Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:35 (3958080): wrapper (7.7.26015): starting
00:01:35 (3958080): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:35] Arguments: --nthreads 9
[2025-11-23 00:01:35] Threads: 9
[2025-11-23 00:01:35] Checking for CVMFS
[2025-11-23 00:01:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:01:38] 2.13.3.0 11066 25285 338452 153197 3 363 30721305 32935936 17211 16776704 0 70638948 99.440 97198728 38203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:01:38] CVMFS is ok
[2025-11-23 00:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:01:38] Further information can be found at the LHC@home message board.
[2025-11-23 00:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:01:38] Checking for apptainer binary...
[2025-11-23 00:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:01:38] Running /usr/bin/apptainer --version
[2025-11-23 00:01:39] apptainer version 1.4.4-1.el9
[2025-11-23 00:01:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:01:39] c6-1-24-4.aglt2.org
[2025-11-23 00:01:39] apptainer works
[2025-11-23 00:01:39] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:01:39] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:01:40] Starting ATLAS job with PandaID=6895336844
[2025-11-23 00:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 17:30:00]  *** The last 200 lines of the pilot log: ***
[2025-11-24 17:30:00] 2025-11-24 22:29:14,942 | INFO     | monitor loop #8179: job 0:6895336844 is in state 'finished'
[2025-11-24 17:30:00] 2025-11-24 22:29:14,942 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:30:00] 2025-11-24 22:29:15,707 | INFO     | PID=3971414 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:30:00] 2025-11-24 22:29:15,707 | INFO     | .. there are 28 such processes running
[2025-11-24 17:30:00] 2025-11-24 22:29:16,707 | INFO     | time since job start (149173s) is within the limit (172800.0s)
[2025-11-24 17:30:00] 2025-11-24 22:29:17,447 | INFO     | monitor loop #8180: job 0:6895336844 is in state 'finished'
[2025-11-24 17:30:00] 2025-11-24 22:29:17,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:30:00] 2025-11-24 22:29:18,719 | INFO     | time since job start (149175s) is within the limit (172800.0s)
[2025-11-24 17:30:00] 2025-11-24 22:29:19,958 | INFO     | monitor loop #8181: job 0:6895336844 is in state 'finished'
[2025-11-24 17:30:00] 2025-11-24 22:29:19,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:30:00] 2025-11-24 22:29:20,736 | INFO     | time since job start (149177s) is within the limit (172800.0s)
[2025-11-24 17:30:00] 2025-11-24 22:29:22,463 | INFO     | monitor loop #8182: job 0:6895336844 is in state 'finished'
[2025-11-24 17:30:00] 2025-11-24 22:29:22,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:30:00] 2025-11-24 22:29:22,743 | INFO     | time since job start (149179s) is within the limit (172800.0s)
[2025-11-24 17:30:00] 2025-11-24 22:29:23,568 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 17:30:00] 2025-11-24 22:29:23,576 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2916.8196607142854
[2025-11-24 17:30:00] 2025-11-24 22:29:23,596 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895336844/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 17:30:00] 2025-11-24 22:29:23,598 | INFO     | extracted standard info from prmon json
[2025-11-24 17:30:00] 2025-11-24 22:29:23,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 17:30:00] 2025-11-24 22:29:23,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 17:30:00] 2025-11-24 22:29:23,638 | INFO     | fitting pss+swap vs Time
[2025-11-24 17:30:00] 2025-11-24 22:29:23,643 | INFO     | sum of square deviations: 4515407508976.342
[2025-11-24 17:30:00] 2025-11-24 22:29:24,267 | INFO     | sum of deviations: 16200456443956.61
[2025-11-24 17:30:00] 2025-11-24 22:29:24,267 | INFO     | mean x: 1763948828.185094
[2025-11-24 17:30:00] 2025-11-24 22:29:24,267 | INFO     | mean y: 3056379.089271089
[2025-11-24 17:30:00] 2025-11-24 22:29:24,267 | INFO     | intersect: -6325669456.524039
[2025-11-24 17:30:00] 2025-11-24 22:29:24,270 | INFO     | chi2: 21.227695972121268
[2025-11-24 17:30:00] 2025-11-24 22:29:24,273 | INFO     | sum of square deviations: 4487730656118.863
[2025-11-24 17:30:00] 2025-11-24 22:29:24,377 | INFO     | sum of deviations: 17076514137654.201
[2025-11-24 17:30:00] 2025-11-24 22:29:24,378 | INFO     | mean x: 1763948675.6947067
[2025-11-24 17:30:00] 2025-11-24 22:29:24,378 | INFO     | mean y: 3061205.489536315
[2025-11-24 17:30:00] 2025-11-24 22:29:24,378 | INFO     | intersect: -6709038251.176083
[2025-11-24 17:30:00] 2025-11-24 22:29:24,380 | INFO     | chi2: 18.00356225895189
[2025-11-24 17:30:00] 2025-11-24 22:29:24,380 | INFO     | current chi2=18.00356225895189 (change=15.18833564134182 %)
[2025-11-24 17:30:00] 2025-11-24 22:29:24,381 | INFO     | right removable region: 2436
[2025-11-24 17:30:00] 2025-11-24 22:29:24,383 | INFO     | sum of square deviations: 4487723825835.247
[2025-11-24 17:30:00] 2025-11-24 22:29:24,695 | INFO     | sum of deviations: 15156870232264.158
[2025-11-24 17:30:00] 2025-11-24 22:29:24,696 | INFO     | mean x: 1763948980.6942964
[2025-11-24 17:30:00] 2025-11-24 22:29:24,696 | INFO     | mean y: 3062127.7599507594
[2025-11-24 17:30:00] 2025-11-24 22:29:24,696 | INFO     | intersect: -5954511652.2491255
[2025-11-24 17:30:00] 2025-11-24 22:29:24,699 | INFO     | chi2: 17.059870125664442
[2025-11-24 17:30:00] 2025-11-24 22:29:24,699 | INFO     | current chi2=17.059870125664442 (change=19.63390587433751 %)
[2025-11-24 17:30:00] 2025-11-24 22:29:24,699 | INFO     | left removable region: 10
[2025-11-24 17:30:00] 2025-11-24 22:29:24,702 | INFO     | sum of square deviations: 4427226586715.683
[2025-11-24 17:30:00] 2025-11-24 22:29:24,825 | INFO     | time since job start (149181s) is within the limit (172800.0s)
[2025-11-24 17:30:00] 2025-11-24 22:29:25,044 | INFO     | monitor loop #8183: job 0:6895336844 is in state 'finished'
[2025-11-24 17:30:00] 2025-11-24 22:29:25,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:30:00] 2025-11-24 22:29:25,630 | INFO     | sum of deviations: 15299193170904.744
[2025-11-24 17:30:00] 2025-11-24 22:29:25,630 | INFO     | mean x: 1763948950.215169
[2025-11-24 17:30:00] 2025-11-24 22:29:25,630 | INFO     | mean y: 3073190.4736191262
[2025-11-24 17:30:00] 2025-11-24 22:29:25,630 | INFO     | intersect: -6092615657.69457
[2025-11-24 17:30:00] 2025-11-24 22:29:25,655 | INFO     | chi2: 9.869410685334525
[2025-11-24 17:30:00] 2025-11-24 22:29:25,655 | INFO     | current memory leak: 3.46 B/s (using 2426 data points, chi2=9.87)
[2025-11-24 17:30:00] 2025-11-24 22:29:25,658 | INFO     | could have reported an average CPU frequency of 2890 MHz (84 samples)
[2025-11-24 17:30:00] 2025-11-24 22:29:25,676 | INFO     | ..............................
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . Timing measurements:
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . get job = 0 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . initial setup = 10 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . payload setup = 59 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . stage-in = 0 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . payload execution = 148987 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . stage-out = 7 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | . log creation = 2 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,677 | INFO     | ..............................
[2025-11-24 17:30:00] 2025-11-24 22:29:25,926 | INFO     | 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | job summary report
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | --------------------------------------------------
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | PanDA job id: 6895336844
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | task id: 47556137
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | errors: (none)
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | pilot state: finished 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | transexitcode: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | exeerrorcode: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | exeerrordiag: 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | exitcode: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | exitmsg: OK
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | cpuconsumptiontime: 236744 s
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | nevents: 1000
[2025-11-24 17:30:00] 2025-11-24 22:29:25,927 | INFO     | neventsw: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | pid: 4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | pgrp: 4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | corecount: 9
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | event service: False
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | sizes: {0: 2298585, 1: 2298613, 2: 2298812, 3: 2298812, 14: 2298840, 25: 2298868, 37: 2299024, 41: 2299314, 47: 2299342, 149052: 2390588, 149060: 2400373, 149063: 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | --------------------------------------------------
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | 
[2025-11-24 17:30:00] 2025-11-24 22:29:25,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 17:30:00] 2025-11-24 22:29:26,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,051 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 17:30:00] 2025-11-24 22:29:26,052 | INFO     | job 6895336844 has completed (purged errors)
[2025-11-24 17:30:00] 2025-11-24 22:29:26,052 | INFO     | overall cleanup function is called
[2025-11-24 17:30:00] 2025-11-24 22:29:27,126 | INFO     | --- collectZombieJob: --- 10, [4011367]
[2025-11-24 17:30:00] 2025-11-24 22:29:27,131 | INFO     | zombie collector waiting for pid 4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:27,131 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 17:30:00] 2025-11-24 22:29:27,132 | INFO     | collected zombie processes
[2025-11-24 17:30:00] 2025-11-24 22:29:27,132 | INFO     | will attempt to kill all subprocesses of pid=4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:29,603 | INFO     | process IDs to be killed: [4011367] (in reverse order)
