Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:25 (1834368): wrapper (7.7.26015): starting
00:02:25 (1834368): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:02:25] Arguments: --nthreads 9
[2025-11-23 00:02:25] Threads: 9
[2025-11-23 00:02:25] Checking for CVMFS
[2025-11-23 00:02:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:28] 2.13.3.0 42195 25143 347872 153197 0 511 31182301 32935937 24501 16776704 0 153025520 99.800 82234048 32902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:02:28] CVMFS is ok
[2025-11-23 00:02:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:28] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:28] Checking for apptainer binary...
[2025-11-23 00:02:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:28] Running /usr/bin/apptainer --version
[2025-11-23 00:02:29] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:30] c-6-3.aglt2.org
[2025-11-23 00:02:30] apptainer works
[2025-11-23 00:02:30] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:02:30] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:02:30] Starting ATLAS job with PandaID=6895336385
[2025-11-23 00:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:37:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:37:30] 2025-11-24 17:36:54,134 | INFO     | monitor loop #4033: job 0:6895336385 is in state 'finished'
[2025-11-24 12:37:30] 2025-11-24 17:36:54,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:37:30] 2025-11-24 17:36:54,891 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:37:30] 2025-11-24 17:36:54,899 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.17465
[2025-11-24 12:37:30] 2025-11-24 17:36:54,907 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895336385/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:37:30] 2025-11-24 17:36:54,908 | INFO     | extracted standard info from prmon json
[2025-11-24 12:37:30] 2025-11-24 17:36:54,908 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:37:30] 2025-11-24 17:36:54,908 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:37:30] 2025-11-24 17:36:54,945 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:37:30] 2025-11-24 17:36:54,948 | INFO     | sum of square deviations: 3094466121160.3174
[2025-11-24 12:37:30] 2025-11-24 17:36:55,056 | INFO     | sum of deviations: 16528704501984.77
[2025-11-24 12:37:30] 2025-11-24 17:36:55,057 | INFO     | mean x: 1763940120.198328
[2025-11-24 12:37:30] 2025-11-24 17:36:55,057 | INFO     | mean y: 3017320.9865304227
[2025-11-24 12:37:30] 2025-11-24 17:36:55,057 | INFO     | intersect: -9418848637.27489
[2025-11-24 12:37:30] 2025-11-24 17:36:55,060 | INFO     | chi2: 17.341647001278684
[2025-11-24 12:37:30] 2025-11-24 17:36:55,063 | INFO     | sum of square deviations: 3072957152086.0933
[2025-11-24 12:37:30] 2025-11-24 17:36:55,169 | INFO     | sum of deviations: 17295283653887.72
[2025-11-24 12:37:30] 2025-11-24 17:36:55,170 | INFO     | mean x: 1763939967.703445
[2025-11-24 12:37:30] 2025-11-24 17:36:55,170 | INFO     | mean y: 3022756.7248603352
[2025-11-24 12:37:30] 2025-11-24 17:36:55,170 | INFO     | intersect: -9924822175.688276
[2025-11-24 12:37:30] 2025-11-24 17:36:55,173 | INFO     | chi2: 14.1196974667321
[2025-11-24 12:37:30] 2025-11-24 17:36:55,173 | INFO     | current chi2=14.1196974667321 (change=18.579259134435233 %)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,173 | INFO     | right removable region: 2147
[2025-11-24 12:37:30] 2025-11-24 17:36:55,176 | INFO     | sum of square deviations: 3072954396170.496
[2025-11-24 12:37:30] 2025-11-24 17:36:55,283 | INFO     | sum of deviations: 15597443537385.932
[2025-11-24 12:37:30] 2025-11-24 17:36:55,283 | INFO     | mean x: 1763940272.7029796
[2025-11-24 12:37:30] 2025-11-24 17:36:55,283 | INFO     | mean y: 3023922.6033519553
[2025-11-24 12:37:30] 2025-11-24 17:36:55,284 | INFO     | intersect: -8950235794.199608
[2025-11-24 12:37:30] 2025-11-24 17:36:55,286 | INFO     | chi2: 12.897589566978615
[2025-11-24 12:37:30] 2025-11-24 17:36:55,287 | INFO     | current chi2=12.897589566978615 (change=25.626501531096714 %)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,289 | INFO     | sum of square deviations: 3051542449121.181
[2025-11-24 12:37:30] 2025-11-24 17:36:55,401 | INFO     | sum of deviations: 14775272212770.9
[2025-11-24 12:37:30] 2025-11-24 17:36:55,401 | INFO     | mean x: 1763940425.2081194
[2025-11-24 12:37:30] 2025-11-24 17:36:55,402 | INFO     | mean y: 3029778.800746617
[2025-11-24 12:37:30] 2025-11-24 17:36:55,402 | INFO     | intersect: -8537798469.243667
[2025-11-24 12:37:30] 2025-11-24 17:36:55,405 | INFO     | chi2: 9.566816445329538
[2025-11-24 12:37:30] 2025-11-24 17:36:55,405 | INFO     | current chi2=9.566816445329538 (change=25.82477217430437 %)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,408 | INFO     | sum of square deviations: 3030230178359.2334
[2025-11-24 12:37:30] 2025-11-24 17:36:55,518 | INFO     | sum of deviations: 14068724979142.914
[2025-11-24 12:37:30] 2025-11-24 17:36:55,519 | INFO     | mean x: 1763940577.7132835
[2025-11-24 12:37:30] 2025-11-24 17:36:55,519 | INFO     | mean y: 3034833.897100094
[2025-11-24 12:37:30] 2025-11-24 17:36:55,519 | INFO     | intersect: -8186572359.849444
[2025-11-24 12:37:30] 2025-11-24 17:36:55,522 | INFO     | chi2: 7.212083268208616
[2025-11-24 12:37:30] 2025-11-24 17:36:55,522 | INFO     | current chi2=7.212083268208616 (change=24.613550292066996 %)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,523 | INFO     | left removable region: 30
[2025-11-24 12:37:30] 2025-11-24 17:36:55,525 | INFO     | sum of square deviations: 2941808045967.531
[2025-11-24 12:37:30] 2025-11-24 17:36:55,634 | INFO     | sum of deviations: 13804013057177.137
[2025-11-24 12:37:30] 2025-11-24 17:36:55,635 | INFO     | mean x: 1763940852.225319
[2025-11-24 12:37:30] 2025-11-24 17:36:55,635 | INFO     | mean y: 3049019.117146906
[2025-11-24 12:37:30] 2025-11-24 17:36:55,635 | INFO     | intersect: -8273990874.62554
[2025-11-24 12:37:30] 2025-11-24 17:36:55,638 | INFO     | chi2: 1.7867053016371823
[2025-11-24 12:37:30] 2025-11-24 17:36:55,638 | INFO     | current memory leak: 4.69 B/s (using 2117 data points, chi2=1.79)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,640 | INFO     | could have reported an average CPU frequency of 2600 MHz (45 samples)
[2025-11-24 12:37:30] 2025-11-24 17:36:55,640 | INFO     | ..............................
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . Timing measurements:
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . get job = 0 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . initial setup = 8 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . payload setup = 79 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . stage-in = 0 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . payload execution = 131365 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . stage-out = 4 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | . log creation = 1 s
[2025-11-24 12:37:30] 2025-11-24 17:36:55,641 | INFO     | ..............................
[2025-11-24 12:37:30] 2025-11-24 17:36:55,724 | INFO     | time since job start (131557s) is within the limit (172800.0s)
[2025-11-24 12:37:30] 2025-11-24 17:36:56,009 | INFO     | 
[2025-11-24 12:37:30] 2025-11-24 17:36:56,009 | INFO     | job summary report
[2025-11-24 12:37:30] 2025-11-24 17:36:56,009 | INFO     | --------------------------------------------------
[2025-11-24 12:37:30] 2025-11-24 17:36:56,009 | INFO     | PanDA job id: 6895336385
[2025-11-24 12:37:30] 2025-11-24 17:36:56,010 | INFO     | task id: 47556149
[2025-11-24 12:37:30] 2025-11-24 17:36:56,010 | INFO     | errors: (none)
[2025-11-24 12:37:30] 2025-11-24 17:36:56,010 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:37:30] 2025-11-24 17:36:56,010 | INFO     | pilot state: finished 
[2025-11-24 12:37:30] 2025-11-24 17:36:56,010 | INFO     | transexitcode: 0
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | exeerrorcode: 0
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | exeerrordiag: 
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | exitcode: 0
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | exitmsg: OK
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | cpuconsumptiontime: 303900 s
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | nevents: 1000
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | neventsw: 0
[2025-11-24 12:37:30] 2025-11-24 17:36:56,011 | INFO     | pid: 1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | pgrp: 1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | corecount: 9
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | event service: False
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | sizes: {0: 2297920, 1: 2298521, 2: 2298633, 3: 2298633, 4: 2298832, 16: 2298860, 27: 2299016, 38: 2299044, 47: 2299334, 50: 2299390, 131449: 2359099, 131455: 23688
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | --------------------------------------------------
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | 
[2025-11-24 12:37:30] 2025-11-24 17:36:56,012 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 12:37:30] 2025-11-24 17:36:56,032 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,032 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,033 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:37:30] 2025-11-24 17:36:56,034 | INFO     | job 6895336385 has completed (purged errors)
[2025-11-24 12:37:30] 2025-11-24 17:36:56,035 | INFO     | overall cleanup function is called
[2025-11-24 12:37:30] 2025-11-24 17:36:57,053 | INFO     | --- collectZombieJob: --- 10, [1872183]
[2025-11-24 12:37:30] 2025-11-24 17:36:57,053 | INFO     | zombie collector waiting for pid 1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:57,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:37:30] 2025-11-24 17:36:57,053 | INFO     | collected zombie processes
[2025-11-24 12:37:30] 2025-11-24 17:36:57,053 | INFO     | will attempt to kill all subprocesses of pid=1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:57,432 | INFO     | process IDs to be killed: [1872183] (in reverse order)
[2025-11-24 12:37:30] 2025-11-24 17:36:57,579 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:37:30] 2025-11-24 17:36:57,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:37:30] 2025-11-24 17:36:57,594 | INFO     | did not find any defunct processes belonging to 1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:57,609 | INFO     | did not find any defunct processes belonging to 1872183
[2025-11-24 12:37:30] 2025-11-24 17:36:57,610 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:37:30] 2025-11-24 17:36:57,610 | INFO     | ready for new job
[2025-11-24 12:37:30] 2025-11-24 17:36:57,610 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:37:30] 2025-11-24 17:36:57,617 | INFO     | ***************************************
[2025-11-24 12:37:30] 2025-11-24 17:36:57,617 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:37:30] 2025-11-24 17:36:57,617 | INFO     | ***************************************
[2025-11-24 12:37:30] 2025-11-24 17:36:57,617 | INFO     | 
[2025-11-24 12:37:30] 2025-11-24 17:36:57,619 | INFO     | architecture information:
[2025-11-24 12:37:30] 2025-11-24 17:36:57,619 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:37:30] 2025-11-24 17:36:57,660 | INFO     | cat /etc/os-release:
[2025-11-24 12:37:30] NAME="CentOS Linux"
[2025-11-24 12:37:30] VERSION="7 (Core)"
[2025-11-24 12:37:30] ID="centos"
[2025-11-24 12:37:30] ID_LIKE="rhel fedora"
[2025-11-24 12:37:30] VERSION_ID="7"
[2025-11-24 12:37:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:37:30] ANSI_COLOR="0;31"
[2025-11-24 12:37:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:37:30] HOME_URL="https://www.centos.org/"
[2025-11-24 12:37:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:37:30] 
[2025-11-24 12:37:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:37:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:37:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:37:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:37:30] 
[2025-11-24 12:37:30] 2025-11-24 17:36:57,661 | INFO     | ***************************************
[2025-11-24 12:37:30] 2025-11-24 17:36:58,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 12:37:30] 2025-11-24 17:36:58,178 | INFO     | sufficient remaining disk space (72359084032 B)
[2025-11-24 12:37:30] 2025-11-24 17:36:58,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | INFO     | update_server=False
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | INFO     | aborting loop
[2025-11-24 12:37:30] 2025-11-24 17:36:58,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:37:30] 2025-11-24 17:36:58,332 | INFO     | all data control threads have been joined
[2025-11-24 12:37:30] 2025-11-24 17:36:59,184 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,184 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,314 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,326 | INFO     | [job] validate thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,337 | INFO     | [data] control thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,647 | INFO     | all payload control threads have been joined
[2025-11-24 12:37:30] 2025-11-24 17:36:59,666 | INFO     | all job control threads have been joined
[2025-11-24 12:37:30] 2025-11-24 17:36:59,791 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:36:59,900 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,185 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,330 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,365 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,433 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,648 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,654 | INFO     | [payload] control thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,671 | INFO     | [job] control thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:00,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:37:30] 2025-11-24 17:37:01,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:37:30] 2025-11-24 17:37:01,751 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:05,161 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:37:30] 2025-11-24 17:37:22,715 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:37:30] 2025-11-24 17:37:24,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241237800768)>', '<ExcThread(monitor, started 140239926449920)>']
[2025-11-24 12:37:30] 2025-11-24 17:37:29,447 | INFO     | PID=1847781 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | INFO     | .. there are 40 such processes running
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:37:30] 2025-11-24 17:37:29,448 | INFO     | [monitor] control thread has ended
[2025-11-24 12:37:30] 2025-11-24 17:37:29,842 | INFO     | all workflow threads have been joined
[2025-11-24 12:37:30] 2025-11-24 17:37:29,842 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:37:30] 2025-11-24 17:37:29,843 | INFO     | traces error code: 0
[2025-11-24 12:37:30] 2025-11-24 17:37:29,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:37:30] 2025-11-24 17:37:30,058 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:37:30] 2025-11-24 17:37:30,067 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:37:30] 2025-11-24 17:37:30,071 [wrapper] pilotpid: 1847781
[2025-11-24 12:37:30] 2025-11-24 17:37:30,075 [wrapper] Pilot exit status: 0
[2025-11-24 12:37:30] 2025-11-24 17:37:30,115 [wrapper] pandaids: 6895336385
[2025-11-24 12:37:30] 2025-11-24 17:37:30,347 [wrapper] cleanup supervisor_pilot  871772 1847782
[2025-11-24 12:37:30] 2025-11-24 17:37:30,356 [wrapper] Test setup, not cleaning
[2025-11-24 12:37:30] 2025-11-24 17:37:30,360 [wrapper] apfmon messages muted
[2025-11-24 12:37:30] 2025-11-24 17:37:30,363 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:37:30] 2025-11-24 17:37:30,366 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:37:30]  *** Error codes and diagnostics ***
[2025-11-24 12:37:30]     "exeErrorCode": 0,
[2025-11-24 12:37:30]     "exeErrorDiag": "",
[2025-11-24 12:37:30]     "pilotErrorCode": 0,
[2025-11-24 12:37:30]     "pilotErrorDiag": "",
[2025-11-24 12:37:30]  *** Listing of results directory ***
[2025-11-24 12:37:30] total 1329084
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:27 queuedata.json
[2025-11-24 12:37:30] -rwx------. 1 boincer umatlas     36292 Nov 22 00:28 runpilot2-wrapper.sh
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:37:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:02 run_atlas
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:02 job.xml
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas 412035778 Nov 23 00:02 EVNT.47483658._001069.pool.root.1
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-24 12:37:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:02 shared
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:02 input.tar.gz
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:02 boinc_lockfile
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas      2781 Nov 23 00:02 pandaJob.out
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas        57 Nov 23 00:02 setup.sh.local
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas    989784 Nov 23 00:04 agis_schedconf.cvmfs.json
[2025-11-24 12:37:30] drwx------. 5 boincer umatlas      4096 Nov 23 00:04 pilot3
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas       533 Nov 24 12:21 boinc_task_state.xml
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas      6657 Nov 24 12:31 init_data.xml
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas 914363951 Nov 24 12:36 HITS.47556149._000551.pool.root.1
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas        95 Nov 24 12:36 pilot_heartbeat.json
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas      1078 Nov 24 12:36 memory_monitor_summary.json
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas   2754045 Nov 24 12:36 log.47556149._000551.job.log.tgz.1
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas      8631 Nov 24 12:36 heartbeat.json
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:37 boinc_mmap_file
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas        29 Nov 24 12:37 wrapper_checkpoint.txt
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas      4824 Nov 24 12:37 pilotlog.txt
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas  12576928 Nov 24 12:37 log.47556149._000551.job.log.1
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas       353 Nov 24 12:37 output.list
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:37 runtime_log
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas  15349760 Nov 24 12:37 result.tar.gz
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas      9329 Nov 24 12:37 runtime_log.err
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas       661 Nov 24 12:37 MvXMDmlLvg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjzJKDmi2ZBAo.diag
[2025-11-24 12:37:30] -rw-r--r--. 1 boincer umatlas     21371 Nov 24 12:37 stderr.txt
[2025-11-24 12:37:30] HITS file was successfully produced:
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas 914363951 Nov 24 12:36 shared/HITS.pool.root.1
[2025-11-24 12:37:30]  *** Contents of shared directory: ***
[2025-11-24 12:37:30] total 1310912
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas 412035778 Nov 23 00:02 ATLAS.root_0
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-24 12:37:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:02 input.tar.gz
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas 914363951 Nov 24 12:36 HITS.pool.root.1
[2025-11-24 12:37:30] -rw-------. 1 boincer umatlas  15349760 Nov 24 12:37 result.tar.gz
12:37:31 (1834368): run_atlas exited; CPU time 305308.000171
12:37:31 (1834368): called boinc_finish(0)

</stderr_txt>
]]>

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