Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:36:03 (7221): wrapper (7.7.26015): starting
22:36:03 (7221): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 22:36:03] Arguments: --nthreads 12
[2025-11-22 22:36:03] Threads: 12
[2025-11-22 22:36:03] Checking for CVMFS
[2025-11-22 22:36:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:36:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:36:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:36:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:36:04] 2.11.2.0 2925 282830 93312 153195 2 82 12919600 20275201 1 130560 1 126450472 99.975 15607553 13597 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 22:36:04] CVMFS is ok
[2025-11-22 22:36:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:36:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:36:04] Further information can be found at the LHC@home message board.
[2025-11-22 22:36:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:36:04] Checking for apptainer binary...
[2025-11-22 22:36:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:36:04] Running /usr/bin/apptainer --version
[2025-11-22 22:36:04] apptainer version 1.3.2-1.el7
[2025-11-22 22:36:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:36:05] c-205-10.aglt2.org
[2025-11-22 22:36:05] apptainer works
[2025-11-22 22:36:05] Set ATHENA_PROC_NUMBER=12
[2025-11-22 22:36:05] Set ATHENA_CORE_NUMBER=12
[2025-11-22 22:36:05] Starting ATLAS job with PandaID=6895335652
[2025-11-22 22:36:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 07:50:17]  *** The last 200 lines of the pilot log: ***
[2025-11-23 07:50:17] 2025-11-23 12:49:44,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,185 | INFO     | time since job start (33203s) is within the limit (172800.0s)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,305 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 07:50:17] 2025-11-23 12:49:44,308 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,311 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895335652/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,311 | INFO     | extracted standard info from prmon json
[2025-11-23 07:50:17] 2025-11-23 12:49:44,312 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 07:50:17] 2025-11-23 12:49:44,312 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 07:50:17] 2025-11-23 12:49:44,321 | INFO     | fitting pss+swap vs Time
[2025-11-23 07:50:17] 2025-11-23 12:49:44,322 | INFO     | sum of square deviations: 49919686141.875
[2025-11-23 07:50:17] 2025-11-23 12:49:44,329 | INFO     | sum of deviations: 683461960111.1251
[2025-11-23 07:50:17] 2025-11-23 12:49:44,329 | INFO     | mean x: 1763885573.5625
[2025-11-23 07:50:17] 2025-11-23 12:49:44,329 | INFO     | mean y: 3433099.849264706
[2025-11-23 07:50:17] 2025-11-23 12:49:44,329 | INFO     | intersect: -24146331946.599834
[2025-11-23 07:50:17] 2025-11-23 12:49:44,330 | INFO     | chi2: 5.65709415251151
[2025-11-23 07:50:17] 2025-11-23 12:49:44,331 | INFO     | sum of square deviations: 48555838381.85538
[2025-11-23 07:50:17] 2025-11-23 12:49:44,339 | INFO     | sum of deviations: 878787376279.0182
[2025-11-23 07:50:17] 2025-11-23 12:49:44,339 | INFO     | mean x: 1763885421.0630798
[2025-11-23 07:50:17] 2025-11-23 12:49:44,339 | INFO     | mean y: 3454923.9406307978
[2025-11-23 07:50:17] 2025-11-23 12:49:44,339 | INFO     | intersect: -31920208488.94522
[2025-11-23 07:50:17] 2025-11-23 12:49:44,340 | INFO     | chi2: 3.0165682201924278
[2025-11-23 07:50:17] 2025-11-23 12:49:44,340 | INFO     | current chi2=3.0165682201924278 (change=46.67636530579574 %)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,341 | INFO     | sum of square deviations: 47217060859.335266
