Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:03 (3518898): wrapper (7.7.26015): starting
00:03:03 (3518898): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:03:03] Arguments: --nthreads 8
[2025-11-23 00:03:03] Threads: 8
[2025-11-23 00:03:03] Checking for CVMFS
[2025-11-23 00:03:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:03:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:03:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:03:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:03:04] 2.13.2.0 6956 29000 446180 153197 3 643 21387087 40960000 17239 16776704 0 109252008 99.653 88260684 37132 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:03:04] CVMFS is ok
[2025-11-23 00:03:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:03:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:03:04] Further information can be found at the LHC@home message board.
[2025-11-23 00:03:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:03:04] Checking for apptainer binary...
[2025-11-23 00:03:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:03:04] Running /usr/bin/apptainer --version
[2025-11-23 00:03:04] apptainer version 1.4.4-1.el9
[2025-11-23 00:03:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:03:05] c-206-34.aglt2.org
[2025-11-23 00:03:05] apptainer works
[2025-11-23 00:03:05] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:03:05] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:03:05] Starting ATLAS job with PandaID=6894287413
[2025-11-23 00:03:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:10:34]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:10:34] 2025-11-24 05:09:16,920 | INFO     | time since job start (86740s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:18,808 | INFO     | monitor loop #5194: job 0:6894287413 is in state 'finished'
[2025-11-24 00:10:34] 2025-11-24 05:09:18,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:10:34] 2025-11-24 05:09:18,926 | INFO     | time since job start (86742s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:20,934 | INFO     | time since job start (86744s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:21,313 | INFO     | monitor loop #5195: job 0:6894287413 is in state 'finished'
[2025-11-24 00:10:34] 2025-11-24 05:09:21,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:10:34] 2025-11-24 05:09:22,945 | INFO     | time since job start (86746s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:23,818 | INFO     | monitor loop #5196: job 0:6894287413 is in state 'finished'
[2025-11-24 00:10:34] 2025-11-24 05:09:23,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:10:34] 2025-11-24 05:09:24,950 | INFO     | time since job start (86748s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:26,323 | INFO     | monitor loop #5197: job 0:6894287413 is in state 'finished'
[2025-11-24 00:10:34] 2025-11-24 05:09:26,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:10:34] 2025-11-24 05:09:26,956 | INFO     | time since job start (86750s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:28,826 | INFO     | monitor loop #5198: job 0:6894287413 is in state 'finished'
[2025-11-24 00:10:34] 2025-11-24 05:09:28,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:10:34] 2025-11-24 05:09:28,966 | INFO     | time since job start (86752s) is within the limit (172800.0s)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,637 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 00:10:34] 2025-11-24 05:09:29,642 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3243.39090625
[2025-11-24 00:10:34] 2025-11-24 05:09:29,654 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6894287413/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,655 | INFO     | extracted standard info from prmon json
[2025-11-24 00:10:34] 2025-11-24 05:09:29,655 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:10:34] 2025-11-24 05:09:29,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:10:34] 2025-11-24 05:09:29,674 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:10:34] 2025-11-24 05:09:29,677 | INFO     | sum of square deviations: 889640376552.8818
[2025-11-24 00:10:34] 2025-11-24 05:09:29,720 | INFO     | sum of deviations: 3013576381903.3423
[2025-11-24 00:10:34] 2025-11-24 05:09:29,721 | INFO     | mean x: 1763917584.0091486
[2025-11-24 00:10:34] 2025-11-24 05:09:29,721 | INFO     | mean y: 2889274.4349049963
[2025-11-24 00:10:34] 2025-11-24 05:09:29,721 | INFO     | intersect: -5972222142.372513
[2025-11-24 00:10:34] 2025-11-24 05:09:29,722 | INFO     | chi2: 17.60450369180243
[2025-11-24 00:10:34] 2025-11-24 05:09:29,724 | INFO     | sum of square deviations: 880282695907.4467
[2025-11-24 00:10:34] 2025-11-24 05:09:29,776 | INFO     | sum of deviations: 3484260135378.4336
[2025-11-24 00:10:34] 2025-11-24 05:09:29,776 | INFO     | mean x: 1763917431.519774
[2025-11-24 00:10:34] 2025-11-24 05:09:29,776 | INFO     | mean y: 2896943.984463277
[2025-11-24 00:10:34] 2025-11-24 05:09:29,776 | INFO     | intersect: -6978891085.380201
[2025-11-24 00:10:34] 2025-11-24 05:09:29,778 | INFO     | chi2: 14.405628632281644
[2025-11-24 00:10:34] 2025-11-24 05:09:29,778 | INFO     | current chi2=14.405628632281644 (change=18.17077672578949 %)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,778 | INFO     | right removable region: 1415
[2025-11-24 00:10:34] 2025-11-24 05:09:29,779 | INFO     | sum of square deviations: 880280173989.4838
[2025-11-24 00:10:34] 2025-11-24 05:09:29,820 | INFO     | sum of deviations: 2607131333322.8228
[2025-11-24 00:10:34] 2025-11-24 05:09:29,820 | INFO     | mean x: 1763917736.5190678
[2025-11-24 00:10:34] 2025-11-24 05:09:29,820 | INFO     | mean y: 2895891.1920903954
[2025-11-24 00:10:34] 2025-11-24 05:09:29,820 | INFO     | intersect: -5221310374.230027
[2025-11-24 00:10:34] 2025-11-24 05:09:29,821 | INFO     | chi2: 15.269269948480085
[2025-11-24 00:10:34] 2025-11-24 05:09:29,821 | INFO     | current chi2=15.269269948480085 (change=13.264979145136321 %)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,822 | INFO     | left removable region: 10
[2025-11-24 00:10:34] 2025-11-24 05:09:29,823 | INFO     | sum of square deviations: 859922862118.076
[2025-11-24 00:10:34] 2025-11-24 05:09:29,863 | INFO     | sum of deviations: 3042247967076.874
[2025-11-24 00:10:34] 2025-11-24 05:09:29,863 | INFO     | mean x: 1763917706.0370107
[2025-11-24 00:10:34] 2025-11-24 05:09:29,863 | INFO     | mean y: 2907251.6177935945
[2025-11-24 00:10:34] 2025-11-24 05:09:29,863 | INFO     | intersect: -6237507199.120644
[2025-11-24 00:10:34] 2025-11-24 05:09:29,865 | INFO     | chi2: 11.333772492887242
[2025-11-24 00:10:34] 2025-11-24 05:09:29,865 | INFO     | current memory leak: 3.54 B/s (using 1405 data points, chi2=11.33)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | could have reported an average CPU frequency of 3277 MHz (51 samples)
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | ..............................
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . Timing measurements:
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . get job = 0 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . initial setup = 2 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . payload setup = 16 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . stage-in = 0 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . payload execution = 86687 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . stage-out = 6 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | . log creation = 1 s
[2025-11-24 00:10:34] 2025-11-24 05:09:29,867 | INFO     | ..............................
[2025-11-24 00:10:34] 2025-11-24 05:09:30,043 | INFO     | 
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | job summary report
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | --------------------------------------------------
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | PanDA job id: 6894287413
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | task id: 47533967
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | errors: (none)
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | pilot state: finished 
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | transexitcode: 0
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | exeerrorcode: 0
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | exeerrordiag: 
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | exitcode: 0
[2025-11-24 00:10:34] 2025-11-24 05:09:30,060 | INFO     | exitmsg: OK
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | cpuconsumptiontime: 194209 s
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | nevents: 1000
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | neventsw: 0
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | pid: 3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | pgrp: 3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | corecount: 8
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | event service: False
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | sizes: {0: 2298806, 10: 2299068, 11: 2299096, 86707: 2363720, 86708: 2363719, 86714: 2372769, 86715: 2372953, 86732: 2373199}
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | --------------------------------------------------
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | 
[2025-11-24 00:10:34] 2025-11-24 05:09:30,061 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-24 00:10:34] 2025-11-24 05:09:30,116 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | job 6894287413 has completed (purged errors)
[2025-11-24 00:10:34] 2025-11-24 05:09:30,118 | INFO     | overall cleanup function is called
[2025-11-24 00:10:34] 2025-11-24 05:09:31,341 | INFO     | --- collectZombieJob: --- 10, [3559582]
[2025-11-24 00:10:34] 2025-11-24 05:09:31,341 | INFO     | zombie collector waiting for pid 3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:31,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:10:34] 2025-11-24 05:09:31,342 | INFO     | collected zombie processes
[2025-11-24 00:10:34] 2025-11-24 05:09:31,342 | INFO     | will attempt to kill all subprocesses of pid=3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:32,014 | INFO     | process IDs to be killed: [3559582] (in reverse order)
[2025-11-24 00:10:34] 2025-11-24 05:09:32,412 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:10:34] 2025-11-24 05:09:32,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:10:34] 2025-11-24 05:09:32,443 | INFO     | did not find any defunct processes belonging to 3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:32,468 | INFO     | did not find any defunct processes belonging to 3559582
[2025-11-24 00:10:34] 2025-11-24 05:09:32,473 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:10:34] 2025-11-24 05:09:32,473 | INFO     | ready for new job
[2025-11-24 00:10:34] 2025-11-24 05:09:32,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:10:34] 2025-11-24 05:09:32,495 | INFO     | ***************************************
[2025-11-24 00:10:34] 2025-11-24 05:09:32,507 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:10:34] 2025-11-24 05:09:32,507 | INFO     | ***************************************
[2025-11-24 00:10:34] 2025-11-24 05:09:32,507 | INFO     | 
[2025-11-24 00:10:34] 2025-11-24 05:09:32,525 | INFO     | architecture information:
[2025-11-24 00:10:34] 2025-11-24 05:09:32,541 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:10:34] 2025-11-24 05:09:32,735 | INFO     | cat /etc/os-release:
[2025-11-24 00:10:34] NAME="CentOS Linux"
[2025-11-24 00:10:34] VERSION="7 (Core)"
[2025-11-24 00:10:34] ID="centos"
[2025-11-24 00:10:34] ID_LIKE="rhel fedora"
[2025-11-24 00:10:34] VERSION_ID="7"
[2025-11-24 00:10:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:10:34] ANSI_COLOR="0;31"
[2025-11-24 00:10:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:10:34] HOME_URL="https://www.centos.org/"
[2025-11-24 00:10:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:10:34] 
[2025-11-24 00:10:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:10:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:10:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:10:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:10:34] 
[2025-11-24 00:10:34] 2025-11-24 05:09:32,735 | INFO     | ***************************************
[2025-11-24 00:10:34] 2025-11-24 05:09:33,239 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-24 00:10:34] 2025-11-24 05:09:33,320 | INFO     | sufficient remaining disk space (79396077568 B)
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | INFO     | update_server=False
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:10:34] 2025-11-24 05:09:33,321 | INFO     | aborting loop
[2025-11-24 00:10:34] 2025-11-24 05:09:33,783 | INFO     | all job control threads have been joined
[2025-11-24 00:10:34] 2025-11-24 05:09:34,136 | INFO     | all payload control threads have been joined
[2025-11-24 00:10:34] 2025-11-24 05:09:34,326 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,338 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,412 | INFO     | all data control threads have been joined
[2025-11-24 00:10:34] 2025-11-24 05:09:34,796 | INFO     | [job] control thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,975 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,990 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:34,999 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:10:34] 2025-11-24 05:09:35,155 | INFO     | [payload] control thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,206 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,330 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,418 | INFO     | [data] control thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,712 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,802 | INFO     | [job] validate thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:35,844 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:36,043 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:09:36,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:10:34] 2025-11-24 05:09:40,640 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:10:34] 2025-11-24 05:10:02,806 | INFO     | PID=3531001 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 00:10:34] 2025-11-24 05:10:02,806 | INFO     | .. there are 20 such processes running
[2025-11-24 00:10:34] 2025-11-24 05:10:02,806 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:10:34] 2025-11-24 05:10:02,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:10:34] 2025-11-24 05:10:02,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:10:34] 2025-11-24 05:10:11,671 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:10:34] 2025-11-24 05:10:11,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656492738368)>', '<ExcThread(monitor, started 140655976228608)>']
[2025-11-24 00:10:34] 2025-11-24 05:10:11,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:10:34] 2025-11-24 05:10:11,868 | INFO     | [monitor] control thread has ended
