Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:23:42 (18881): wrapper (7.7.26015): starting
22:23:42 (18881): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:23:42] Arguments: --nthreads 8
[2025-11-25 22:23:42] Threads: 8
[2025-11-25 22:23:42] Checking for CVMFS
[2025-11-25 22:23:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:23:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:23:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:23:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:23:45] 2.11.2.0 29208 221445 134792 153298 1 84 17739699 25165824 4632 130560 8 96029691 99.901 38719577 2355 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 22:23:45] CVMFS is ok
[2025-11-25 22:23:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:23:45] Checking for apptainer binary...
[2025-11-25 22:23:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:23:45] Running /usr/bin/apptainer --version
[2025-11-25 22:23:45] apptainer version 1.3.2-1.el7
[2025-11-25 22:23:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:24:15] cg-vwn345.simple-grid.lan
[2025-11-25 22:24:15] apptainer works
[2025-11-25 22:24:15] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:24:15] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:24:15] Starting ATLAS job with PandaID=6891571182
[2025-11-25 22:24:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:50:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:50:15] 2025-11-26 20:49:30,278 | INFO     | monitor loop #5664: job 0:6891571182 is in state 'finished'
[2025-11-26 21:50:15] 2025-11-26 20:49:30,278 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:50:15] 2025-11-26 20:49:31,755 | INFO     | time since job start (84117s) is within the limit (172800.0s)
[2025-11-26 21:50:15] 2025-11-26 20:49:32,788 | INFO     | monitor loop #5665: job 0:6891571182 is in state 'finished'
[2025-11-26 21:50:15] 2025-11-26 20:49:32,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:50:15] 2025-11-26 20:49:32,904 | INFO     | PID=22620 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 21:50:15] 2025-11-26 20:49:32,904 | INFO     | .. there are 9 such processes running
[2025-11-26 21:50:15] 2025-11-26 20:49:33,905 | INFO     | time since job start (84119s) is within the limit (172800.0s)
[2025-11-26 21:50:15] 2025-11-26 20:49:35,293 | INFO     | monitor loop #5666: job 0:6891571182 is in state 'finished'
[2025-11-26 21:50:15] 2025-11-26 20:49:35,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:50:15] 2025-11-26 20:49:35,912 | INFO     | time since job start (84121s) is within the limit (172800.0s)
[2025-11-26 21:50:15] 2025-11-26 20:49:37,800 | INFO     | monitor loop #5667: job 0:6891571182 is in state 'finished'
[2025-11-26 21:50:15] 2025-11-26 20:49:37,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:50:15] 2025-11-26 20:49:37,920 | INFO     | time since job start (84123s) is within the limit (172800.0s)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,440 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:50:15] 2025-11-26 20:49:38,442 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 21:50:15] 2025-11-26 20:49:38,443 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891571182/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,444 | INFO     | extracted standard info from prmon json
[2025-11-26 21:50:15] 2025-11-26 20:49:38,444 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:50:15] 2025-11-26 20:49:38,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:50:15] 2025-11-26 20:49:38,475 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:50:15] 2025-11-26 20:49:38,484 | INFO     | sum of square deviations: 795585401717.8828
[2025-11-26 21:50:15] 2025-11-26 20:49:38,550 | INFO     | sum of deviations: 4040922106326.4756
[2025-11-26 21:50:15] 2025-11-26 20:49:38,550 | INFO     | mean x: 1764148302.1271
[2025-11-26 21:50:15] 2025-11-26 20:49:38,550 | INFO     | mean y: 2837296.227173119
[2025-11-26 21:50:15] 2025-11-26 20:49:38,551 | INFO     | intersect: -8957590908.602568
[2025-11-26 21:50:15] 2025-11-26 20:49:38,552 | INFO     | chi2: 21.676444141383
[2025-11-26 21:50:15] 2025-11-26 20:49:38,554 | INFO     | sum of square deviations: 786900481571.5093
[2025-11-26 21:50:15] 2025-11-26 20:49:38,610 | INFO     | sum of deviations: 4494033167840.422
[2025-11-26 21:50:15] 2025-11-26 20:49:38,611 | INFO     | mean x: 1764148149.6312318
[2025-11-26 21:50:15] 2025-11-26 20:49:38,611 | INFO     | mean y: 2845251.6568914955
[2025-11-26 21:50:15] 2025-11-26 20:49:38,611 | INFO     | intersect: -10072304634.633524
[2025-11-26 21:50:15] 2025-11-26 20:49:38,613 | INFO     | chi2: 18.538116237842626
[2025-11-26 21:50:15] 2025-11-26 20:49:38,613 | INFO     | current chi2=18.538116237842626 (change=14.478056839354572 %)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,613 | INFO     | right removable region: 1363
[2025-11-26 21:50:15] 2025-11-26 20:49:38,615 | INFO     | sum of square deviations: 786899540341.5093
[2025-11-26 21:50:15] 2025-11-26 20:49:38,672 | INFO     | sum of deviations: 3455256405032.4443
[2025-11-26 21:50:15] 2025-11-26 20:49:38,672 | INFO     | mean x: 1764148454.6312318