[2025-11-23 07:50:17] 2025-11-23 12:49:44,346 | INFO     | sum of deviations: 932518747226.2961
[2025-11-23 07:50:17] 2025-11-23 12:49:44,346 | INFO     | mean x: 1763885268.5636704
[2025-11-23 07:50:17] 2025-11-23 12:49:44,347 | INFO     | mean y: 3461022.7265917603
[2025-11-23 07:50:17] 2025-11-23 12:49:44,347 | INFO     | intersect: -34832592957.67928
[2025-11-23 07:50:17] 2025-11-23 12:49:44,347 | INFO     | chi2: 2.627920713513248
[2025-11-23 07:50:17] 2025-11-23 12:49:44,347 | INFO     | current chi2=2.627920713513248 (change=12.883763214026956 %)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,348 | INFO     | right removable region: 533
[2025-11-23 07:50:17] 2025-11-23 12:49:44,348 | INFO     | sum of square deviations: 48555850580.9796
[2025-11-23 07:50:17] 2025-11-23 12:49:44,354 | INFO     | sum of deviations: 495744061351.3059
[2025-11-23 07:50:17] 2025-11-23 12:49:44,354 | INFO     | mean x: 1763885726.0612245
[2025-11-23 07:50:17] 2025-11-23 12:49:44,355 | INFO     | mean y: 3454044.6270871987
[2025-11-23 07:50:17] 2025-11-23 12:49:44,355 | INFO     | intersect: -18005413334.57447
[2025-11-23 07:50:17] 2025-11-23 12:49:44,355 | INFO     | chi2: 3.1990821357149466
[2025-11-23 07:50:17] 2025-11-23 12:49:44,355 | INFO     | current chi2=3.1990821357149466 (change=43.450081446944104 %)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,356 | INFO     | sum of square deviations: 47217085379.58181
[2025-11-23 07:50:17] 2025-11-23 12:49:44,362 | INFO     | sum of deviations: 447441353932.8343
[2025-11-23 07:50:17] 2025-11-23 12:49:44,362 | INFO     | mean x: 1763885878.559925
[2025-11-23 07:50:17] 2025-11-23 12:49:44,362 | INFO     | mean y: 3459543.8333333335
[2025-11-23 07:50:17] 2025-11-23 12:49:44,362 | INFO     | intersect: -16711580771.364748
[2025-11-23 07:50:17] 2025-11-23 12:49:44,363 | INFO     | chi2: 3.1271391356088287
[2025-11-23 07:50:17] 2025-11-23 12:49:44,363 | INFO     | current chi2=3.1271391356088287 (change=2.248863800742637 %)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,363 | INFO     | left removable region: 20
[2025-11-23 07:50:17] 2025-11-23 12:49:44,364 | INFO     | sum of square deviations: 41862728791.12681
[2025-11-23 07:50:17] 2025-11-23 12:49:44,369 | INFO     | sum of deviations: 635744455026.3987
[2025-11-23 07:50:17] 2025-11-23 12:49:44,369 | INFO     | mean x: 1763885848.0604289
[2025-11-23 07:50:17] 2025-11-23 12:49:44,369 | INFO     | mean y: 3495147.729044834
[2025-11-23 07:50:17] 2025-11-23 12:49:44,369 | INFO     | intersect: -26783593978.71226
[2025-11-23 07:50:17] 2025-11-23 12:49:44,370 | INFO     | chi2: 0.05320096536688812
[2025-11-23 07:50:17] 2025-11-23 12:49:44,370 | INFO     | current memory leak: 15.19 B/s (using 513 data points, chi2=0.05)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,370 | INFO     | could have reported an average CPU frequency of 2437 MHz (22 samples)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | ..............................
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . Timing measurements:
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . get job = 0 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . initial setup = 2 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . payload setup = 8 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . stage-in = 0 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,371 | INFO     | . payload execution = 33164 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,372 | INFO     | . stage-out = 3 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,372 | INFO     | . log creation = 0 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,372 | INFO     | ..............................
