Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:03 (2622988): wrapper (7.7.26015): starting
00:01:03 (2622988): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:01:03] Arguments: --nthreads 8
[2025-11-23 00:01:03] Threads: 8
[2025-11-23 00:01:03] Checking for CVMFS
[2025-11-23 00:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:01:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:01:06] 2.13.3.0 11379 25283 336372 153197 2 602 20118909 32935937 30209 16776704 0 85050656 99.409 123710007 38662 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:01:06] CVMFS is ok
[2025-11-23 00:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:01:06] Further information can be found at the LHC@home message board.
[2025-11-23 00:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:01:06] Checking for apptainer binary...
[2025-11-23 00:01:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:01:06] Running /usr/bin/apptainer --version
[2025-11-23 00:01:06] apptainer version 1.4.4-1.el9
[2025-11-23 00:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:01:06] c6-4-5-1.aglt2.org
[2025-11-23 00:01:06] apptainer works
[2025-11-23 00:01:06] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:01:06] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:01:06] Starting ATLAS job with PandaID=6894285631
[2025-11-23 00:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:01:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:01:50] 2025-11-24 10:00:41,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:01:50] 2025-11-24 10:00:42,208 | INFO     | time since job start (104326s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:44,235 | INFO     | monitor loop #5895: job 0:6894285631 is in state 'finished'
[2025-11-24 05:01:50] 2025-11-24 10:00:44,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:01:50] 2025-11-24 10:00:44,237 | INFO     | time since job start (104328s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:46,248 | INFO     | time since job start (104330s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:46,760 | INFO     | monitor loop #5896: job 0:6894285631 is in state 'finished'
[2025-11-24 05:01:50] 2025-11-24 10:00:46,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:01:50] 2025-11-24 10:00:48,271 | INFO     | time since job start (104332s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:49,330 | INFO     | monitor loop #5897: job 0:6894285631 is in state 'finished'
[2025-11-24 05:01:50] 2025-11-24 10:00:49,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:01:50] 2025-11-24 10:00:50,278 | INFO     | time since job start (104334s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:51,867 | INFO     | monitor loop #5898: job 0:6894285631 is in state 'finished'
[2025-11-24 05:01:50] 2025-11-24 10:00:51,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:01:50] 2025-11-24 10:00:52,870 | INFO     | PID=2635823 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:01:50] 2025-11-24 10:00:52,870 | INFO     | .. there are 41 such processes running
[2025-11-24 05:01:50] 2025-11-24 10:00:53,309 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 05:01:50] 2025-11-24 10:00:53,313 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2921.3125468749995
[2025-11-24 05:01:50] 2025-11-24 10:00:53,326 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894285631/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:01:50] 2025-11-24 10:00:53,327 | INFO     | extracted standard info from prmon json
[2025-11-24 05:01:50] 2025-11-24 10:00:53,327 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:01:50] 2025-11-24 10:00:53,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:01:50] 2025-11-24 10:00:53,358 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:01:50] 2025-11-24 10:00:53,397 | INFO     | sum of square deviations: 1544996973500.1667
[2025-11-24 05:01:50] 2025-11-24 10:00:53,877 | INFO     | sum of deviations: 7371551739856.367
[2025-11-24 05:01:50] 2025-11-24 10:00:53,881 | INFO     | mean x: 1763926319.6855972
[2025-11-24 05:01:50] 2025-11-24 10:00:53,881 | INFO     | mean y: 2894790.7101873537
[2025-11-24 05:01:50] 2025-11-24 10:00:53,881 | INFO     | intersect: -8413221456.688662
[2025-11-24 05:01:50] 2025-11-24 10:00:53,884 | INFO     | chi2: 15.767764694631357
[2025-11-24 05:01:50] 2025-11-24 10:00:53,877 | INFO     | time since job start (104337s) is within the limit (172800.0s)
[2025-11-24 05:01:50] 2025-11-24 10:00:53,891 | INFO     | sum of square deviations: 1531469289178.6685
[2025-11-24 05:01:50] 2025-11-24 10:00:54,031 | INFO     | sum of deviations: 7927853691479.154
[2025-11-24 05:01:50] 2025-11-24 10:00:54,032 | INFO     | mean x: 1763926167.1943629
[2025-11-24 05:01:50] 2025-11-24 10:00:54,032 | INFO     | mean y: 2901060.766881973
[2025-11-24 05:01:50] 2025-11-24 10:00:54,032 | INFO     | intersect: -9128296459.7451
[2025-11-24 05:01:50] 2025-11-24 10:00:54,038 | INFO     | chi2: 12.735984166498765
