Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:49 (2158763): wrapper (7.7.26015): starting
00:00:49 (2158763): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:00:49] Arguments: --nthreads 9
[2025-11-24 00:00:49] Threads: 9
[2025-11-24 00:00:49] Checking for CVMFS
[2025-11-24 00:00:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:51] 2.13.3.0 9863 26588 315736 153233 0 155 17794642 32935936 21390 16776704 0 152619027 99.800 80789675 33562 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:00:51] CVMFS is ok
[2025-11-24 00:00:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:51] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:51] Checking for apptainer binary...
[2025-11-24 00:00:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:51] Running /usr/bin/apptainer --version
[2025-11-24 00:00:51] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:52] c-5-3.aglt2.org
[2025-11-24 00:00:52] apptainer works
[2025-11-24 00:00:52] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:00:52] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:00:52] Starting ATLAS job with PandaID=6894287253
[2025-11-24 00:00:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:22:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:22:18] 2025-11-24 18:21:44,427 | INFO     | time since job start (48011s) is within the limit (172800.0s)
[2025-11-24 13:22:18] 2025-11-24 18:21:44,776 | INFO     | monitor loop #3315: job 0:6894287253 is in state 'finished'
[2025-11-24 13:22:18] 2025-11-24 18:21:44,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,725 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:22:18] 2025-11-24 18:21:45,731 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0446499999994
[2025-11-24 13:22:18] 2025-11-24 18:21:45,736 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894287253/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,737 | INFO     | extracted standard info from prmon json
[2025-11-24 13:22:18] 2025-11-24 18:21:45,737 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:22:18] 2025-11-24 18:21:45,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:22:18] 2025-11-24 18:21:45,746 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:22:18] 2025-11-24 18:21:45,747 | INFO     | sum of square deviations: 150570441609.03366
[2025-11-24 13:22:18] 2025-11-24 18:21:45,762 | INFO     | sum of deviations: 1879332524791.52
[2025-11-24 13:22:18] 2025-11-24 18:21:45,762 | INFO     | mean x: 1763984510.0941477
[2025-11-24 13:22:18] 2025-11-24 18:21:45,762 | INFO     | mean y: 3072774.9389312975
[2025-11-24 13:22:18] 2025-11-24 18:21:45,762 | INFO     | intersect: -22013954123.715477
[2025-11-24 13:22:18] 2025-11-24 18:21:45,763 | INFO     | chi2: 6.526188810881101
[2025-11-24 13:22:18] 2025-11-24 18:21:45,763 | INFO     | sum of square deviations: 147715302599.7569
[2025-11-24 13:22:18] 2025-11-24 18:21:45,772 | INFO     | sum of deviations: 2129330935138.5168
[2025-11-24 13:22:18] 2025-11-24 18:21:45,772 | INFO     | mean x: 1763984357.5979514
[2025-11-24 13:22:18] 2025-11-24 18:21:45,772 | INFO     | mean y: 3086122.071702945
[2025-11-24 13:22:18] 2025-11-24 18:21:45,772 | INFO     | intersect: -25424925706.27047
[2025-11-24 13:22:18] 2025-11-24 18:21:45,773 | INFO     | chi2: 3.780614736324905
[2025-11-24 13:22:18] 2025-11-24 18:21:45,773 | INFO     | current chi2=3.780614736324905 (change=42.07009870720421 %)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,774 | INFO     | sum of square deviations: 144896489852.95734
[2025-11-24 13:22:18] 2025-11-24 18:21:45,782 | INFO     | sum of deviations: 2148542904984.1267
[2025-11-24 13:22:18] 2025-11-24 18:21:45,783 | INFO     | mean x: 1763984205.101804
[2025-11-24 13:22:18] 2025-11-24 18:21:45,783 | INFO     | mean y: 3087151.125
[2025-11-24 13:22:18] 2025-11-24 18:21:45,783 | INFO     | intersect: -26153486774.314312
[2025-11-24 13:22:18] 2025-11-24 18:21:45,783 | INFO     | chi2: 3.584606424705885
[2025-11-24 13:22:18] 2025-11-24 18:21:45,783 | INFO     | current chi2=3.584606424705885 (change=5.184561910943549 %)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,784 | INFO     | right removable region: 775
[2025-11-24 13:22:18] 2025-11-24 18:21:45,784 | INFO     | sum of square deviations: 147715017729.75717
[2025-11-24 13:22:18] 2025-11-24 18:21:45,793 | INFO     | sum of deviations: 1586327164631.5837
[2025-11-24 13:22:18] 2025-11-24 18:21:45,793 | INFO     | mean x: 1763984662.5979514
[2025-11-24 13:22:18] 2025-11-24 18:21:45,793 | INFO     | mean y: 3088415.3649167735
[2025-11-24 13:22:18] 2025-11-24 18:21:45,793 | INFO     | intersect: -18940529039.916348
[2025-11-24 13:22:18] 2025-11-24 18:21:45,794 | INFO     | chi2: 3.4082531195152965
[2025-11-24 13:22:18] 2025-11-24 18:21:45,794 | INFO     | current chi2=3.4082531195152965 (change=47.7757506213623 %)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,795 | INFO     | sum of square deviations: 144896158194.943
[2025-11-24 13:22:18] 2025-11-24 18:21:45,803 | INFO     | sum of deviations: 1490493473069.718