[2025-11-24 00:10:34] 2025-11-24 05:10:16,780 | INFO     | all workflow threads have been joined
[2025-11-24 00:10:34] 2025-11-24 05:10:16,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:10:34] 2025-11-24 05:10:16,781 | INFO     | traces error code: 0
[2025-11-24 00:10:34] 2025-11-24 05:10:16,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:10:34] 2025-11-24 05:10:17,028 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:10:34] 2025-11-24 05:10:17,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:10:34] 2025-11-24 05:10:17,069 [wrapper] pilotpid: 3531001
[2025-11-24 00:10:34] 2025-11-24 05:10:17,095 [wrapper] Pilot exit status: 0
[2025-11-24 00:10:34] 2025-11-24 05:10:17,143 [wrapper] pandaids: 6894287413
[2025-11-24 00:10:34] 2025-11-24 05:10:17,222 [wrapper] cleanup supervisor_pilot 2816191 3531002
[2025-11-24 00:10:34] 2025-11-24 05:10:17,225 [wrapper] Test setup, not cleaning
[2025-11-24 00:10:34] 2025-11-24 05:10:17,227 [wrapper] apfmon messages muted
[2025-11-24 00:10:34] 2025-11-24 05:10:17,233 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:10:34] 2025-11-24 05:10:17,245 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:10:34]  *** Error codes and diagnostics ***
[2025-11-24 00:10:34]     "exeErrorCode": 0,
[2025-11-24 00:10:34]     "exeErrorDiag": "",
[2025-11-24 00:10:34]     "pilotErrorCode": 0,
[2025-11-24 00:10:34]     "pilotErrorDiag": "",
[2025-11-24 00:10:34]  *** Listing of results directory ***
[2025-11-24 00:10:34] total 1313676
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 05:54 queuedata.json
[2025-11-24 00:10:34] -rwx------. 1 boincer umatlas     36292 Nov 21 05:54 runpilot2-wrapper.sh
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:10:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:03 run_atlas
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:03 job.xml
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas 411106483 Nov 23 00:03 EVNT.47493127._002381.pool.root.1
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 00:10:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:03 shared
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:03 input.tar.gz
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:03 boinc_lockfile
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:03 pandaJob.out
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas        57 Nov 23 00:03 setup.sh.local
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 00:10:34] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas       532 Nov 23 23:45 boinc_task_state.xml
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas      6904 Nov 24 00:01 init_data.xml
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas 903340161 Nov 24 00:07 HITS.47533967._003527.pool.root.1
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas      1051 Nov 24 00:09 memory_monitor_summary.json
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas   1526164 Nov 24 00:09 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas   2437211 Nov 24 00:09 log.47533967._003527.job.log.tgz.1
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas        95 Nov 24 00:09 pilot_heartbeat.json
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas      8577 Nov 24 00:09 heartbeat.json
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas      4824 Nov 24 00:10 pilotlog.txt
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas  10973471 Nov 24 00:10 log.47533967._003527.job.log.1
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas       353 Nov 24 00:10 output.list
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas       620 Nov 24 00:10 runtime_log
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas  13434880 Nov 24 00:10 result.tar.gz
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 00:10 runtime_log.err
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas       661 Nov 24 00:10 CjxNDmsxdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuIJKDmFThoHn.diag
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 00:10 boinc_mmap_file
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas        28 Nov 24 00:10 wrapper_checkpoint.txt
[2025-11-24 00:10:34] -rw-r--r--. 1 boincer umatlas     21775 Nov 24 00:10 stderr.txt
[2025-11-24 00:10:34] HITS file was successfully produced:
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas 903340161 Nov 24 00:07 shared/HITS.pool.root.1
[2025-11-24 00:10:34]  *** Contents of shared directory: ***
[2025-11-24 00:10:34] total 1297368
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas 411106483 Nov 23 00:03 ATLAS.root_0
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 00:10:34] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:03 input.tar.gz
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas 903340161 Nov 24 00:07 HITS.pool.root.1
[2025-11-24 00:10:34] -rw-------. 1 boincer umatlas  13434880 Nov 24 00:10 result.tar.gz
00:10:36 (3518898): run_atlas exited; CPU time 194065.577411
00:10:36 (3518898): called boinc_finish(0)

</stderr_txt>
]]>

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