Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:31:40 (676691): wrapper (7.7.26015): starting
20:31:40 (676691): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:31:40] Arguments: --nthreads 8
[2025-11-23 20:31:40] Threads: 8
[2025-11-23 20:31:40] Checking for CVMFS
[2025-11-23 20:31:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:31:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:31:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:31:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:31:42] 2.13.2.0 5664 30237 195076 153228 1 57 38161604 39288832 7623 16776704 0 22028790 99.621 18695959 32236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 20:31:42] CVMFS is ok
[2025-11-23 20:31:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:31:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:31:42] Further information can be found at the LHC@home message board.
[2025-11-23 20:31:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:31:42] Checking for apptainer binary...
[2025-11-23 20:31:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:31:42] Running /usr/bin/apptainer --version
[2025-11-23 20:31:42] apptainer version 1.4.4-1.el9
[2025-11-23 20:31:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:31:43] c-210-30.aglt2.org
[2025-11-23 20:31:43] apptainer works
[2025-11-23 20:31:43] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:31:43] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:31:43] Starting ATLAS job with PandaID=6895329044
[2025-11-23 20:31:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:27:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:27:09] 2025-11-26 00:26:01,558 | INFO     | time since job start (168797s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:03,565 | INFO     | time since job start (168799s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:03,683 | INFO     | monitor loop #9965: job 0:6895329044 is in state 'finished'
[2025-11-25 19:27:09] 2025-11-26 00:26:03,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:27:09] 2025-11-26 00:26:05,572 | INFO     | time since job start (168801s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:06,188 | INFO     | monitor loop #9966: job 0:6895329044 is in state 'finished'
[2025-11-25 19:27:09] 2025-11-26 00:26:06,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:27:09] 2025-11-26 00:26:07,583 | INFO     | time since job start (168803s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:08,698 | INFO     | monitor loop #9967: job 0:6895329044 is in state 'finished'
[2025-11-25 19:27:09] 2025-11-26 00:26:08,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:27:09] 2025-11-26 00:26:09,590 | INFO     | time since job start (168805s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:11,205 | INFO     | monitor loop #9968: job 0:6895329044 is in state 'finished'
[2025-11-25 19:27:09] 2025-11-26 00:26:11,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:27:09] 2025-11-26 00:26:11,597 | INFO     | time since job start (168807s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:11,751 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 19:27:09] 2025-11-26 00:26:11,768 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8537499999998
[2025-11-25 19:27:09] 2025-11-26 00:26:11,784 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895329044/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:27:09] 2025-11-26 00:26:11,785 | INFO     | extracted standard info from prmon json
[2025-11-25 19:27:09] 2025-11-26 00:26:11,785 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:27:09] 2025-11-26 00:26:11,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:27:09] 2025-11-26 00:26:11,886 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:27:09] 2025-11-26 00:26:11,897 | INFO     | sum of square deviations: 6554945795725.819
[2025-11-25 19:27:09] 2025-11-26 00:26:12,127 | INFO     | sum of deviations: 13433013255299.885
[2025-11-25 19:27:09] 2025-11-26 00:26:12,128 | INFO     | mean x: 1764032382.3584087
[2025-11-25 19:27:09] 2025-11-26 00:26:12,128 | INFO     | mean y: 2953366.266546112
[2025-11-25 19:27:09] 2025-11-26 00:26:12,128 | INFO     | intersect: -3612068193.5532155
[2025-11-25 19:27:09] 2025-11-26 00:26:12,132 | INFO     | chi2: 18.485814903302682
[2025-11-25 19:27:09] 2025-11-26 00:26:12,137 | INFO     | sum of square deviations: 6519455571268.307
[2025-11-25 19:27:09] 2025-11-26 00:26:12,317 | INFO     | sum of deviations: 14406185271247.193
[2025-11-25 19:27:09] 2025-11-26 00:26:12,317 | INFO     | mean x: 1764032229.8699276
[2025-11-25 19:27:09] 2025-11-26 00:26:12,318 | INFO     | mean y: 2957547.368115942
[2025-11-25 19:27:09] 2025-11-26 00:26:12,318 | INFO     | intersect: -3895063514.3834577
[2025-11-25 19:27:09] 2025-11-26 00:26:12,322 | INFO     | chi2: 15.202729118471876
[2025-11-25 19:27:09] 2025-11-26 00:26:12,322 | INFO     | current chi2=15.202729118471876 (change=17.760027361543305 %)
[2025-11-25 19:27:09] 2025-11-26 00:26:12,322 | INFO     | right removable region: 2759
[2025-11-25 19:27:09] 2025-11-26 00:26:12,327 | INFO     | sum of square deviations: 6519445015535.057
[2025-11-25 19:27:09] 2025-11-26 00:26:12,522 | INFO     | sum of deviations: 12369292741328.271