[2025-11-24 13:22:18] 2025-11-24 18:21:45,803 | INFO     | mean x: 1763984815.0953608
[2025-11-24 13:22:18] 2025-11-24 18:21:45,804 | INFO     | mean y: 3093591.9226804124
[2025-11-24 13:22:18] 2025-11-24 18:21:45,804 | INFO     | intersect: -18142369243.30583
[2025-11-24 13:22:18] 2025-11-24 18:21:45,804 | INFO     | chi2: 3.1098269577447106
[2025-11-24 13:22:18] 2025-11-24 18:21:45,804 | INFO     | current chi2=3.1098269577447106 (change=8.75598587621997 %)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,804 | INFO     | left removable region: 20
[2025-11-24 13:22:18] 2025-11-24 18:21:45,805 | INFO     | sum of square deviations: 133448243170.37874
[2025-11-24 13:22:18] 2025-11-24 18:21:45,813 | INFO     | sum of deviations: 1641908694201.575
[2025-11-24 13:22:18] 2025-11-24 18:21:45,813 | INFO     | mean x: 1763984784.605298
[2025-11-24 13:22:18] 2025-11-24 18:21:45,813 | INFO     | mean y: 3114557.2066225167
[2025-11-24 13:22:18] 2025-11-24 18:21:45,813 | INFO     | intersect: -21700445455.830837
[2025-11-24 13:22:18] 2025-11-24 18:21:45,814 | INFO     | chi2: 0.08292811861725043
[2025-11-24 13:22:18] 2025-11-24 18:21:45,814 | INFO     | current memory leak: 12.30 B/s (using 755 data points, chi2=0.08)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | could have reported an average CPU frequency of 2600 MHz (30 samples)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | ..............................
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . Timing measurements:
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . get job = 0 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . initial setup = 4 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . payload setup = 17 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . stage-in = 0 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . payload execution = 47942 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,815 | INFO     | . stage-out = 3 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,816 | INFO     | . log creation = 0 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,816 | INFO     | ..............................
[2025-11-24 13:22:18] 2025-11-24 18:21:45,918 | INFO     | 
[2025-11-24 13:22:18] 2025-11-24 18:21:45,918 | INFO     | job summary report
[2025-11-24 13:22:18] 2025-11-24 18:21:45,918 | INFO     | --------------------------------------------------
[2025-11-24 13:22:18] 2025-11-24 18:21:45,918 | INFO     | PanDA job id: 6894287253
[2025-11-24 13:22:18] 2025-11-24 18:21:45,918 | INFO     | task id: 47533967
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | errors: (none)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | pilot state: finished 
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | transexitcode: 0
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | exeerrorcode: 0
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | exeerrordiag: 
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | exitcode: 0
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | exitmsg: OK
[2025-11-24 13:22:18] 2025-11-24 18:21:45,919 | INFO     | cpuconsumptiontime: 300468 s
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | nevents: 1000
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | neventsw: 0
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | pid: 2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | pgrp: 2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | corecount: 9
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | event service: False
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | sizes: {0: 2298579, 1: 2298834, 12: 2298834, 16: 2299124, 23: 2299152, 47964: 2347507, 47968: 2357292, 47969: 2357348, 47974: 2357594}
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | --------------------------------------------------
[2025-11-24 13:22:18] 2025-11-24 18:21:45,920 | INFO     | 
[2025-11-24 13:22:18] 2025-11-24 18:21:45,921 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 13:22:18] 2025-11-24 18:21:45,939 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,941 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,942 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:22:18] 2025-11-24 18:21:45,942 | INFO     | job 6894287253 has completed (purged errors)
[2025-11-24 13:22:18] 2025-11-24 18:21:45,942 | INFO     | overall cleanup function is called
[2025-11-24 13:22:18] 2025-11-24 18:21:46,960 | INFO     | --- collectZombieJob: --- 10, [2171869]
[2025-11-24 13:22:18] 2025-11-24 18:21:46,960 | INFO     | zombie collector waiting for pid 2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:46,960 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:22:18] 2025-11-24 18:21:46,960 | INFO     | collected zombie processes
[2025-11-24 13:22:18] 2025-11-24 18:21:46,960 | INFO     | will attempt to kill all subprocesses of pid=2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:47,378 | INFO     | process IDs to be killed: [2171869] (in reverse order)
