-11-24 10:12:03,238 | INFO     | sum of square deviations: 1572262165561.7698
[2025-11-24 05:12:51] 2025-11-24 10:12:03,556 | INFO     | sum of deviations: 5750076548993.589
[2025-11-24 05:12:51] 2025-11-24 10:12:03,556 | INFO     | mean x: 1763926682.185681
[2025-11-24 05:12:51] 2025-11-24 10:12:03,557 | INFO     | mean y: 3001121.7316647265
[2025-11-24 05:12:51] 2025-11-24 10:12:03,557 | INFO     | intersect: -6448030819.08716
[2025-11-24 05:12:51] 2025-11-24 10:12:03,584 | INFO     | chi2: 16.930804726640762
[2025-11-24 05:12:51] 2025-11-24 10:12:03,586 | INFO     | sum of square deviations: 1558575737776.1492
[2025-11-24 05:12:51] 2025-11-24 10:12:04,094 | INFO     | sum of deviations: 6338266586942.562
[2025-11-24 05:12:51] 2025-11-24 10:12:04,094 | INFO     | mean x: 1763926529.696439
[2025-11-24 05:12:51] 2025-11-24 10:12:04,094 | INFO     | mean y: 3007674.270286048
[2025-11-24 05:12:51] 2025-11-24 10:12:04,094 | INFO     | intersect: -7170359852.25684
[2025-11-24 05:12:51] 2025-11-24 10:12:04,096 | INFO     | chi2: 13.882337270555116
[2025-11-24 05:12:51] 2025-11-24 10:12:04,096 | INFO     | current chi2=13.882337270555116 (change=18.005449270162906 %)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,097 | INFO     | right removable region: 1712
[2025-11-24 05:12:51] 2025-11-24 10:12:04,111 | INFO     | sum of square deviations: 1558571875256.1492
[2025-11-24 05:12:51] 2025-11-24 10:12:04,126 | INFO     | monitor loop #4883: job 0:6895329313 is in state 'finished'
[2025-11-24 05:12:51] 2025-11-24 10:12:04,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,389 | INFO     | sum of deviations: 5058745346612.762
[2025-11-24 05:12:51] 2025-11-24 10:12:04,389 | INFO     | mean x: 1763926834.696439
[2025-11-24 05:12:51] 2025-11-24 10:12:04,389 | INFO     | mean y: 3008822.3380035027
[2025-11-24 05:12:51] 2025-11-24 10:12:04,390 | INFO     | intersect: -5722268791.38736
[2025-11-24 05:12:51] 2025-11-24 10:12:04,410 | INFO     | time since job start (104982s) is within the limit (172800.0s)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,411 | INFO     | chi2: 13.084574816586516
[2025-11-24 05:12:51] 2025-11-24 10:12:04,411 | INFO     | current chi2=13.084574816586516 (change=22.71734847902517 %)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,411 | INFO     | left removable region: 10
[2025-11-24 05:12:51] 2025-11-24 10:12:04,413 | INFO     | sum of square deviations: 1528738107503.819
[2025-11-24 05:12:51] 2025-11-24 10:12:04,749 | INFO     | sum of deviations: 5236242903590.777
[2025-11-24 05:12:51] 2025-11-24 10:12:04,749 | INFO     | mean x: 1763926804.2197416
[2025-11-24 05:12:51] 2025-11-24 10:12:04,749 | INFO     | mean y: 3022556.393654524
[2025-11-24 05:12:51] 2025-11-24 10:12:04,749 | INFO     | intersect: -6038790076.9884205
[2025-11-24 05:12:51] 2025-11-24 10:12:04,759 | INFO     | chi2: 7.381686343674907
[2025-11-24 05:12:51] 2025-11-24 10:12:04,759 | INFO     | current memory leak: 3.43 B/s (using 1702 data points, chi2=7.38)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,777 | INFO     | could have reported an average CPU frequency of 2697 MHz (60 samples)
[2025-11-24 05:12:51] 2025-11-24 10:12:04,777 | INFO     | ..............................
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . Timing measurements:
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . get job = 0 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . initial setup = 4 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . payload setup = 51 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . stage-in = 0 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . payload execution = 104822 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . stage-out = 7 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | . log creation = 1 s
[2025-11-24 05:12:51] 2025-11-24 10:12:04,778 | INFO     | ..............................
