Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:06 (3913797): wrapper (7.7.26015): starting
00:01:06 (3913797): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:01:06] Arguments: --nthreads 9
[2025-11-24 00:01:06] Threads: 9
[2025-11-24 00:01:06] Checking for CVMFS
[2025-11-24 00:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:01:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:01:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:09] 2.13.3.0 11066 26724 328412 153233 2 71 31582874 32935937 21134 16776704 0 74865544 99.444 104406312 38921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:09] CVMFS is ok
[2025-11-24 00:01:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:09] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:09] Checking for apptainer binary...
[2025-11-24 00:01:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:09] Running /usr/bin/apptainer --version
[2025-11-24 00:01:09] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:10] c6-1-24-4.aglt2.org
[2025-11-24 00:01:10] apptainer works
[2025-11-24 00:01:10] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:01:10] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:01:10] Starting ATLAS job with PandaID=6895336838
[2025-11-24 00:01:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:59:33]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:59:33] 2025-11-25 03:58:54,282 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 22:59:33] 2025-11-25 03:58:55,032 | INFO     | monitor loop #4818: job 0:6895336838 is in state 'finished'
[2025-11-24 22:59:33] 2025-11-25 03:58:55,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:59:33] 2025-11-25 03:58:55,841 | INFO     | time since job start (82567s) is within the limit (172800.0s)
[2025-11-24 22:59:33] 2025-11-25 03:58:57,544 | INFO     | monitor loop #4819: job 0:6895336838 is in state 'finished'
[2025-11-24 22:59:33] 2025-11-25 03:58:57,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:59:33] 2025-11-25 03:58:57,848 | INFO     | time since job start (82569s) is within the limit (172800.0s)
[2025-11-24 22:59:33] 2025-11-25 03:58:59,854 | INFO     | time since job start (82571s) is within the limit (172800.0s)
[2025-11-24 22:59:33] 2025-11-25 03:59:00,050 | INFO     | monitor loop #4820: job 0:6895336838 is in state 'finished'
[2025-11-24 22:59:33] 2025-11-25 03:59:00,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,296 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 22:59:33] 2025-11-25 03:59:01,301 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2936.947696428572
[2025-11-24 22:59:33] 2025-11-25 03:59:01,310 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895336838/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,311 | INFO     | extracted standard info from prmon json
[2025-11-24 22:59:33] 2025-11-25 03:59:01,311 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:59:33] 2025-11-25 03:59:01,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:59:33] 2025-11-25 03:59:01,330 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:59:33] 2025-11-25 03:59:01,331 | INFO     | sum of square deviations: 764591772328.0043
[2025-11-24 22:59:33] 2025-11-25 03:59:01,361 | INFO     | sum of deviations: 6963595779113.057
[2025-11-24 22:59:33] 2025-11-25 03:59:01,361 | INFO     | mean x: 1764001946.6380458
[2025-11-24 22:59:33] 2025-11-25 03:59:01,361 | INFO     | mean y: 3036814.294596595
[2025-11-24 22:59:33] 2025-11-25 03:59:01,361 | INFO     | intersect: -16062786746.106276
[2025-11-24 22:59:33] 2025-11-25 03:59:01,363 | INFO     | chi2: 17.903370055473907
[2025-11-24 22:59:33] 2025-11-25 03:59:01,365 | INFO     | sum of square deviations: 756135599182.5477