[2025-11-23 07:50:17] 2025-11-23 12:49:44,766 | INFO     | 
[2025-11-23 07:50:17] 2025-11-23 12:49:44,766 | INFO     | job summary report
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | --------------------------------------------------
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | PanDA job id: 6895335652
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | task id: 47556149
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | errors: (none)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 07:50:17] 2025-11-23 12:49:44,767 | INFO     | pilot state: finished 
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | transexitcode: 0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | exeerrorcode: 0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | exeerrordiag: 
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | exitcode: 0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | exitmsg: OK
[2025-11-23 07:50:17] 2025-11-23 12:49:44,768 | INFO     | cpuconsumptiontime: 322411 s
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | nevents: 1000
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | neventsw: 0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | pid: 17314
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | pgrp: 17314
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | corecount: 12
[2025-11-23 07:50:17] 2025-11-23 12:49:44,769 | INFO     | event service: False
[2025-11-23 07:50:17] 2025-11-23 12:49:44,770 | INFO     | sizes: {0: 2298583, 1: 2298782, 6: 2299044, 11: 2299072, 33175: 2339868, 33176: 2339867, 33179: 2349045, 33181: 2349101, 33187: 2349347}
[2025-11-23 07:50:17] 2025-11-23 12:49:44,770 | INFO     | --------------------------------------------------
[2025-11-23 07:50:17] 2025-11-23 12:49:44,770 | INFO     | 
[2025-11-23 07:50:17] 2025-11-23 12:49:44,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 07:50:17] 2025-11-23 12:49:44,796 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,797 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,799 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 07:50:17] 2025-11-23 12:49:44,800 | INFO     | job 6895335652 has completed (purged errors)
[2025-11-23 07:50:17] 2025-11-23 12:49:44,800 | INFO     | overall cleanup function is called
[2025-11-23 07:50:17] 2025-11-23 12:49:45,816 | INFO     | --- collectZombieJob: --- 10, [17314]
[2025-11-23 07:50:17] 2025-11-23 12:49:45,816 | INFO     | zombie collector waiting for pid 17314
[2025-11-23 07:50:17] 2025-11-23 12:49:45,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 07:50:17] 2025-11-23 12:49:45,816 | INFO     | collected zombie processes
[2025-11-23 07:50:17] 2025-11-23 12:49:45,816 | INFO     | will attempt to kill all subprocesses of pid=17314
[2025-11-23 07:50:17] 2025-11-23 12:49:45,912 | INFO     | process IDs to be killed: [17314] (in reverse order)
[2025-11-23 07:50:17] 2025-11-23 12:49:45,967 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 07:50:17] 2025-11-23 12:49:45,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 07:50:17] 2025-11-23 12:49:45,971 | INFO     | did not find any defunct processes belonging to 17314
[2025-11-23 07:50:17] 2025-11-23 12:49:45,974 | INFO     | did not find any defunct processes belonging to 17314
[2025-11-23 07:50:17] 2025-11-23 12:49:45,977 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 07:50:17] 2025-11-23 12:49:45,977 | INFO     | ready for new job
[2025-11-23 07:50:17] 2025-11-23 12:49:45,977 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 07:50:17] 2025-11-23 12:49:45,980 | INFO     | ***************************************
[2025-11-23 07:50:17] 2025-11-23 12:49:45,980 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 07:50:17] 2025-11-23 12:49:45,980 | INFO     | ***************************************
[2025-11-23 07:50:17] 2025-11-23 12:49:45,980 | INFO     | 
[2025-11-23 07:50:17] 2025-11-23 12:49:45,980 | INFO     | architecture information:
[2025-11-23 07:50:17] 2025-11-23 12:49:45,981 | INFO     | executing command: cat /etc/os-release
[2025-11-23 07:50:17] 2025-11-23 12:49:45,996 | INFO     | cat /etc/os-release:
[2025-11-23 07:50:17] NAME="CentOS Linux"
[2025-11-23 07:50:17] VERSION="7 (Core)"
[2025-11-23 07:50:17] ID="centos"
[2025-11-23 07:50:17] ID_LIKE="rhel fedora"
[2025-11-23 07:50:17] VERSION_ID="7"
[2025-11-23 07:50:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 07:50:17] ANSI_COLOR="0;31"
[2025-11-23 07:50:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 07:50:17] HOME_URL="https://www.centos.org/"
[2025-11-23 07:50:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 07:50:17] 
[2025-11-23 07:50:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 07:50:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 07:50:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 07:50:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 07:50:17] 
[2025-11-23 07:50:17] 2025-11-23 12:49:45,996 | INFO     | ***************************************
[2025-11-23 07:50:17] 2025-11-23 12:49:46,499 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 07:50:17] 2025-11-23 12:49:46,517 | INFO     | sufficient remaining disk space (28255977472 B)
[2025-11-23 07:50:17] 2025-11-23 12:49:46,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 07:50:17] 2025-11-23 12:49:46,517 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 07:50:17] 2025-11-23 12:49:46,518 | INFO     | update_server=False
[2025-11-23 07:50:17] 2025-11-23 12:49:46,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 07:50:17] 2025-11-23 12:49:46,556 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 07:50:17] 2025-11-23 12:49:46,556 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 07:50:17] 2025-11-23 12:49:46,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:50:17] 2025-11-23 12:49:46,556 | INFO     | will abort loop
[2025-11-23 07:50:17] 2025-11-23 12:49:46,605 | INFO     | all payload control threads have been joined
[2025-11-23 07:50:17] 2025-11-23 12:49:46,639 | INFO     | all job control threads have been joined
[2025-11-23 07:50:17] 2025-11-23 12:49:46,741 | INFO     | all data control threads have been joined
[2025-11-23 07:50:17] 2025-11-23 12:49:47,521 | INFO     | [job] retrieve thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,561 | INFO     | [payload] failed_post thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,561 | INFO     | [job] job monitor thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,586 | INFO     | [payload] validate_post thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,611 | INFO     | [payload] control thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,641 | INFO     | [job] control thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 07:50:17] 2025-11-23 12:49:47,734 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,744 | INFO     | [data] control thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,758 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:47,875 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:48,609 | INFO     | [data] copytool_in thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:48,917 | INFO     | [job] validate thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:49,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 07:50:17] 2025-11-23 12:49:49,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:50:17] 2025-11-23 12:49:49,739 | INFO     | [data] copytool_out thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:50,469 | INFO     | [job] queue monitor thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:49:53,108 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 07:50:17] 2025-11-23 12:50:11,487 | INFO     | [monitor] cgroup control has ended
[2025-11-23 07:50:17] 2025-11-23 12:50:12,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431088326464)>', '<ExcThread(monitor, started 140429911643904)>']
[2025-11-23 07:50:17] 2025-11-23 12:50:17,047 | INFO     | all workflow threads have been joined
[2025-11-23 07:50:17] 2025-11-23 12:50:17,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 07:50:17] 2025-11-23 12:50:17,053 | INFO     | traces error code: 0
[2025-11-23 07:50:17] 2025-11-23 12:50:17,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 07:50:17] 2025-11-23 12:50:17,388 | INFO     | PID=10919 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 07:50:17] 2025-11-23 12:50:17,389 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 07:50:17] 2025-11-23 12:50:17,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 07:50:17] 2025-11-23 12:50:17,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 07:50:17] 2025-11-23 12:50:17,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 07:50:17] 2025-11-23 12:50:17,389 | INFO     | [monitor] control thread has ended
[2025-11-23 07:50:17] 2025-11-23 12:50:17,483 [wrapper] ==== pilot stdout END ====
[2025-11-23 07:50:17] 2025-11-23 12:50:17,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 07:50:17] 2025-11-23 12:50:17,491 [wrapper] pilotpid: 10919
[2025-11-23 07:50:17] 2025-11-23 12:50:17,495 [wrapper] Pilot exit status: 0
[2025-11-23 07:50:17] 2025-11-23 12:50:17,510 [wrapper] pandaids: 6895335652
[2025-11-23 07:50:17] 2025-11-23 12:50:17,548 [wrapper] cleanup supervisor_pilot 16613 10920
[2025-11-23 07:50:17] 2025-11-23 12:50:17,552 [wrapper] Test setup, not cleaning