[2025-11-24 05:01:50] 2025-11-24 10:00:54,038 | INFO     | current chi2=12.735984166498765 (change=19.227712912058223 %)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,038 | INFO     | right removable region: 1702
[2025-11-24 05:01:50] 2025-11-24 10:00:54,046 | INFO     | sum of square deviations: 1531466074229.278
[2025-11-24 05:01:50] 2025-11-24 10:00:54,179 | INFO     | sum of deviations: 6714249700953.453
[2025-11-24 05:01:50] 2025-11-24 10:00:54,184 | INFO     | mean x: 1763926472.19495
[2025-11-24 05:01:50] 2025-11-24 10:00:54,184 | INFO     | mean y: 2902198.5408103345
[2025-11-24 05:01:50] 2025-11-24 10:00:54,184 | INFO     | intersect: -7730499793.011059
[2025-11-24 05:01:50] 2025-11-24 10:00:54,187 | INFO     | chi2: 12.043270332387909
[2025-11-24 05:01:50] 2025-11-24 10:00:54,190 | INFO     | current chi2=12.043270332387909 (change=23.620940788846067 %)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,190 | INFO     | left removable region: 10
[2025-11-24 05:01:50] 2025-11-24 10:00:54,193 | INFO     | sum of square deviations: 1501980469656.6938
[2025-11-24 05:01:50] 2025-11-24 10:00:54,323 | INFO     | sum of deviations: 6888453707061.592
[2025-11-24 05:01:50] 2025-11-24 10:00:54,328 | INFO     | mean x: 1763926441.71513
[2025-11-24 05:01:50] 2025-11-24 10:00:54,328 | INFO     | mean y: 2915262.692080378
[2025-11-24 05:01:50] 2025-11-24 10:00:54,328 | INFO     | intersect: -8086887422.421281
[2025-11-24 05:01:50] 2025-11-24 10:00:54,331 | INFO     | chi2: 6.55170248964805
[2025-11-24 05:01:50] 2025-11-24 10:00:54,331 | INFO     | current memory leak: 4.59 B/s (using 1692 data points, chi2=6.55)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,338 | INFO     | could have reported an average CPU frequency of 2971 MHz (60 samples)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,338 | INFO     | ..............................
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . Timing measurements:
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . get job = 0 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . initial setup = 3 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . payload setup = 45 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . stage-in = 0 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . payload execution = 104171 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . stage-out = 22 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | . log creation = 5 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,339 | INFO     | ..............................
[2025-11-24 05:01:50] 2025-11-24 10:00:54,579 | INFO     | 
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | job summary report
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | --------------------------------------------------
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | PanDA job id: 6894285631
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | task id: 47533967
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | errors: (none)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | pilot state: finished 
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | transexitcode: 0
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | exeerrorcode: 0
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | exeerrordiag: 
[2025-11-24 05:01:50] 2025-11-24 10:00:54,630 | INFO     | exitcode: 0
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | exitmsg: OK
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | cpuconsumptiontime: 236990 s
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | nevents: 1000
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | neventsw: 0
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | pid: 2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | pgrp: 2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | corecount: 8
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | event service: False
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 23: 2298862, 28: 2299152, 34: 2299180, 104222: 2370673, 104245: 2379695, 104248: 2379751, 104281: 2379997}
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | --------------------------------------------------
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | 
[2025-11-24 05:01:50] 2025-11-24 10:00:54,631 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 05:01:50] 2025-11-24 10:00:54,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,773 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:01:50] 2025-11-24 10:00:54,773 | INFO     | job 6894285631 has completed (purged errors)
[2025-11-24 05:01:50] 2025-11-24 10:00:54,773 | INFO     | overall cleanup function is called
[2025-11-24 05:01:50] 2025-11-24 10:00:56,002 | INFO     | --- collectZombieJob: --- 10, [2668391]
[2025-11-24 05:01:50] 2025-11-24 10:00:56,003 | INFO     | zombie collector waiting for pid 2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:56,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:01:50] 2025-11-24 10:00:56,003 | INFO     | collected zombie processes