[2025-11-26 21:50:15] 2025-11-26 20:49:38,672 | INFO     | mean y: 2847578.9332844573
[2025-11-26 21:50:15] 2025-11-26 20:49:38,672 | INFO     | intersect: -7743484620.787162
[2025-11-26 21:50:15] 2025-11-26 20:49:38,674 | INFO     | chi2: 16.650550854989202
[2025-11-26 21:50:15] 2025-11-26 20:49:38,674 | INFO     | current chi2=16.650550854989202 (change=23.185967465940365 %)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,674 | INFO     | left removable region: 10
[2025-11-26 21:50:15] 2025-11-26 20:49:38,676 | INFO     | sum of square deviations: 768014766877.3188
[2025-11-26 21:50:15] 2025-11-26 20:49:38,725 | INFO     | sum of deviations: 3489556948754.8467
[2025-11-26 21:50:15] 2025-11-26 20:49:38,725 | INFO     | mean x: 1764148424.1404288
[2025-11-26 21:50:15] 2025-11-26 20:49:38,725 | INFO     | mean y: 2867055.211382114
[2025-11-26 21:50:15] 2025-11-26 20:49:38,725 | INFO     | intersect: -8012729333.806369
[2025-11-26 21:50:15] 2025-11-26 20:49:38,727 | INFO     | chi2: 8.53371924860885
[2025-11-26 21:50:15] 2025-11-26 20:49:38,727 | INFO     | current memory leak: 4.54 B/s (using 1353 data points, chi2=8.53)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | ..............................
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . Timing measurements:
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . get job = 0 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . initial setup = 9 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . payload setup = 161 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . stage-in = 0 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . payload execution = 83658 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,729 | INFO     | . stage-out = 10 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,730 | INFO     | . log creation = 2 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,730 | INFO     | ..............................
[2025-11-26 21:50:15] 2025-11-26 20:49:38,883 | INFO     | 
[2025-11-26 21:50:15] 2025-11-26 20:49:38,883 | INFO     | job summary report
[2025-11-26 21:50:15] 2025-11-26 20:49:38,883 | INFO     | --------------------------------------------------
[2025-11-26 21:50:15] 2025-11-26 20:49:38,883 | INFO     | PanDA job id: 6891571182
[2025-11-26 21:50:15] 2025-11-26 20:49:38,883 | INFO     | task id: 47493068
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | errors: (none)
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | pilot state: finished 
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | transexitcode: 0
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | exeerrorcode: 0
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | exeerrordiag: 
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | exitcode: 0
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | exitmsg: OK
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | cpuconsumptiontime: 315247 s
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | nevents: 1000
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | neventsw: 0
[2025-11-26 21:50:15] 2025-11-26 20:49:38,884 | INFO     | pid: 29405
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | pgrp: 29405
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | corecount: 8
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | event service: False
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | sizes: {0: 2283476, 1: 2284162, 2: 2284361, 13: 2284361, 23: 2284417, 34: 2284445, 45: 2284601, 56: 2284629, 66: 2284657, 77: 2284685, 88: 2284741, 99: 2285049, 10
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | --------------------------------------------------
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | 
[2025-11-26 21:50:15] 2025-11-26 20:49:38,885 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,307 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:50:15] 2025-11-26 20:49:39,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:50:15] 2025-11-26 20:49:39,309 | INFO     | job 6891571182 has completed (purged errors)
[2025-11-26 21:50:15] 2025-11-26 20:49:39,309 | INFO     | overall cleanup function is called
[2025-11-26 21:50:15] 2025-11-26 20:49:40,325 | INFO     | --- collectZombieJob: --- 10, [29405]
[2025-11-26 21:50:15] 2025-11-26 20:49:40,325 | INFO     | zombie collector waiting for pid 29405
[2025-11-26 21:50:15] 2025-11-26 20:49:40,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:50:15] 2025-11-26 20:49:40,326 | INFO     | collected zombie processes
[2025-11-26 21:50:15] 2025-11-26 20:49:40,326 | INFO     | will attempt to kill all subprocesses of pid=29405
[2025-11-26 21:50:15] 2025-11-26 20:49:40,456 | INFO     | process IDs to be killed: [29405] (in reverse order)
[2025-11-26 21:50:15] 2025-11-26 20:49:41,206 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:50:15] 2025-11-26 20:49:41,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:50:15] 2025-11-26 20:49:41,209 | INFO     | did not find any defunct processes belonging to 29405
[2025-11-26 21:50:15] 2025-11-26 20:49:41,211 | INFO     | did not find any defunct processes belonging to 29405
[2025-11-26 21:50:15] 2025-11-26 20:49:41,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:50:15] 2025-11-26 20:49:41,277 | INFO     | ready for new job
[2025-11-26 21:50:15] 2025-11-26 20:49:41,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:50:15] 2025-11-26 20:49:41,282 | INFO     | ***************************************
[2025-11-26 21:50:15] 2025-11-26 20:49:41,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:50:15] 2025-11-26 20:49:41,282 | INFO     | ***************************************
[2025-11-26 21:50:15] 2025-11-26 20:49:41,282 | INFO     | 
[2025-11-26 21:50:15] 2025-11-26 20:49:41,283 | INFO     | pilot is running in a VM
[2025-11-26 21:50:15] 2025-11-26 20:49:41,283 | INFO     | architecture information:
[2025-11-26 21:50:15] 2025-11-26 20:49:41,294 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:50:15] 2025-11-26 20:49:41,613 | INFO     | cat /etc/os-release:
[2025-11-26 21:50:15] NAME="CentOS Linux"
[2025-11-26 21:50:15] VERSION="7 (Core)"
[2025-11-26 21:50:15] ID="centos"
[2025-11-26 21:50:15] ID_LIKE="rhel fedora"
[2025-11-26 21:50:15] VERSION_ID="7"
[2025-11-26 21:50:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:50:15] ANSI_COLOR="0;31"
[2025-11-26 21:50:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:50:15] HOME_URL="https://www.centos.org/"
[2025-11-26 21:50:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:50:15] 
[2025-11-26 21:50:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:50:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:50:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:50:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:50:15] 
[2025-11-26 21:50:15] 2025-11-26 20:49:41,614 | INFO     | ***************************************
[2025-11-26 21:50:15] 2025-11-26 20:49:42,117 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-26 21:50:15] 2025-11-26 20:49:42,389 | INFO     | sufficient remaining disk space (495321088000 B)
[2025-11-26 21:50:15] 2025-11-26 20:49:42,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:50:15] 2025-11-26 20:49:42,389 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:50:15] 2025-11-26 20:49:42,389 | INFO     | update_server=False
[2025-11-26 21:50:15] 2025-11-26 20:49:42,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:50:15] 2025-11-26 20:49:42,430 | INFO     | all payload control threads have been joined
[2025-11-26 21:50:15] 2025-11-26 20:49:42,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:50:15] 2025-11-26 20:49:42,495 | INFO     | all data control threads have been joined
[2025-11-26 21:50:15] 2025-11-26 20:49:42,828 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:50:15] 2025-11-26 20:49:42,828 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:50:15] 2025-11-26 20:49:42,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:50:15] 2025-11-26 20:49:42,829 | INFO     | will abort loop
[2025-11-26 21:50:15] 2025-11-26 20:49:43,155 | INFO     | all job control threads have been joined
[2025-11-26 21:50:15] 2025-11-26 20:49:43,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:50:15] 2025-11-26 20:49:43,395 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:43,436 | INFO     | [payload] control thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:43,501 | INFO     | [data] control thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:43,834 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:43,872 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:43,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:50:15] 2025-11-26 20:49:44,161 | INFO     | [job] control thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,276 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,371 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,516 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,752 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,804 | INFO     | [job] validate thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,841 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:44,910 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:45,382 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:49:46,477 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:50:15] 2025-11-26 20:50:00,787 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:50:15] 2025-11-26 20:50:00,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647293241152)>', '<ExcThread(monitor, started 139646986065664)>']
[2025-11-26 21:50:15] 2025-11-26 20:50:05,971 | INFO     | all workflow threads have been joined
[2025-11-26 21:50:15] 2025-11-26 20:50:05,971 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:50:15] 2025-11-26 20:50:05,972 | INFO     | traces error code: 0
[2025-11-26 21:50:15] 2025-11-26 20:50:05,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:50:15] 2025-11-26 20:50:11,071 | INFO     | PID=22620 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 21:50:15] 2025-11-26 20:50:11,074 | INFO     | .. there are 9 such processes running
[2025-11-26 21:50:15] 2025-11-26 20:50:11,074 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:50:15] 2025-11-26 20:50:11,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:50:15] 2025-11-26 20:50:11,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:50:15] 2025-11-26 20:50:11,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:50:15] 2025-11-26 20:50:11,075 | INFO     | [monitor] control thread has ended