[2025-11-24 22:59:33] 2025-11-25 03:59:01,397 | INFO     | sum of deviations: 7461694780690.903
[2025-11-24 22:59:33] 2025-11-25 03:59:01,398 | INFO     | mean x: 1764001794.1552749
[2025-11-24 22:59:33] 2025-11-25 03:59:01,398 | INFO     | mean y: 3045795.7325408617
[2025-11-24 22:59:33] 2025-11-25 03:59:01,398 | INFO     | intersect: -17404470785.694942
[2025-11-24 22:59:33] 2025-11-25 03:59:01,400 | INFO     | chi2: 14.528041919895168
[2025-11-24 22:59:33] 2025-11-25 03:59:01,400 | INFO     | current chi2=14.528041919895168 (change=18.853032278952092 %)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,400 | INFO     | right removable region: 1345
[2025-11-24 22:59:33] 2025-11-25 03:59:01,401 | INFO     | sum of square deviations: 756131776922.5476
[2025-11-24 22:59:33] 2025-11-25 03:59:01,434 | INFO     | sum of deviations: 6375353492892.887
[2025-11-24 22:59:33] 2025-11-25 03:59:01,435 | INFO     | mean x: 1764002099.1552749
[2025-11-24 22:59:33] 2025-11-25 03:59:01,435 | INFO     | mean y: 3047418.0245170877
[2025-11-24 22:59:33] 2025-11-25 03:59:01,435 | INFO     | intersect: -14870202572.991182
[2025-11-24 22:59:33] 2025-11-25 03:59:01,436 | INFO     | chi2: 13.399674672976332
[2025-11-24 22:59:33] 2025-11-25 03:59:01,436 | INFO     | current chi2=13.399674672976332 (change=25.15557332805386 %)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,438 | INFO     | sum of square deviations: 747734551569.9735
[2025-11-24 22:59:33] 2025-11-25 03:59:01,470 | INFO     | sum of deviations: 5875650556767.869
[2025-11-24 22:59:33] 2025-11-25 03:59:01,470 | INFO     | mean x: 1764002251.671141
[2025-11-24 22:59:33] 2025-11-25 03:59:01,470 | INFO     | mean y: 3056493.9112602537
[2025-11-24 22:59:33] 2025-11-25 03:59:01,470 | INFO     | intersect: -13858361024.390196
[2025-11-24 22:59:33] 2025-11-25 03:59:01,472 | INFO     | chi2: 10.322153976105959
[2025-11-24 22:59:33] 2025-11-25 03:59:01,472 | INFO     | current chi2=10.322153976105959 (change=22.96712996381124 %)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,472 | INFO     | left removable region: 20
[2025-11-24 22:59:33] 2025-11-25 03:59:01,473 | INFO     | sum of square deviations: 721285819522.4529
[2025-11-24 22:59:33] 2025-11-25 03:59:01,506 | INFO     | sum of deviations: 5560427991369.251
[2025-11-24 22:59:33] 2025-11-25 03:59:01,506 | INFO     | mean x: 1764002373.7245283
[2025-11-24 22:59:33] 2025-11-25 03:59:01,506 | INFO     | mean y: 3082646.1924528303
[2025-11-24 22:59:33] 2025-11-25 03:59:01,506 | INFO     | intersect: -13595698738.6873
[2025-11-24 22:59:33] 2025-11-25 03:59:01,507 | INFO     | chi2: 2.080111139251154
[2025-11-24 22:59:33] 2025-11-25 03:59:01,508 | INFO     | current memory leak: 7.71 B/s (using 1325 data points, chi2=2.08)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | could have reported an average CPU frequency of 2888 MHz (48 samples)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | ..............................
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . Timing measurements:
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . get job = 0 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . initial setup = 6 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . payload setup = 64 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . stage-in = 0 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,510 | INFO     | . payload execution = 82397 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,511 | INFO     | . stage-out = 4 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,511 | INFO     | . log creation = 0 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,511 | INFO     | ..............................