[2025-11-25 19:27:09] 2025-11-26 00:26:12,522 | INFO     | mean x: 1764032534.8695652
[2025-11-25 19:27:09] 2025-11-26 00:26:12,522 | INFO     | mean y: 2957935.586956522
[2025-11-25 19:27:09] 2025-11-26 00:26:12,522 | INFO     | intersect: -3343927386.251785
[2025-11-25 19:27:09] 2025-11-26 00:26:12,526 | INFO     | chi2: 14.893684456660049
[2025-11-25 19:27:09] 2025-11-26 00:26:12,527 | INFO     | current chi2=14.893684456660049 (change=19.431820914753732 %)
[2025-11-25 19:27:09] 2025-11-26 00:26:12,527 | INFO     | left removable region: 10
[2025-11-25 19:27:09] 2025-11-26 00:26:12,531 | INFO     | sum of square deviations: 6441807516174.757
[2025-11-25 19:27:09] 2025-11-26 00:26:13,229 | INFO     | sum of deviations: 12768357896771.422
[2025-11-25 19:27:09] 2025-11-26 00:26:13,229 | INFO     | mean x: 1764032504.394689
[2025-11-25 19:27:09] 2025-11-26 00:26:13,229 | INFO     | mean y: 2966227.4798108405
[2025-11-25 19:27:09] 2025-11-26 00:26:13,229 | INFO     | intersect: -3493536625.344387
[2025-11-25 19:27:09] 2025-11-26 00:26:13,281 | INFO     | chi2: 9.258485664710285
[2025-11-25 19:27:09] 2025-11-26 00:26:13,304 | INFO     | current memory leak: 1.98 B/s (using 2749 data points, chi2=9.26)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,307 | INFO     | could have reported an average CPU frequency of 2599 MHz (95 samples)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,308 | INFO     | ..............................
[2025-11-25 19:27:09] 2025-11-26 00:26:13,308 | INFO     | . Timing measurements:
[2025-11-25 19:27:09] 2025-11-26 00:26:13,308 | INFO     | . get job = 1 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,312 | INFO     | . initial setup = 5 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | . payload setup = 35 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | . stage-in = 0 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | . payload execution = 168684 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | . stage-out = 8 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | . log creation = 4 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,313 | INFO     | ..............................
[2025-11-25 19:27:09] 2025-11-26 00:26:13,548 | INFO     | 
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | job summary report
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | --------------------------------------------------
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | PanDA job id: 6895329044
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | task id: 47556137
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | errors: (none)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | pilot state: finished 
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | transexitcode: 0
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | exeerrorcode: 0
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | exeerrordiag: 
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | exitcode: 0
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | exitmsg: OK
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | cpuconsumptiontime: 298111 s
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | nevents: 1000
[2025-11-25 19:27:09] 2025-11-26 00:26:13,550 | INFO     | neventsw: 0
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | pid: 691250
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | pgrp: 691250
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | corecount: 8
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | event service: False
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2299209, 168724: 2403190, 168733: 2412980, 168736: 2413036, 168762: 2413282}
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | --------------------------------------------------
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | 
[2025-11-25 19:27:09] 2025-11-26 00:26:13,551 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:27:09] 2025-11-26 00:26:13,606 | INFO     | time since job start (168809s) is within the limit (172800.0s)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:27:09] 2025-11-26 00:26:13,617 | INFO     | job 6895329044 has completed (purged errors)
[2025-11-25 19:27:09] 2025-11-26 00:26:13,618 | INFO     | overall cleanup function is called
[2025-11-25 19:27:09] 2025-11-26 00:26:14,651 | INFO     | --- collectZombieJob: --- 10, [691250]
[2025-11-25 19:27:09] 2025-11-26 00:26:14,652 | INFO     | zombie collector waiting for pid 691250
[2025-11-25 19:27:09] 2025-11-26 00:26:14,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:27:09] 2025-11-26 00:26:14,652 | INFO     | collected zombie processes
[2025-11-25 19:27:09] 2025-11-26 00:26:14,652 | INFO     | will attempt to kill all subprocesses of pid=691250
[2025-11-25 19:27:09] 2025-11-26 00:26:15,188 | INFO     | process IDs to be killed: [691250] (in reverse order)
[2025-11-25 19:27:09] 2025-11-26 00:26:15,436 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:27:09] 2025-11-26 00:26:15,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:27:09] 2025-11-26 00:26:15,450 | INFO     | did not find any defunct processes belonging to 691250
[2025-11-25 19:27:09] 2025-11-26 00:26:15,471 | INFO     | did not find any defunct processes belonging to 691250
[2025-11-25 19:27:09] 2025-11-26 00:26:15,476 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:27:09] 2025-11-26 00:26:15,477 | INFO     | ready for new job
[2025-11-25 19:27:09] 2025-11-26 00:26:15,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:27:09] 2025-11-26 00:26:15,493 | INFO     | ***************************************
[2025-11-25 19:27:09] 2025-11-26 00:26:15,494 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:27:09] 2025-11-26 00:26:15,494 | INFO     | ***************************************
[2025-11-25 19:27:09] 2025-11-26 00:26:15,494 | INFO     | 
[2025-11-25 19:27:09] 2025-11-26 00:26:15,500 | INFO     | architecture information:
[2025-11-25 19:27:09] 2025-11-26 00:26:15,501 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:27:09] 2025-11-26 00:26:15,554 | INFO     | cat /etc/os-release:
[2025-11-25 19:27:09] NAME="CentOS Linux"
[2025-11-25 19:27:09] VERSION="7 (Core)"
[2025-11-25 19:27:09] ID="centos"
[2025-11-25 19:27:09] ID_LIKE="rhel fedora"
[2025-11-25 19:27:09] VERSION_ID="7"
[2025-11-25 19:27:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:27:09] ANSI_COLOR="0;31"
[2025-11-25 19:27:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:27:09] HOME_URL="https://www.centos.org/"
[2025-11-25 19:27:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:27:09] 
[2025-11-25 19:27:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:27:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:27:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:27:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:27:09] 
[2025-11-25 19:27:09] 2025-11-26 00:26:15,555 | INFO     | ***************************************
[2025-11-25 19:27:09] 2025-11-26 00:26:16,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:27:09] 2025-11-26 00:26:16,141 | INFO     | sufficient remaining disk space (49399463936 B)
[2025-11-25 19:27:09] 2025-11-26 00:26:16,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:27:09] 2025-11-26 00:26:16,142 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:27:09] 2025-11-26 00:26:16,142 | INFO     | update_server=False
[2025-11-25 19:27:09] 2025-11-26 00:26:16,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:27:09] 2025-11-26 00:26:16,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:27:09] 2025-11-26 00:26:16,190 | INFO     | all data control threads have been joined
[2025-11-25 19:27:09] 2025-11-26 00:26:16,236 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:27:09] 2025-11-26 00:26:16,244 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:27:09] 2025-11-26 00:26:16,244 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:27:09] 2025-11-26 00:26:16,245 | INFO     | will abort loop
[2025-11-25 19:27:09] 2025-11-26 00:26:16,521 | INFO     | all job control threads have been joined
[2025-11-25 19:27:09] 2025-11-26 00:26:16,910 | INFO     | all payload control threads have been joined
[2025-11-25 19:27:09] 2025-11-26 00:26:17,149 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,196 | INFO     | [data] control thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,251 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,419 | INFO     | [job] validate thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,527 | INFO     | [job] control thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:27:09] 2025-11-26 00:26:17,561 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,615 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:17,916 | INFO     | [payload] control thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:18,113 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:18,213 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:18,218 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:18,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:18,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:27:09] 2025-11-26 00:26:19,565 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:19,571 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:20,155 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:27:09] 2025-11-26 00:26:47,461 | INFO     | PID=683988 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 19:27:09] 2025-11-26 00:26:47,461 | INFO     | .. there are 8 such processes running
[2025-11-25 19:27:09] 2025-11-26 00:26:47,462 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:27:09] 2025-11-26 00:26:47,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:27:09] 2025-11-26 00:26:47,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:27:09] 2025-11-26 00:27:01,301 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:27:09] 2025-11-26 00:27:02,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371887863616)>', '<ExcThread(monitor, started 140371224925952)>']
[2025-11-25 19:27:09] 2025-11-26 00:27:03,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:27:09] 2025-11-26 00:27:03,559 | INFO     | [monitor] control thread has ended
[2025-11-25 19:27:09] 2025-11-26 00:27:07,909 | INFO     | all workflow threads have been joined
[2025-11-25 19:27:09] 2025-11-26 00:27:07,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:27:09] 2025-11-26 00:27:07,910 | INFO     | traces error code: 0
[2025-11-25 19:27:09] 2025-11-26 00:27:07,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:27:09] 2025-11-26 00:27:08,145 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:27:09] 2025-11-26 00:27:08,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:27:09] 2025-11-26 00:27:08,180 [wrapper] pilotpid: 683988
[2025-11-25 19:27:09] 2025-11-26 00:27:08,235 [wrapper] Pilot exit status: 0
[2025-11-25 19:27:09] 2025-11-26 00:27:08,305 [wrapper] pandaids: 6895329044
[2025-11-25 19:27:09] 2025-11-26 00:27:08,527 [wrapper] cleanup supervisor_pilot 1680095 683989
[2025-11-25 19:27:09] 2025-11-26 00:27:08,555 [wrapper] Test setup, not cleaning
[2025-11-25 19:27:09] 2025-11-26 00:27:08,596 [wrapper] apfmon messages muted
[2025-11-25 19:27:09] 2025-11-26 00:27:08,625 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:27:09] 2025-11-26 00:27:08,646 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:27:09]  *** Error codes and diagnostics ***
[2025-11-25 19:27:09]     "exeErrorCode": 0,
[2025-11-25 19:27:09]     "exeErrorDiag": "",
[2025-11-25 19:27:09]     "pilotErrorCode": 0,
[2025-11-25 19:27:09]     "pilotErrorDiag": "",
[2025-11-25 19:27:09]  *** Listing of results directory ***
[2025-11-25 19:27:09] total 1348492
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:30 pilot3.tar.gz
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:36 queuedata.json
[2025-11-25 19:27:09] -rwx------. 1 boincer umatlas     36292 Nov 21 13:37 runpilot2-wrapper.sh
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:27:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:31 run_atlas
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:31 job.xml
[2025-11-25 19:27:09] -rw-r--r--. 2 boincer umatlas 409716072 Nov 23 20:31 EVNT.47483658._000103.pool.root.1
[2025-11-25 19:27:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:31 start_atlas.sh
[2025-11-25 19:27:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:31 shared
[2025-11-25 19:27:09] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 20:31 input.tar.gz
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:31 boinc_lockfile
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 20:31 pandaJob.out
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas        57 Nov 23 20:31 setup.sh.local
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas    989786 Nov 23 20:32 agis_schedconf.cvmfs.json
[2025-11-25 19:27:09] drwx------. 5 boincer umatlas      4096 Nov 23 20:32 pilot3
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas       534 Nov 25 18:56 boinc_task_state.xml
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas      6663 Nov 25 19:20 init_data.xml
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas 918207790 Nov 25 19:23 HITS.47556137._001024.pool.root.1
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas      1070 Nov 25 19:25 memory_monitor_summary.json
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:25 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas   3414145 Nov 25 19:25 log.47556137._001024.job.log.tgz.1
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas      8648 Nov 25 19:26 heartbeat.json
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas        95 Nov 25 19:26 pilot_heartbeat.json
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas        30 Nov 25 19:27 wrapper_checkpoint.txt
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:27 boinc_mmap_file
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas      5008 Nov 25 19:27 pilotlog.txt
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas  21093461 Nov 25 19:27 log.47556137._001024.job.log.1
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas       353 Nov 25 19:27 output.list
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:27 runtime_log
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas  24524800 Nov 25 19:27 result.tar.gz
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 19:27 runtime_log.err
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas       667 Nov 25 19:27 GatNDmtBlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWdJKDmfSt1Do.diag
[2025-11-25 19:27:09] -rw-r--r--. 1 boincer umatlas     21758 Nov 25 19:27 stderr.txt
[2025-11-25 19:27:09] HITS file was successfully produced:
[2025-11-25 19:27:09] -rw-------. 1 boincer umatlas 918207790 Nov 25 19:23 shared/HITS.pool.root.1
[2025-11-25 19:27:10]  *** Contents of shared directory: ***
[2025-11-25 19:27:10] total 1321360
[2025-11-25 19:27:10] -rw-r--r--. 2 boincer umatlas 409716072 Nov 23 20:31 ATLAS.root_0
[2025-11-25 19:27:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:31 start_atlas.sh
[2025-11-25 19:27:10] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 20:31 input.tar.gz
[2025-11-25 19:27:10] -rw-------. 1 boincer umatlas 918207790 Nov 25 19:23 HITS.pool.root.1
[2025-11-25 19:27:10] -rw-------. 1 boincer umatlas  24524800 Nov 25 19:27 result.tar.gz
19:27:11 (676691): run_atlas exited; CPU time 300909.060088
19:27:11 (676691): called boinc_finish(0)

</stderr_txt>
]]>

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