[2025-11-24 05:01:50] 2025-11-24 10:00:56,003 | INFO     | will attempt to kill all subprocesses of pid=2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:57,379 | INFO     | process IDs to be killed: [2668391] (in reverse order)
[2025-11-24 05:01:50] 2025-11-24 10:00:57,597 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:01:50] 2025-11-24 10:00:57,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:01:50] 2025-11-24 10:00:57,712 | INFO     | did not find any defunct processes belonging to 2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:57,727 | INFO     | did not find any defunct processes belonging to 2668391
[2025-11-24 05:01:50] 2025-11-24 10:00:57,729 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:01:50] 2025-11-24 10:00:57,729 | INFO     | ready for new job
[2025-11-24 05:01:50] 2025-11-24 10:00:57,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:01:50] 2025-11-24 10:00:57,747 | INFO     | ***************************************
[2025-11-24 05:01:50] 2025-11-24 10:00:57,748 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:01:50] 2025-11-24 10:00:57,748 | INFO     | ***************************************
[2025-11-24 05:01:50] 2025-11-24 10:00:57,748 | INFO     | 
[2025-11-24 05:01:50] 2025-11-24 10:00:57,759 | INFO     | architecture information:
[2025-11-24 05:01:50] 2025-11-24 10:00:57,763 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:01:50] 2025-11-24 10:00:57,803 | INFO     | cat /etc/os-release:
[2025-11-24 05:01:50] NAME="CentOS Linux"
[2025-11-24 05:01:50] VERSION="7 (Core)"
[2025-11-24 05:01:50] ID="centos"
[2025-11-24 05:01:50] ID_LIKE="rhel fedora"
[2025-11-24 05:01:50] VERSION_ID="7"
[2025-11-24 05:01:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:01:50] ANSI_COLOR="0;31"
[2025-11-24 05:01:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:01:50] HOME_URL="https://www.centos.org/"
[2025-11-24 05:01:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:01:50] 
[2025-11-24 05:01:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:01:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:01:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:01:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:01:50] 
[2025-11-24 05:01:50] 2025-11-24 10:00:57,803 | INFO     | ***************************************
[2025-11-24 05:01:50] 2025-11-24 10:00:58,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 05:01:50] 2025-11-24 10:00:58,366 | INFO     | sufficient remaining disk space (68099768320 B)
[2025-11-24 05:01:50] 2025-11-24 10:00:58,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:01:50] 2025-11-24 10:00:58,366 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:01:50] 2025-11-24 10:00:58,366 | INFO     | update_server=False
[2025-11-24 05:01:50] 2025-11-24 10:00:58,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:01:50] 2025-11-24 10:00:58,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:01:50] 2025-11-24 10:00:58,367 | INFO     | aborting loop
[2025-11-24 05:01:50] 2025-11-24 10:00:58,461 | INFO     | all data control threads have been joined
[2025-11-24 05:01:50] 2025-11-24 10:00:58,791 | INFO     | all job control threads have been joined
[2025-11-24 05:01:50] 2025-11-24 10:00:58,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:01:50] 2025-11-24 10:00:59,373 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,384 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,407 | INFO     | all payload control threads have been joined
[2025-11-24 05:01:50] 2025-11-24 10:00:59,411 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,416 | INFO     | [job] validate thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,470 | INFO     | [data] control thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:01:50] 2025-11-24 10:00:59,792 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:01:50] 2025-11-24 10:00:59,798 | INFO     | [job] control thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:00:59,947 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,114 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,413 | INFO     | [payload] control thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,615 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,629 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,878 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:00,886 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:01,799 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:02,873 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:01:50] 2025-11-24 10:01:13,602 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:01:50] 2025-11-24 10:01:13,794 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620381235008)>', '<ExcThread(monitor, started 140619896837888)>']
[2025-11-24 05:01:50] 2025-11-24 10:01:18,821 | INFO     | all workflow threads have been joined
[2025-11-24 05:01:50] 2025-11-24 10:01:18,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:01:50] 2025-11-24 10:01:18,823 | INFO     | traces error code: 0