[2025-11-26 21:50:15] 2025-11-26 20:50:11,343 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:50:15] 2025-11-26 20:50:11,462 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:50:15] 2025-11-26 20:50:11,563 [wrapper] pilotpid: 22620
[2025-11-26 21:50:15] 2025-11-26 20:50:11,656 [wrapper] Pilot exit status: 0
[2025-11-26 21:50:15] 2025-11-26 20:50:12,023 [wrapper] pandaids: 6891571182
[2025-11-26 21:50:15] 2025-11-26 20:50:13,202 [wrapper] cleanup supervisor_pilot 21799 22621
[2025-11-26 21:50:15] 2025-11-26 20:50:13,277 [wrapper] Test setup, not cleaning
[2025-11-26 21:50:15] 2025-11-26 20:50:13,314 [wrapper] apfmon messages muted
[2025-11-26 21:50:15] 2025-11-26 20:50:13,360 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:50:15] 2025-11-26 20:50:13,428 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:50:15]  *** Error codes and diagnostics ***
[2025-11-26 21:50:15]     "exeErrorCode": 0,
[2025-11-26 21:50:15]     "exeErrorDiag": "",
[2025-11-26 21:50:15]     "pilotErrorCode": 0,
[2025-11-26 21:50:15]     "pilotErrorDiag": "",
[2025-11-26 21:50:15]  *** Listing of results directory ***
[2025-11-26 21:50:15] total 1330144
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:45 queuedata.json
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-26 21:50:15] -rwx------. 1 boinc boinc     36292 Nov 18 16:48 runpilot2-wrapper.sh
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc       100 Nov 25 22:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:50:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 22:23 run_atlas
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc       105 Nov 25 22:23 job.xml
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc 410976718 Nov 25 22:23 EVNT.47493065._000271.pool.root.1
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc      6392 Nov 25 22:23 init_data.xml
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc     15120 Nov 25 22:23 start_atlas.sh
[2025-11-26 21:50:15] drwxrwx--x. 2 boinc boinc        68 Nov 25 22:23 shared
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc    590099 Nov 25 22:23 input.tar.gz
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc         0 Nov 25 22:23 boinc_lockfile
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc      2773 Nov 25 22:24 pandaJob.out
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc    991893 Nov 25 22:27 agis_schedconf.cvmfs.json
[2025-11-26 21:50:15] drwx------. 5 boinc boinc      4096 Nov 25 22:27 pilot3
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc       533 Nov 26 21:32 boinc_task_state.xml
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc 919822434 Nov 26 21:46 HITS.47493068._002707.pool.root.1
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc      1029 Nov 26 21:47 memory_monitor_summary.json
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc   1516240 Nov 26 21:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc   2464991 Nov 26 21:48 log.47493068._002707.job.log.tgz.1
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc        95 Nov 26 21:49 pilot_heartbeat.json
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc      7943 Nov 26 21:49 heartbeat.json
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc      8192 Nov 26 21:50 boinc_mmap_file
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc        29 Nov 26 21:50 wrapper_checkpoint.txt
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc       820 Nov 26 21:50 pilotlog.txt
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc  11221544 Nov 26 21:50 log.47493068._002707.job.log.1
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc       353 Nov 26 21:50 output.list
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc       620 Nov 26 21:50 runtime_log
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc  13701120 Nov 26 21:50 result.tar.gz
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc      8717 Nov 26 21:50 runtime_log.err
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc       662 Nov 26 21:50 7Q8MDmX7cf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRgFKDm8ZigMo.diag
[2025-11-26 21:50:15] -rw-r--r--. 1 boinc boinc     21492 Nov 26 21:50 stderr.txt
[2025-11-26 21:50:15] HITS file was successfully produced:
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc 919822434 Nov 26 21:46 shared/HITS.pool.root.1
[2025-11-26 21:50:15]  *** Contents of shared directory: ***
[2025-11-26 21:50:15] total 1313592
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc 410976718 Nov 25 22:23 ATLAS.root_0
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc     15120 Nov 25 22:23 start_atlas.sh
[2025-11-26 21:50:15] -rw-r--r--. 2 boinc boinc    590099 Nov 25 22:23 input.tar.gz
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc 919822434 Nov 26 21:46 HITS.pool.root.1
[2025-11-26 21:50:15] -rw-------. 1 boinc boinc  13701120 Nov 26 21:50 result.tar.gz
21:50:17 (18881): run_atlas exited; CPU time 315816.559336
21:50:17 (18881): called boinc_finish(0)

</stderr_txt>
]]>

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