[2025-11-24 17:30:00] 2025-11-24 22:29:29,876 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 17:30:00] 2025-11-24 22:29:29,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 17:30:00] 2025-11-24 22:29:30,024 | INFO     | did not find any defunct processes belonging to 4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:30,085 | INFO     | did not find any defunct processes belonging to 4011367
[2025-11-24 17:30:00] 2025-11-24 22:29:30,088 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 17:30:00] 2025-11-24 22:29:30,092 | INFO     | ready for new job
[2025-11-24 17:30:00] 2025-11-24 22:29:30,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 17:30:00] 2025-11-24 22:29:30,164 | INFO     | ***************************************
[2025-11-24 17:30:00] 2025-11-24 22:29:30,164 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 17:30:00] 2025-11-24 22:29:30,168 | INFO     | ***************************************
[2025-11-24 17:30:00] 2025-11-24 22:29:30,169 | INFO     | 
[2025-11-24 17:30:00] 2025-11-24 22:29:30,172 | INFO     | architecture information:
[2025-11-24 17:30:00] 2025-11-24 22:29:30,177 | INFO     | executing command: cat /etc/os-release
[2025-11-24 17:30:00] 2025-11-24 22:29:30,217 | INFO     | cat /etc/os-release:
[2025-11-24 17:30:00] NAME="CentOS Linux"
[2025-11-24 17:30:00] VERSION="7 (Core)"
[2025-11-24 17:30:00] ID="centos"
[2025-11-24 17:30:00] ID_LIKE="rhel fedora"
[2025-11-24 17:30:00] VERSION_ID="7"
[2025-11-24 17:30:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 17:30:00] ANSI_COLOR="0;31"
[2025-11-24 17:30:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 17:30:00] HOME_URL="https://www.centos.org/"
[2025-11-24 17:30:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 17:30:00] 
[2025-11-24 17:30:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 17:30:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 17:30:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 17:30:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 17:30:00] 
[2025-11-24 17:30:00] 2025-11-24 22:29:30,218 | INFO     | ***************************************
[2025-11-24 17:30:00] 2025-11-24 22:29:30,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 17:30:00] 2025-11-24 22:29:30,829 | INFO     | sufficient remaining disk space (70058508288 B)
[2025-11-24 17:30:00] 2025-11-24 22:29:30,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 17:30:00] 2025-11-24 22:29:30,830 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 17:30:00] 2025-11-24 22:29:30,830 | INFO     | update_server=False
[2025-11-24 17:30:00] 2025-11-24 22:29:30,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 17:30:00] 2025-11-24 22:29:30,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 17:30:00] 2025-11-24 22:29:30,859 | INFO     | all job control threads have been joined
[2025-11-24 17:30:00] 2025-11-24 22:29:31,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:30:00] 2025-11-24 22:29:31,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:30:00] 2025-11-24 22:29:31,183 | INFO     | aborting loop
[2025-11-24 17:30:00] 2025-11-24 22:29:31,539 | INFO     | all data control threads have been joined
[2025-11-24 17:30:00] 2025-11-24 22:29:31,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 17:30:00] 2025-11-24 22:29:31,726 | INFO     | all payload control threads have been joined
[2025-11-24 17:30:00] 2025-11-24 22:29:31,838 | INFO     | [job] retrieve thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:31,865 | INFO     | [job] control thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,061 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,071 | INFO     | [job] queue monitor thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,105 | INFO     | [payload] failed_post thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,188 | INFO     | [job] job monitor thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,519 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,545 | INFO     | [data] control thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,580 | INFO     | [job] validate thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,732 | INFO     | [payload] control thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,841 | INFO     | [data] copytool_out thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,905 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:32,954 | INFO     | [data] copytool_in thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:33,160 | INFO     | [payload] validate_post thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:35,585 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 17:30:00] 2025-11-24 22:29:50,723 | INFO     | [monitor] cgroup control has ended
[2025-11-24 17:30:00] 2025-11-24 22:29:52,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220984551232)>', '<ExcThread(monitor, started 140220414555904)>']
[2025-11-24 17:30:00] 2025-11-24 22:29:57,162 | INFO     | all workflow threads have been joined
[2025-11-24 17:30:00] 2025-11-24 22:29:57,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 17:30:00] 2025-11-24 22:29:57,163 | INFO     | traces error code: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:57,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 17:30:00] 2025-11-24 22:29:58,805 | INFO     | PID=3971414 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:30:00] 2025-11-24 22:29:58,805 | INFO     | .. there are 28 such processes running
[2025-11-24 17:30:00] 2025-11-24 22:29:58,805 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 17:30:00] 2025-11-24 22:29:58,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 17:30:00] 2025-11-24 22:29:58,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 17:30:00] 2025-11-24 22:29:58,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 17:30:00] 2025-11-24 22:29:58,806 | INFO     | [monitor] control thread has ended
[2025-11-24 17:30:00] 2025-11-24 22:29:59,370 [wrapper] ==== pilot stdout END ====
[2025-11-24 17:30:00] 2025-11-24 22:29:59,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 17:30:00] 2025-11-24 22:29:59,406 [wrapper] pilotpid: 3971414
[2025-11-24 17:30:00] 2025-11-24 22:29:59,430 [wrapper] Pilot exit status: 0
[2025-11-24 17:30:00] 2025-11-24 22:29:59,502 [wrapper] pandaids: 6895336844
[2025-11-24 17:30:00] 2025-11-24 22:29:59,861 [wrapper] cleanup supervisor_pilot 2615320 3971415
[2025-11-24 17:30:00] 2025-11-24 22:29:59,882 [wrapper] Test setup, not cleaning
[2025-11-24 17:30:00] 2025-11-24 22:29:59,938 [wrapper] apfmon messages muted
[2025-11-24 17:30:00] 2025-11-24 22:29:59,982 [wrapper] ==== wrapper stdout END ====
[2025-11-24 17:30:00] 2025-11-24 22:30:00,028 [wrapper] ==== wrapper stderr END ====
[2025-11-24 17:30:00]  *** Error codes and diagnostics ***
[2025-11-24 17:30:00]     "exeErrorCode": 0,
[2025-11-24 17:30:00]     "exeErrorDiag": "",
[2025-11-24 17:30:00]     "pilotErrorCode": 0,
[2025-11-24 17:30:00]     "pilotErrorDiag": "",
[2025-11-24 17:30:00]  *** Listing of results directory ***
[2025-11-24 17:30:00] total 1340824
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:46 pilot3.tar.gz
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:46 queuedata.json
[2025-11-24 17:30:00] -rwx------. 1 boincer umatlas     36292 Nov 22 00:47 runpilot2-wrapper.sh
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 17:30:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas 410594702 Nov 23 00:01 EVNT.47483658._000286.pool.root.1
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:01 input.tar.gz
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 17:30:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:01 pandaJob.out
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas        57 Nov 23 00:01 setup.sh.local
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas    989784 Nov 23 00:02 agis_schedconf.cvmfs.json
[2025-11-24 17:30:00] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:00 boinc_task_state.xml
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 17:22 init_data.xml
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas 916257109 Nov 24 17:27 HITS.47556137._002824.pool.root.1
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas      1064 Nov 24 17:28 memory_monitor_summary.json
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:28 agis_ddmendpoints.agis.ALL.json
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas   3245105 Nov 24 17:28 log.47556137._002824.job.log.tgz.1
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas        95 Nov 24 17:29 pilot_heartbeat.json
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas      8629 Nov 24 17:29 heartbeat.json
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 17:29 boinc_mmap_file
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas        29 Nov 24 17:29 wrapper_checkpoint.txt
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas       823 Nov 24 17:29 pilotlog.txt
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas  17875318 Nov 24 17:30 log.47556137._002824.job.log.1
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas       353 Nov 24 17:30 output.list
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas       620 Nov 24 17:30 runtime_log
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas  21135360 Nov 24 17:30 result.tar.gz
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 17:30 runtime_log.err
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas       666 Nov 24 17:30 65JODmZevg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtzHKDmezmDnn.diag
[2025-11-24 17:30:00] -rw-r--r--. 1 boincer umatlas     21900 Nov 24 17:30 stderr.txt
[2025-11-24 17:30:00] HITS file was successfully produced:
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas 916257109 Nov 24 17:27 shared/HITS.pool.root.1
[2025-11-24 17:30:00]  *** Contents of shared directory: ***
[2025-11-24 17:30:00] total 1317000
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas 410594702 Nov 23 00:01 ATLAS.root_0
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:01 input.tar.gz
[2025-11-24 17:30:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas 916257109 Nov 24 17:27 HITS.pool.root.1
[2025-11-24 17:30:00] -rw-------. 1 boincer umatlas  21135360 Nov 24 17:30 result.tar.gz
17:30:02 (3958080): run_atlas exited; CPU time 239720.692672
17:30:02 (3958080): called boinc_finish(0)

</stderr_txt>
]]>

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