[2025-11-24 05:01:50] 2025-11-24 10:01:18,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:01:50] 2025-11-24 10:01:29,696 | INFO     | PID=2635823 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | INFO     | .. there are 41 such processes running
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:01:50] 2025-11-24 10:01:29,697 | INFO     | [monitor] control thread has ended
[2025-11-24 05:01:50] 2025-11-24 10:01:31,846 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:01:50] 2025-11-24 10:01:31,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:01:50] 2025-11-24 10:01:31,905 [wrapper] pilotpid: 2635823
[2025-11-24 05:01:50] 2025-11-24 10:01:31,960 [wrapper] Pilot exit status: 0
[2025-11-24 05:01:50] 2025-11-24 10:01:32,147 [wrapper] pandaids: 6894285631
[2025-11-24 05:01:50] 2025-11-24 10:01:32,330 [wrapper] cleanup supervisor_pilot 1047027 2635824
[2025-11-24 05:01:50] 2025-11-24 10:01:32,344 [wrapper] Test setup, not cleaning
[2025-11-24 05:01:50] 2025-11-24 10:01:32,366 [wrapper] apfmon messages muted
[2025-11-24 05:01:50] 2025-11-24 10:01:32,429 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:01:50] 2025-11-24 10:01:32,501 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:01:50]  *** Error codes and diagnostics ***
[2025-11-24 05:01:50]     "exeErrorCode": 0,
[2025-11-24 05:01:50]     "exeErrorDiag": "",
[2025-11-24 05:01:50]     "pilotErrorCode": 0,
[2025-11-24 05:01:50]     "pilotErrorDiag": "",
[2025-11-24 05:01:50]  *** Listing of results directory ***
[2025-11-24 05:01:50] total 1343556
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 05:17 queuedata.json
[2025-11-24 05:01:50] -rwx------. 1 boincer umatlas     36292 Nov 21 05:18 runpilot2-wrapper.sh
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:18 pilot3.tar.gz
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:01:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas 412050132 Nov 23 00:01 EVNT.47493127._002364.pool.root.1
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 05:01:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:01 input.tar.gz
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:01 pandaJob.out
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas        57 Nov 23 00:01 setup.sh.local
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas    989784 Nov 23 00:01 agis_schedconf.cvmfs.json
[2025-11-24 05:01:50] drwx------. 5 boincer umatlas      4096 Nov 23 00:01 pilot3
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas       533 Nov 24 04:34 boinc_task_state.xml
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas 929101936 Nov 24 04:58 HITS.47533967._003354.pool.root.1
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas      1070 Nov 24 04:59 memory_monitor_summary.json
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas   1526164 Nov 24 05:00 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas      6877 Nov 24 05:00 init_data.xml
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas   2637467 Nov 24 05:00 log.47533967._003354.job.log.tgz.1
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas        95 Nov 24 05:00 pilot_heartbeat.json
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas      8653 Nov 24 05:00 heartbeat.json
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas       823 Nov 24 05:01 pilotlog.txt
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas  12727076 Nov 24 05:01 log.47533967._003354.job.log.1
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas       353 Nov 24 05:01 output.list
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas       620 Nov 24 05:01 runtime_log
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas  15380480 Nov 24 05:01 result.tar.gz
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 05:01 runtime_log.err
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas       668 Nov 24 05:01 A2LNDmyOdg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOHJKDmHamfsn.diag
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 05:01 boinc_mmap_file
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas     21890 Nov 24 05:01 stderr.txt
[2025-11-24 05:01:50] -rw-r--r--. 1 boincer umatlas        29 Nov 24 05:01 wrapper_checkpoint.txt
[2025-11-24 05:01:50] HITS file was successfully produced:
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas 929101936 Nov 24 04:58 shared/HITS.pool.root.1
[2025-11-24 05:01:50]  *** Contents of shared directory: ***
[2025-11-24 05:01:50] total 1325348
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas 412050132 Nov 23 00:01 ATLAS.root_0
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 05:01:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:01 input.tar.gz
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas 929101936 Nov 24 04:58 HITS.pool.root.1
[2025-11-24 05:01:50] -rw-------. 1 boincer umatlas  15380480 Nov 24 05:01 result.tar.gz
05:01:52 (2622988): run_atlas exited; CPU time 239063.764012
05:01:52 (2622988): called boinc_finish(0)

</stderr_txt>
]]>

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