[2025-11-24 13:22:18] 2025-11-24 18:21:47,487 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:22:18] 2025-11-24 18:21:47,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:22:18] 2025-11-24 18:21:47,502 | INFO     | did not find any defunct processes belonging to 2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:47,517 | INFO     | did not find any defunct processes belonging to 2171869
[2025-11-24 13:22:18] 2025-11-24 18:21:47,518 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:22:18] 2025-11-24 18:21:47,519 | INFO     | ready for new job
[2025-11-24 13:22:18] 2025-11-24 18:21:47,519 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:22:18] 2025-11-24 18:21:47,523 | INFO     | ***************************************
[2025-11-24 13:22:18] 2025-11-24 18:21:47,524 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:22:18] 2025-11-24 18:21:47,524 | INFO     | ***************************************
[2025-11-24 13:22:18] 2025-11-24 18:21:47,524 | INFO     | 
[2025-11-24 13:22:18] 2025-11-24 18:21:47,526 | INFO     | architecture information:
[2025-11-24 13:22:18] 2025-11-24 18:21:47,527 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:22:18] 2025-11-24 18:21:47,539 | INFO     | cat /etc/os-release:
[2025-11-24 13:22:18] NAME="CentOS Linux"
[2025-11-24 13:22:18] VERSION="7 (Core)"
[2025-11-24 13:22:18] ID="centos"
[2025-11-24 13:22:18] ID_LIKE="rhel fedora"
[2025-11-24 13:22:18] VERSION_ID="7"
[2025-11-24 13:22:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:22:18] ANSI_COLOR="0;31"
[2025-11-24 13:22:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:22:18] HOME_URL="https://www.centos.org/"
[2025-11-24 13:22:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:22:18] 
[2025-11-24 13:22:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:22:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:22:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:22:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:22:18] 
[2025-11-24 13:22:18] 2025-11-24 18:21:47,540 | INFO     | ***************************************
[2025-11-24 13:22:18] 2025-11-24 18:21:48,042 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 13:22:18] 2025-11-24 18:21:48,058 | INFO     | sufficient remaining disk space (72355938304 B)
[2025-11-24 13:22:18] 2025-11-24 18:21:48,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:22:18] 2025-11-24 18:21:48,059 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:22:18] 2025-11-24 18:21:48,059 | INFO     | update_server=False
[2025-11-24 13:22:18] 2025-11-24 18:21:48,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:22:18] 2025-11-24 18:21:48,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:22:18] 2025-11-24 18:21:48,198 | INFO     | all payload control threads have been joined
[2025-11-24 13:22:18] 2025-11-24 18:21:48,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:22:18] 2025-11-24 18:21:48,289 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:22:18] 2025-11-24 18:21:48,289 | INFO     | aborting loop
[2025-11-24 13:22:18] 2025-11-24 18:21:49,019 | INFO     | all data control threads have been joined
[2025-11-24 13:22:18] 2025-11-24 18:21:49,061 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,082 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,203 | INFO     | [payload] control thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,294 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,526 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,534 | INFO     | all job control threads have been joined
[2025-11-24 13:22:18] 2025-11-24 18:21:49,560 | INFO     | [job] validate thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:49,899 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,024 | INFO     | [data] control thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,169 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,254 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,341 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,376 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,398 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,540 | INFO     | [job] control thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:50,927 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:22:18] 2025-11-24 18:21:51,932 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:52,065 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:22:18] 2025-11-24 18:21:54,563 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:22:18] 2025-11-24 18:21:55,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562353387328)>', '<ExcThread(monitor, started 140561252083456)>']
[2025-11-24 13:22:18] 2025-11-24 18:22:00,992 | INFO     | all workflow threads have been joined
[2025-11-24 13:22:18] 2025-11-24 18:22:00,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:22:18] 2025-11-24 18:22:00,992 | INFO     | traces error code: 0
[2025-11-24 13:22:18] 2025-11-24 18:22:00,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:22:18] 2025-11-24 18:22:17,991 | INFO     | PID=2163832 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:22:18] 2025-11-24 18:22:17,992 | INFO     | .. there are 39 such processes running
[2025-11-24 13:22:18] 2025-11-24 18:22:17,993 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:22:18] 2025-11-24 18:22:17,993 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:22:18] 2025-11-24 18:22:17,993 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:22:18] 2025-11-24 18:22:17,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:22:18] 2025-11-24 18:22:17,993 | INFO     | [monitor] control thread has ended
[2025-11-24 13:22:18] 2025-11-24 18:22:18,202 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:22:18] 2025-11-24 18:22:18,205 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:22:18] 2025-11-24 18:22:18,208 [wrapper] pilotpid: 2163832
[2025-11-24 13:22:18] 2025-11-24 18:22:18,211 [wrapper] Pilot exit status: 0
[2025-11-24 13:22:18] 2025-11-24 18:22:18,221 [wrapper] pandaids: 6894287253
[2025-11-24 13:22:18] 2025-11-24 18:22:18,292 [wrapper] cleanup supervisor_pilot  725852 2163833
[2025-11-24 13:22:18] 2025-11-24 18:22:18,295 [wrapper] Test setup, not cleaning
[2025-11-24 13:22:18] 2025-11-24 18:22:18,299 [wrapper] apfmon messages muted
[2025-11-24 13:22:18] 2025-11-24 18:22:18,302 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:22:18] 2025-11-24 18:22:18,305 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:22:18]  *** Error codes and diagnostics ***
[2025-11-24 13:22:18]     "exeErrorCode": 0,
[2025-11-24 13:22:18]     "exeErrorDiag": "",
[2025-11-24 13:22:18]     "pilotErrorCode": 0,
[2025-11-24 13:22:18]     "pilotErrorDiag": "",
[2025-11-24 13:22:18]  *** Listing of results directory ***
[2025-11-24 13:22:18] total 1328360
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:34 pilot3.tar.gz
[2025-11-24 13:22:18] -rwx------. 1 boincer umatlas     36292 Nov 21 05:37 runpilot2-wrapper.sh
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 05:37 queuedata.json
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:22:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas 407421607 Nov 24 00:00 EVNT.47493127._002373.pool.root.1
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:00 input.tar.gz
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-24 13:22:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:00 pandaJob.out
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas        57 Nov 24 00:00 setup.sh.local
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas    989786 Nov 24 00:01 agis_schedconf.cvmfs.json
[2025-11-24 13:22:18] drwx------. 5 boincer umatlas      4096 Nov 24 00:01 pilot3
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas       533 Nov 24 13:12 boinc_task_state.xml
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas 931452386 Nov 24 13:21 HITS.47533967._003443.pool.root.1
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas      1058 Nov 24 13:21 memory_monitor_summary.json
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:21 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas   2131834 Nov 24 13:21 log.47533967._003443.job.log.tgz.1
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas      6705 Nov 24 13:21 init_data.xml
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas      8613 Nov 24 13:21 heartbeat.json
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:22 boinc_mmap_file
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas        29 Nov 24 13:22 wrapper_checkpoint.txt
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas        95 Nov 24 13:22 pilot_heartbeat.json
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas       823 Nov 24 13:22 pilotlog.txt
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas   6597008 Nov 24 13:22 log.47533967._003443.job.log.1
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas       353 Nov 24 13:22 output.list
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:22 runtime_log
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas   8744960 Nov 24 13:22 result.tar.gz
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas       657 Nov 24 13:22 VDWKDm6gdg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCXHKDm4UuJln.diag
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas      9328 Nov 24 13:22 runtime_log.err
[2025-11-24 13:22:18] -rw-r--r--. 1 boincer umatlas     21347 Nov 24 13:22 stderr.txt
[2025-11-24 13:22:18] HITS file was successfully produced:
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas 931452386 Nov 24 13:21 shared/HITS.pool.root.1
[2025-11-24 13:22:18]  *** Contents of shared directory: ***
[2025-11-24 13:22:18] total 1316640
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas 407421607 Nov 24 00:00 ATLAS.root_0
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:00 input.tar.gz
[2025-11-24 13:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas 931452386 Nov 24 13:21 HITS.pool.root.1
[2025-11-24 13:22:18] -rw-------. 1 boincer umatlas   8744960 Nov 24 13:22 result.tar.gz
13:22:20 (2158763): run_atlas exited; CPU time 301153.573736
13:22:20 (2158763): called boinc_finish(0)

</stderr_txt>
]]>

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