[2025-11-23 07:50:17] 2025-11-23 12:50:17,556 [wrapper] apfmon messages muted
[2025-11-23 07:50:17] 2025-11-23 12:50:17,560 [wrapper] ==== wrapper stdout END ====
[2025-11-23 07:50:17] 2025-11-23 12:50:17,564 [wrapper] ==== wrapper stderr END ====
[2025-11-23 07:50:17]  *** Error codes and diagnostics ***
[2025-11-23 07:50:17]     "exeErrorCode": 0,
[2025-11-23 07:50:17]     "exeErrorDiag": "",
[2025-11-23 07:50:17]     "pilotErrorCode": 0,
[2025-11-23 07:50:17]     "pilotErrorDiag": "",
[2025-11-23 07:50:17]  *** Listing of results directory ***
[2025-11-23 07:50:17] total 1309360
[2025-11-23 07:50:17] -rwx------ 1 boincer umatlas     36292 Nov 21 23:55 runpilot2-wrapper.sh
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 23:55 queuedata.json
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 23:55 pilot3.tar.gz
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas       100 Nov 22 22:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 07:50:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 22:36 run_atlas
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas       105 Nov 22 22:36 job.xml
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas 408882941 Nov 22 22:36 EVNT.47483658._001065.pool.root.1
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas    590095 Nov 22 22:36 input.tar.gz
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:36 start_atlas.sh
[2025-11-23 07:50:17] drwxrwx--x 2 boincer umatlas      4096 Nov 22 22:36 shared
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas         0 Nov 22 22:36 boinc_lockfile
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 22:36 pandaJob.out
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas        57 Nov 22 22:36 setup.sh.local
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas    989784 Nov 22 22:36 agis_schedconf.cvmfs.json
[2025-11-23 07:50:17] drwx------ 5 boincer umatlas      4096 Nov 22 22:36 pilot3
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas       532 Nov 23 07:39 boinc_task_state.xml
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas      5956 Nov 23 07:48 init_data.xml
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas 914130774 Nov 23 07:49 HITS.47556149._000518.pool.root.1
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas      1062 Nov 23 07:49 memory_monitor_summary.json
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas   1526164 Nov 23 07:49 agis_ddmendpoints.agis.ALL.json
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas   2280879 Nov 23 07:49 log.47556149._000518.job.log.tgz.1
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas        95 Nov 23 07:49 pilot_heartbeat.json
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas      8677 Nov 23 07:49 heartbeat.json
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 07:50 boinc_mmap_file
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas        29 Nov 23 07:50 wrapper_checkpoint.txt
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas       745 Nov 23 07:50 pilotlog.txt
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas   4644875 Nov 23 07:50 log.47556149._000518.job.log.1
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas       353 Nov 23 07:50 output.list
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas       620 Nov 23 07:50 runtime_log
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas   6942720 Nov 23 07:50 result.tar.gz
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas      9345 Nov 23 07:50 runtime_log.err
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas       670 Nov 23 07:50 n3gNDmIqug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGxJKDmIq55hn.diag
[2025-11-23 07:50:17] -rw-r--r-- 1 boincer umatlas     21320 Nov 23 07:50 stderr.txt
[2025-11-23 07:50:17] HITS file was successfully produced:
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas 914130774 Nov 23 07:49 shared/HITS.pool.root.1
[2025-11-23 07:50:17]  *** Contents of shared directory: ***
[2025-11-23 07:50:17] total 1299392
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas 408882941 Nov 22 22:36 ATLAS.root_0
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas    590095 Nov 22 22:36 input.tar.gz
[2025-11-23 07:50:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:36 start_atlas.sh
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas 914130774 Nov 23 07:49 HITS.pool.root.1
[2025-11-23 07:50:17] -rw------- 1 boincer umatlas   6942720 Nov 23 07:50 result.tar.gz
07:50:19 (7221): run_atlas exited; CPU time 311072.423592
07:50:19 (7221): called boinc_finish(0)

</stderr_txt>
]]>

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