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | 
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | job summary report
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | --------------------------------------------------
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | PanDA job id: 6895329313
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | task id: 47556137
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | errors: (none)
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | pilot state: finished 
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | transexitcode: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | exeerrorcode: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:05,106 | INFO     | exeerrordiag: 
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | exitcode: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | exitmsg: OK
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | cpuconsumptiontime: 262468 s
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | nevents: 1000
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | neventsw: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | pid: 2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | pgrp: 2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | corecount: 9
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | event service: False
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | sizes: {0: 2298579, 1: 2298635, 2: 2298691, 3: 2298890, 14: 2298890, 25: 2298918, 31: 2299336, 36: 2299364, 104878: 2369638, 104879: 2369637, 104886: 2379023, 1049
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | --------------------------------------------------
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | 
[2025-11-24 05:12:51] 2025-11-24 10:12:05,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-24 05:12:51] 2025-11-24 10:12:05,347 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,347 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,347 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,347 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | job 6895329313 has completed (purged errors)
[2025-11-24 05:12:51] 2025-11-24 10:12:05,349 | INFO     | overall cleanup function is called
[2025-11-24 05:12:51] 2025-11-24 10:12:06,410 | INFO     | --- collectZombieJob: --- 10, [2650750]
[2025-11-24 05:12:51] 2025-11-24 10:12:06,411 | INFO     | zombie collector waiting for pid 2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:06,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:12:51] 2025-11-24 10:12:06,411 | INFO     | collected zombie processes
[2025-11-24 05:12:51] 2025-11-24 10:12:06,413 | INFO     | will attempt to kill all subprocesses of pid=2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:09,819 | INFO     | process IDs to be killed: [2650750] (in reverse order)
[2025-11-24 05:12:51] 2025-11-24 10:12:10,174 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:12:51] 2025-11-24 10:12:10,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:12:51] 2025-11-24 10:12:10,262 | INFO     | did not find any defunct processes belonging to 2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:10,374 | INFO     | did not find any defunct processes belonging to 2650750
[2025-11-24 05:12:51] 2025-11-24 10:12:10,379 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:12:51] 2025-11-24 10:12:10,380 | INFO     | ready for new job
[2025-11-24 05:12:51] 2025-11-24 10:12:10,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:12:51] 2025-11-24 10:12:10,399 | INFO     | ***************************************
[2025-11-24 05:12:51] 2025-11-24 10:12:10,399 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:12:51] 2025-11-24 10:12:10,399 | INFO     | ***************************************
[2025-11-24 05:12:51] 2025-11-24 10:12:10,399 | INFO     | 
[2025-11-24 05:12:51] 2025-11-24 10:12:10,417 | INFO     | architecture information:
[2025-11-24 05:12:51] 2025-11-24 10:12:10,422 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:12:51] 2025-11-24 10:12:10,473 | INFO     | cat /etc/os-release:
[2025-11-24 05:12:51] NAME="CentOS Linux"
[2025-11-24 05:12:51] VERSION="7 (Core)"
[2025-11-24 05:12:51] ID="centos"
[2025-11-24 05:12:51] ID_LIKE="rhel fedora"
[2025-11-24 05:12:51] VERSION_ID="7"
[2025-11-24 05:12:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:12:51] ANSI_COLOR="0;31"
[2025-11-24 05:12:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:12:51] HOME_URL="https://www.centos.org/"
[2025-11-24 05:12:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:12:51] 
[2025-11-24 05:12:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:12:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:12:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:12:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:12:51] 
[2025-11-24 05:12:51] 2025-11-24 10:12:10,473 | INFO     | ***************************************
[2025-11-24 05:12:51] 2025-11-24 10:12:10,977 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-24 05:12:51] 2025-11-24 10:12:11,028 | INFO     | sufficient remaining disk space (413793255424 B)
[2025-11-24 05:12:51] 2025-11-24 10:12:11,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:12:51] 2025-11-24 10:12:11,028 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:12:51] 2025-11-24 10:12:11,029 | INFO     | update_server=False
[2025-11-24 05:12:51] 2025-11-24 10:12:11,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:12:51] 2025-11-24 10:12:11,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:12:51] 2025-11-24 10:12:11,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:12:51] 2025-11-24 10:12:11,032 | INFO     | aborting loop
[2025-11-24 05:12:51] 2025-11-24 10:12:11,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:12:51] 2025-11-24 10:12:11,187 | INFO     | all data control threads have been joined
[2025-11-24 05:12:51] 2025-11-24 10:12:11,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:12:51] 2025-11-24 10:12:11,389 | INFO     | all job control threads have been joined
[2025-11-24 05:12:51] 2025-11-24 10:12:12,036 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,038 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,038 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,193 | INFO     | [data] control thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,267 | INFO     | [job] validate thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,328 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,359 | INFO     | all payload control threads have been joined