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | 
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | job summary report
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | --------------------------------------------------
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | PanDA job id: 6895336838
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | task id: 47556137
[2025-11-24 22:59:33] 2025-11-25 03:59:01,603 | INFO     | errors: (none)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | pilot state: finished 
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | transexitcode: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | exeerrorcode: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | exeerrordiag: 
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | exitcode: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | exitmsg: OK
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | cpuconsumptiontime: 253475 s
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | nevents: 1000
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | neventsw: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | pid: 3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | pgrp: 3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | corecount: 9
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | event service: False
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | sizes: {0: 2298635, 1: 2298663, 2: 2298663, 3: 2298834, 4: 2298862, 15: 2298890, 27: 2299046, 38: 2299074, 42: 2299364, 51: 2299420, 82466: 2362530, 82470: 2372399
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | --------------------------------------------------
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | 
[2025-11-24 22:59:33] 2025-11-25 03:59:01,604 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-24 22:59:33] 2025-11-25 03:59:01,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:59:33] 2025-11-25 03:59:01,628 | INFO     | job 6895336838 has completed (purged errors)
[2025-11-24 22:59:33] 2025-11-25 03:59:01,634 | INFO     | overall cleanup function is called
[2025-11-24 22:59:33] 2025-11-25 03:59:02,655 | INFO     | --- collectZombieJob: --- 10, [3929192]
[2025-11-24 22:59:33] 2025-11-25 03:59:02,655 | INFO     | zombie collector waiting for pid 3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:02,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:59:33] 2025-11-25 03:59:02,655 | INFO     | collected zombie processes
[2025-11-24 22:59:33] 2025-11-25 03:59:02,656 | INFO     | will attempt to kill all subprocesses of pid=3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:02,995 | INFO     | process IDs to be killed: [3929192] (in reverse order)
[2025-11-24 22:59:33] 2025-11-25 03:59:03,108 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:59:33] 2025-11-25 03:59:03,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:59:33] 2025-11-25 03:59:03,122 | INFO     | did not find any defunct processes belonging to 3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:03,135 | INFO     | did not find any defunct processes belonging to 3929192
[2025-11-24 22:59:33] 2025-11-25 03:59:03,136 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:59:33] 2025-11-25 03:59:03,136 | INFO     | ready for new job
[2025-11-24 22:59:33] 2025-11-25 03:59:03,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:59:33] 2025-11-25 03:59:03,142 | INFO     | ***************************************
[2025-11-24 22:59:33] 2025-11-25 03:59:03,142 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:59:33] 2025-11-25 03:59:03,142 | INFO     | ***************************************
[2025-11-24 22:59:33] 2025-11-25 03:59:03,142 | INFO     | 
[2025-11-24 22:59:33] 2025-11-25 03:59:03,145 | INFO     | architecture information:
[2025-11-24 22:59:33] 2025-11-25 03:59:03,146 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:59:33] 2025-11-25 03:59:03,163 | INFO     | cat /etc/os-release:
[2025-11-24 22:59:33] NAME="CentOS Linux"
[2025-11-24 22:59:33] VERSION="7 (Core)"
[2025-11-24 22:59:33] ID="centos"
[2025-11-24 22:59:33] ID_LIKE="rhel fedora"
[2025-11-24 22:59:33] VERSION_ID="7"
[2025-11-24 22:59:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:59:33] ANSI_COLOR="0;31"
[2025-11-24 22:59:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:59:33] HOME_URL="https://www.centos.org/"
[2025-11-24 22:59:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:59:33] 
[2025-11-24 22:59:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:59:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:59:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:59:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:59:33] 
[2025-11-24 22:59:33] 2025-11-25 03:59:03,163 | INFO     | ***************************************
[2025-11-24 22:59:33] 2025-11-25 03:59:03,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-24 22:59:33] 2025-11-25 03:59:03,727 | INFO     | sufficient remaining disk space (72934752256 B)
[2025-11-24 22:59:33] 2025-11-25 03:59:03,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:59:33] 2025-11-25 03:59:03,727 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:59:33] 2025-11-25 03:59:03,727 | INFO     | update_server=False
[2025-11-24 22:59:33] 2025-11-25 03:59:03,727 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:59:33] 2025-11-25 03:59:03,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:59:33] 2025-11-25 03:59:03,728 | INFO     | aborting loop
[2025-11-24 22:59:33] 2025-11-25 03:59:03,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:59:33] 2025-11-25 03:59:03,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:59:33] 2025-11-25 03:59:03,733 | INFO     | all data control threads have been joined
[2025-11-24 22:59:33] 2025-11-25 03:59:04,075 | INFO     | all payload control threads have been joined
[2025-11-24 22:59:33] 2025-11-25 03:59:04,501 | INFO     | all job control threads have been joined