[2025-11-24 05:12:51] 2025-11-24 10:12:12,360 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,360 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,361 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,401 | INFO     | [job] control thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:12,901 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:13,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:13,059 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:13,218 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:13,366 | INFO     | [payload] control thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:15,073 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:12:51] 2025-11-24 10:12:38,922 | INFO     | PID=2600650 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:12:51] 2025-11-24 10:12:38,922 | INFO     | .. there are 82 such processes running
[2025-11-24 05:12:51] 2025-11-24 10:12:38,922 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:12:51] 2025-11-24 10:12:38,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:12:51] 2025-11-24 10:12:38,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:12:51] 2025-11-24 10:12:44,904 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:12:51] 2025-11-24 10:12:45,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862364342080)>', '<ExcThread(monitor, started 139861558281984)>']
[2025-11-24 05:12:51] 2025-11-24 10:12:45,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:12:51] 2025-11-24 10:12:45,978 | INFO     | [monitor] control thread has ended
[2025-11-24 05:12:51] 2025-11-24 10:12:50,711 | INFO     | all workflow threads have been joined
[2025-11-24 05:12:51] 2025-11-24 10:12:50,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:12:51] 2025-11-24 10:12:50,711 | INFO     | traces error code: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:50,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:12:51] 2025-11-24 10:12:51,118 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:12:51] 2025-11-24 10:12:51,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:12:51] 2025-11-24 10:12:51,157 [wrapper] pilotpid: 2600650
[2025-11-24 05:12:51] 2025-11-24 10:12:51,182 [wrapper] Pilot exit status: 0
[2025-11-24 05:12:51] 2025-11-24 10:12:51,245 [wrapper] pandaids: 6895329313
[2025-11-24 05:12:51] 2025-11-24 10:12:51,376 [wrapper] cleanup supervisor_pilot 3359914 2600651
[2025-11-24 05:12:51] 2025-11-24 10:12:51,387 [wrapper] Test setup, not cleaning
[2025-11-24 05:12:51] 2025-11-24 10:12:51,394 [wrapper] apfmon messages muted
[2025-11-24 05:12:51] 2025-11-24 10:12:51,400 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:12:51] 2025-11-24 10:12:51,408 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:12:51]  *** Error codes and diagnostics ***
[2025-11-24 05:12:51]     "exeErrorCode": 0,
[2025-11-24 05:12:51]     "exeErrorDiag": "",
[2025-11-24 05:12:51]     "pilotErrorCode": 0,
[2025-11-24 05:12:51]     "pilotErrorDiag": "",
[2025-11-24 05:12:51]  *** Listing of results directory ***
[2025-11-24 05:12:51] total 1338700
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:54 pilot3.tar.gz
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:55 queuedata.json
[2025-11-24 05:12:51] -rwx------. 1 boincer umatlas     36292 Nov 21 13:56 runpilot2-wrapper.sh
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:12:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas 411775701 Nov 23 00:01 EVNT.47483658._000110.pool.root.1
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 05:12:51] drwxrwx--x. 2 boincer umatlas        68 Nov 23 00:01 shared
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 00:01 input.tar.gz
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:01 pandaJob.out
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas    989784 Nov 23 00:02 agis_schedconf.cvmfs.json
[2025-11-24 05:12:51] drwx------. 5 boincer umatlas      4096 Nov 23 00:02 pilot3
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas       533 Nov 24 04:49 boinc_task_state.xml
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas 927057435 Nov 24 05:10 HITS.47556137._001096.pool.root.1
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      6799 Nov 24 05:10 init_data.xml
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas      1058 Nov 24 05:11 memory_monitor_summary.json
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas   1526164 Nov 24 05:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas   2669795 Nov 24 05:11 log.47556137._001096.job.log.tgz.1
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas        95 Nov 24 05:11 pilot_heartbeat.json
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas      8637 Nov 24 05:12 heartbeat.json
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas        29 Nov 24 05:12 wrapper_checkpoint.txt
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 05:12 boinc_mmap_file
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas      4825 Nov 24 05:12 pilotlog.txt
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas  11381270 Nov 24 05:12 log.47556137._001096.job.log.1
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas       353 Nov 24 05:12 output.list
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas       620 Nov 24 05:12 runtime_log
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas  14069760 Nov 24 05:12 result.tar.gz
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas       662 Nov 24 05:12 VZ6KDmkTlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmheJKDmWrHZ4m.diag
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      8814 Nov 24 05:12 runtime_log.err
[2025-11-24 05:12:51] -rw-r--r--. 1 boincer umatlas      4096 Nov 24 05:12 stderr.txt
[2025-11-24 05:12:51] HITS file was successfully produced:
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas 927057435 Nov 24 05:10 shared/HITS.pool.root.1
[2025-11-24 05:12:51]  *** Contents of shared directory: ***
[2025-11-24 05:12:51] total 1321796
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas 411775701 Nov 23 00:01 ATLAS.root_0
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 05:12:51] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 00:01 input.tar.gz
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas 927057435 Nov 24 05:10 HITS.pool.root.1
[2025-11-24 05:12:51] -rw-------. 1 boincer umatlas  14069760 Nov 24 05:12 result.tar.gz
05:12:53 (2584896): run_atlas exited; CPU time 267454.501441
05:12:53 (2584896): called boinc_finish(0)

</stderr_txt>
]]>

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