[2025-11-24 22:59:33] 2025-11-25 03:59:04,733 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:04,739 | INFO     | [data] control thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:04,743 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,081 | INFO     | [payload] control thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,393 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,507 | INFO     | [job] control thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,748 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,765 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,833 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,876 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,934 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:05,998 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:06,016 | INFO     | [job] validate thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:06,221 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:06,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:59:33] 2025-11-25 03:59:07,629 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:07,751 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:59:33] 2025-11-25 03:59:22,401 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:59:33] 2025-11-25 03:59:22,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114768815936)>', '<ExcThread(monitor, started 140114407696128)>']
[2025-11-24 22:59:33] 2025-11-25 03:59:27,993 | INFO     | all workflow threads have been joined
[2025-11-24 22:59:33] 2025-11-25 03:59:27,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:59:33] 2025-11-25 03:59:27,994 | INFO     | traces error code: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:27,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:59:33] 2025-11-25 03:59:33,476 | INFO     | PID=3918702 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | INFO     | .. there are 29 such processes running
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:59:33] 2025-11-25 03:59:33,477 | INFO     | [monitor] control thread has ended
[2025-11-24 22:59:33] 2025-11-25 03:59:33,656 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:59:33] 2025-11-25 03:59:33,675 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:59:33] 2025-11-25 03:59:33,696 [wrapper] pilotpid: 3918702
[2025-11-24 22:59:33] 2025-11-25 03:59:33,699 [wrapper] Pilot exit status: 0
[2025-11-24 22:59:33] 2025-11-25 03:59:33,717 [wrapper] pandaids: 6895336838
[2025-11-24 22:59:33] 2025-11-25 03:59:33,822 [wrapper] cleanup supervisor_pilot 3552575 3918703
[2025-11-24 22:59:33] 2025-11-25 03:59:33,830 [wrapper] Test setup, not cleaning
[2025-11-24 22:59:33] 2025-11-25 03:59:33,835 [wrapper] apfmon messages muted
[2025-11-24 22:59:33] 2025-11-25 03:59:33,838 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:59:33] 2025-11-25 03:59:33,841 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:59:33]  *** Error codes and diagnostics ***
[2025-11-24 22:59:33]     "exeErrorCode": 0,
[2025-11-24 22:59:33]     "exeErrorDiag": "",
[2025-11-24 22:59:33]     "pilotErrorCode": 0,
[2025-11-24 22:59:33]     "pilotErrorDiag": "",
[2025-11-24 22:59:33]  *** Listing of results directory ***
[2025-11-24 22:59:33] total 1327076
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 22:59:33] -rwx------. 1 boincer umatlas     36292 Nov 22 00:41 runpilot2-wrapper.sh
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:41 queuedata.json
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:59:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas 410190027 Nov 24 00:01 EVNT.47483658._000285.pool.root.1
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 22:59:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:01 input.tar.gz
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:01 pandaJob.out
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-24 22:59:33] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas       533 Nov 24 22:47 boinc_task_state.xml
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 22:56 init_data.xml
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas 919336921 Nov 24 22:58 HITS.47556137._002818.pool.root.1
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas      1063 Nov 24 22:58 memory_monitor_summary.json
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas        95 Nov 24 22:58 pilot_heartbeat.json
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas   1516227 Nov 24 22:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas   2498579 Nov 24 22:58 log.47556137._002818.job.log.tgz.1
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas      8628 Nov 24 22:59 heartbeat.json
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 22:59 boinc_mmap_file
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas        29 Nov 24 22:59 wrapper_checkpoint.txt
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas       823 Nov 24 22:59 pilotlog.txt
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas  10243661 Nov 24 22:59 log.47556137._002818.job.log.1
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas       353 Nov 24 22:59 output.list
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas       620 Nov 24 22:59 runtime_log
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas  12759040 Nov 24 22:59 result.tar.gz
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas       661 Nov 24 22:59 tfjMDmHYvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA0JKDmzZ0rUm.diag
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 22:59 runtime_log.err
[2025-11-24 22:59:33] -rw-r--r--. 1 boincer umatlas     21705 Nov 24 22:59 stderr.txt
[2025-11-24 22:59:33] HITS file was successfully produced:
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas 919336921 Nov 24 22:58 shared/HITS.pool.root.1
[2025-11-24 22:59:33]  *** Contents of shared directory: ***
[2025-11-24 22:59:33] total 1311436
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas 410190027 Nov 24 00:01 ATLAS.root_0
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 22:59:33] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:01 input.tar.gz
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas 919336921 Nov 24 22:58 HITS.pool.root.1
[2025-11-24 22:59:33] -rw-------. 1 boincer umatlas  12759040 Nov 24 22:59 result.tar.gz
22:59:56 (3913797): run_atlas exited; CPU time 254663.316667
22:59:56 (3913797): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN