Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:43 (3950628): wrapper (7.7.26015): starting
00:00:43 (3950628): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:00:43] Arguments: --nthreads 9
[2025-11-23 00:00:43] Threads: 9
[2025-11-23 00:00:43] Checking for CVMFS
[2025-11-23 00:00:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:00:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:00:47] 2.13.3.0 11066 25284 336404 153197 0 363 30709865 32935936 17082 16776704 0 70625606 99.439 97198728 38203 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:00:47] CVMFS is ok
[2025-11-23 00:00:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:00:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:00:47] Further information can be found at the LHC@home message board.
[2025-11-23 00:00:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:00:47] Checking for apptainer binary...
[2025-11-23 00:00:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:00:47] Running /usr/bin/apptainer --version
[2025-11-23 00:00:48] apptainer version 1.4.4-1.el9
[2025-11-23 00:00:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:00:48] c6-1-24-4.aglt2.org
[2025-11-23 00:00:48] apptainer works
[2025-11-23 00:00:49] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:00:49] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:00:49] Starting ATLAS job with PandaID=6895336343
[2025-11-23 00:00:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 17:37:23]  *** The last 200 lines of the pilot log: ***
[2025-11-24 17:37:23] 2025-11-24 22:36:32,793 | INFO     | monitor loop #5479: job 0:6895336343 is in state 'finished'
[2025-11-24 17:37:23] 2025-11-24 22:36:32,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:37:23] 2025-11-24 22:36:34,428 | INFO     | time since job start (149657s) is within the limit (172800.0s)
[2025-11-24 17:37:23] 2025-11-24 22:36:35,305 | INFO     | monitor loop #5480: job 0:6895336343 is in state 'finished'
[2025-11-24 17:37:23] 2025-11-24 22:36:35,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:37:23] 2025-11-24 22:36:36,536 | INFO     | PID=3965586 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:37:23] 2025-11-24 22:36:36,536 | INFO     | .. there are 27 such processes running
[2025-11-24 17:37:23] 2025-11-24 22:36:37,537 | INFO     | time since job start (149660s) is within the limit (172800.0s)
[2025-11-24 17:37:23] 2025-11-24 22:36:37,838 | INFO     | monitor loop #5481: job 0:6895336343 is in state 'finished'
[2025-11-24 17:37:23] 2025-11-24 22:36:37,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:37:23] 2025-11-24 22:36:39,568 | INFO     | time since job start (149662s) is within the limit (172800.0s)
[2025-11-24 17:37:23] 2025-11-24 22:36:40,352 | INFO     | monitor loop #5482: job 0:6895336343 is in state 'finished'
[2025-11-24 17:37:23] 2025-11-24 22:36:40,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:37:23] 2025-11-24 22:36:41,581 | INFO     | time since job start (149664s) is within the limit (172800.0s)
[2025-11-24 17:37:23] 2025-11-24 22:36:42,166 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 17:37:23] 2025-11-24 22:36:42,204 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2862.3654821428568
[2025-11-24 17:37:23] 2025-11-24 22:36:42,242 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895336343/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 17:37:23] 2025-11-24 22:36:42,242 | INFO     | extracted standard info from prmon json
[2025-11-24 17:37:23] 2025-11-24 22:36:42,242 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 17:37:23] 2025-11-24 22:36:42,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 17:37:23] 2025-11-24 22:36:42,378 | INFO     | fitting pss+swap vs Time
[2025-11-24 17:37:23] 2025-11-24 22:36:42,392 | INFO     | sum of square deviations: 4559910463164.261
[2025-11-24 17:37:23] 2025-11-24 22:36:42,835 | INFO     | sum of deviations: 17466299758211.611
[2025-11-24 17:37:23] 2025-11-24 22:36:42,835 | INFO     | mean x: 1763949029.557959
[2025-11-24 17:37:23] 2025-11-24 22:36:42,835 | INFO     | mean y: 3072771.031020408
[2025-11-24 17:37:23] 2025-11-24 22:36:42,835 | INFO     | intersect: -6753564833.446421
[2025-11-24 17:37:23] 2025-11-24 22:36:42,850 | INFO     | chi2: 25.232895790404335
[2025-11-24 17:37:23] 2025-11-24 22:36:42,861 | INFO     | sum of square deviations: 4532051905632.732
[2025-11-24 17:37:23] 2025-11-24 22:36:42,883 | INFO     | monitor loop #5483: job 0:6895336343 is in state 'finished'
[2025-11-24 17:37:23] 2025-11-24 22:36:42,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 17:37:23] 2025-11-24 22:36:43,192 | INFO     | sum of deviations: 18375393834567.84
[2025-11-24 17:37:23] 2025-11-24 22:36:43,192 | INFO     | mean x: 1763948877.0678937
[2025-11-24 17:37:23] 2025-11-24 22:36:43,192 | INFO     | mean y: 3077746.5128834355
[2025-11-24 17:37:23] 2025-11-24 22:36:43,192 | INFO     | intersect: -7148926686.596303
[2025-11-24 17:37:23] 2025-11-24 22:36:43,195 | INFO     | chi2: 21.778626048477047
[2025-11-24 17:37:23] 2025-11-24 22:36:43,195 | INFO     | current chi2=21.778626048477047 (change=13.689549430315054 %)
[2025-11-24 17:37:23] 2025-11-24 22:36:43,195 | INFO     | right removable region: 2444
[2025-11-24 17:37:23] 2025-11-24 22:36:43,206 | INFO     | sum of square deviations: 4532044645168.733
[2025-11-24 17:37:23] 2025-11-24 22:36:43,616 | INFO     | sum of deviations: 16381182792628.031
[2025-11-24 17:37:23] 2025-11-24 22:36:43,616 | INFO     | mean x: 1763949182.0678937
[2025-11-24 17:37:23] 2025-11-24 22:36:43,616 | INFO     | mean y: 3078709.5419222903
[2025-11-24 17:37:23] 2025-11-24 22:36:43,617 | INFO     | intersect: -6372757419.7787
[2025-11-24 17:37:23] 2025-11-24 22:36:43,627 | INFO     | time since job start (149666s) is within the limit (172800.0s)
[2025-11-24 17:37:23] 2025-11-24 22:36:43,630 | INFO     | chi2: 20.80479323311152
[2025-11-24 17:37:23] 2025-11-24 22:36:43,630 | INFO     | current chi2=20.80479323311152 (change=17.548927376685597 %)
[2025-11-24 17:37:23] 2025-11-24 22:36:43,630 | INFO     | left removable region: 10
[2025-11-24 17:37:23] 2025-11-24 22:36:43,639 | INFO     | sum of square deviations: 4471148417026.613
[2025-11-24 17:37:23] 2025-11-24 22:36:44,382 | INFO     | sum of deviations: 16527172393242.648
[2025-11-24 17:37:23] 2025-11-24 22:36:44,387 | INFO     | mean x: 1763949151.5903862
[2025-11-24 17:37:23] 2025-11-24 22:36:44,388 | INFO     | mean y: 3089842.9334428925
[2025-11-24 17:37:23] 2025-11-24 22:36:44,388 | INFO     | intersect: -6517179448.560061
[2025-11-24 17:37:23] 2025-11-24 22:36:44,395 | INFO     | chi2: 13.512382115045448
[2025-11-24 17:37:23] 2025-11-24 22:36:44,396 | INFO     | current memory leak: 3.70 B/s (using 2434 data points, chi2=13.51)
[2025-11-24 17:37:23] 2025-11-24 22:36:44,398 | INFO     | could have reported an average CPU frequency of 2926 MHz (58 samples)
[2025-11-24 17:37:23] 2025-11-24 22:36:44,402 | INFO     | ..............................
[2025-11-24 17:37:23] 2025-11-24 22:36:44,402 | INFO     | . Timing measurements:
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . get job = 0 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . initial setup = 7 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . payload setup = 66 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . stage-in = 0 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . payload execution = 149463 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . stage-out = 9 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | . log creation = 2 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,403 | INFO     | ..............................
[2025-11-24 17:37:23] 2025-11-24 22:36:44,561 | INFO     | 
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | job summary report
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | --------------------------------------------------
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | PanDA job id: 6895336343
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | task id: 47556137
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | errors: (none)
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | pilot state: finished 
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | transexitcode: 0
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | exeerrorcode: 0
[2025-11-24 17:37:23] 2025-11-24 22:36:44,562 | INFO     | exeerrordiag: 
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | exitcode: 0
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | exitmsg: OK
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | cpuconsumptiontime: 238420 s
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | nevents: 1000
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | neventsw: 0
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | pid: 3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | pgrp: 3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | corecount: 9
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | event service: False
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | sizes: {0: 2298529, 1: 2298670, 2: 2298784, 13: 2298812, 24: 2298868, 35: 2298896, 42: 2299314, 46: 2299370, 149536: 2367942, 149545: 2377727, 149549: 2377783, 149
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | --------------------------------------------------
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | 
[2025-11-24 17:37:23] 2025-11-24 22:36:44,563 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 17:37:23] 2025-11-24 22:36:44,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | job 6895336343 has completed (purged errors)
[2025-11-24 17:37:23] 2025-11-24 22:36:44,586 | INFO     | overall cleanup function is called
[2025-11-24 17:37:23] 2025-11-24 22:36:45,614 | INFO     | --- collectZombieJob: --- 10, [3997796]
[2025-11-24 17:37:23] 2025-11-24 22:36:45,615 | INFO     | zombie collector waiting for pid 3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:45,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 17:37:23] 2025-11-24 22:36:45,615 | INFO     | collected zombie processes
[2025-11-24 17:37:23] 2025-11-24 22:36:45,615 | INFO     | will attempt to kill all subprocesses of pid=3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:47,436 | INFO     | process IDs to be killed: [3997796] (in reverse order)
[2025-11-24 17:37:23] 2025-11-24 22:36:47,662 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 17:37:23] 2025-11-24 22:36:47,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 17:37:23] 2025-11-24 22:36:47,696 | INFO     | did not find any defunct processes belonging to 3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:47,722 | INFO     | did not find any defunct processes belonging to 3997796
[2025-11-24 17:37:23] 2025-11-24 22:36:47,726 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 17:37:23] 2025-11-24 22:36:47,727 | INFO     | ready for new job
[2025-11-24 17:37:23] 2025-11-24 22:36:47,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 17:37:23] 2025-11-24 22:36:47,743 | INFO     | ***************************************
[2025-11-24 17:37:23] 2025-11-24 22:36:47,743 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 17:37:23] 2025-11-24 22:36:47,743 | INFO     | ***************************************
[2025-11-24 17:37:23] 2025-11-24 22:36:47,743 | INFO     | 
[2025-11-24 17:37:23] 2025-11-24 22:36:47,751 | INFO     | architecture information:
[2025-11-24 17:37:23] 2025-11-24 22:36:47,759 | INFO     | executing command: cat /etc/os-release
[2025-11-24 17:37:23] 2025-11-24 22:36:47,940 | INFO     | cat /etc/os-release:
[2025-11-24 17:37:23] NAME="CentOS Linux"
[2025-11-24 17:37:23] VERSION="7 (Core)"
[2025-11-24 17:37:23] ID="centos"
[2025-11-24 17:37:23] ID_LIKE="rhel fedora"
[2025-11-24 17:37:23] VERSION_ID="7"
[2025-11-24 17:37:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 17:37:23] ANSI_COLOR="0;31"
[2025-11-24 17:37:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 17:37:23] HOME_URL="https://www.centos.org/"
[2025-11-24 17:37:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 17:37:23] 
[2025-11-24 17:37:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 17:37:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 17:37:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 17:37:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 17:37:23] 
[2025-11-24 17:37:23] 2025-11-24 22:36:47,940 | INFO     | ***************************************
[2025-11-24 17:37:23] 2025-11-24 22:36:48,447 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 17:37:23] 2025-11-24 22:36:48,575 | INFO     | sufficient remaining disk space (71423754240 B)
[2025-11-24 17:37:23] 2025-11-24 22:36:48,575 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 17:37:23] 2025-11-24 22:36:48,575 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 17:37:23] 2025-11-24 22:36:48,575 | INFO     | update_server=False
[2025-11-24 17:37:23] 2025-11-24 22:36:48,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 17:37:23] 2025-11-24 22:36:48,855 | INFO     | all payload control threads have been joined
[2025-11-24 17:37:23] 2025-11-24 22:36:48,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 17:37:23] 2025-11-24 22:36:48,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:37:23] 2025-11-24 22:36:48,943 | INFO     | aborting loop
[2025-11-24 17:37:23] 2025-11-24 22:36:49,047 | INFO     | all data control threads have been joined
[2025-11-24 17:37:23] 2025-11-24 22:36:49,581 | INFO     | [job] retrieve thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:49,634 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 17:37:23] 2025-11-24 22:36:49,651 | INFO     | all job control threads have been joined
[2025-11-24 17:37:23] 2025-11-24 22:36:49,866 | INFO     | [payload] control thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:49,902 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:49,948 | INFO     | [job] job monitor thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,016 | INFO     | [payload] validate_post thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,019 | INFO     | [job] validate thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,020 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,053 | INFO     | [data] control thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,144 | INFO     | [data] copytool_in thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,411 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,616 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,648 | INFO     | [job] queue monitor thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,657 | INFO     | [job] control thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,682 | INFO     | [payload] failed_post thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:50,921 | INFO     | [data] copytool_out thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:51,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 17:37:23] 2025-11-24 22:36:55,652 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 17:37:23] 2025-11-24 22:36:56,467 | INFO     | [monitor] cgroup control has ended
[2025-11-24 17:37:23] 2025-11-24 22:36:57,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054964471616)>', '<ExcThread(monitor, started 140054169114368)>']
[2025-11-24 17:37:23] 2025-11-24 22:37:02,074 | INFO     | all workflow threads have been joined
[2025-11-24 17:37:23] 2025-11-24 22:37:02,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 17:37:23] 2025-11-24 22:37:02,075 | INFO     | traces error code: 0
[2025-11-24 17:37:23] 2025-11-24 22:37:02,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 17:37:23] 2025-11-24 22:37:18,706 | INFO     | PID=3965586 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 17:37:23] 2025-11-24 22:37:18,706 | INFO     | .. there are 27 such processes running
[2025-11-24 17:37:23] 2025-11-24 22:37:18,707 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 17:37:23] 2025-11-24 22:37:18,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 17:37:23] 2025-11-24 22:37:18,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 17:37:23] 2025-11-24 22:37:18,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 17:37:23] 2025-11-24 22:37:18,707 | INFO     | [monitor] control thread has ended
[2025-11-24 17:37:23] 2025-11-24 22:37:20,489 [wrapper] ==== pilot stdout END ====
[2025-11-24 17:37:23] 2025-11-24 22:37:20,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 17:37:23] 2025-11-24 22:37:20,622 [wrapper] pilotpid: 3965586
[2025-11-24 17:37:23] 2025-11-24 22:37:20,680 [wrapper] Pilot exit status: 0
[2025-11-24 17:37:23] 2025-11-24 22:37:20,956 [wrapper] pandaids: 6895336343
[2025-11-24 17:37:23] 2025-11-24 22:37:22,307 [wrapper] cleanup supervisor_pilot 2737267 3965587
[2025-11-24 17:37:23] 2025-11-24 22:37:22,324 [wrapper] Test setup, not cleaning
[2025-11-24 17:37:23] 2025-11-24 22:37:22,352 [wrapper] apfmon messages muted
[2025-11-24 17:37:23] 2025-11-24 22:37:22,379 [wrapper] ==== wrapper stdout END ====
[2025-11-24 17:37:23] 2025-11-24 22:37:22,394 [wrapper] ==== wrapper stderr END ====
[2025-11-24 17:37:23]  *** Error codes and diagnostics ***
[2025-11-24 17:37:23]     "exeErrorCode": 0,
[2025-11-24 17:37:23]     "exeErrorDiag": "",
[2025-11-24 17:37:23]     "pilotErrorCode": 0,
[2025-11-24 17:37:23]     "pilotErrorDiag": "",
[2025-11-24 17:37:23]  *** Listing of results directory ***
[2025-11-24 17:37:23] total 1342112
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:14 queuedata.json
[2025-11-24 17:37:23] -rwx------. 1 boincer umatlas     36292 Nov 22 00:15 runpilot2-wrapper.sh
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 17:37:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:00 run_atlas
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:00 job.xml
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas 412569906 Nov 23 00:00 EVNT.47483658._000275.pool.root.1
[2025-11-24 17:37:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:00 shared
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:00 input.tar.gz
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:00 boinc_lockfile
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:00 pandaJob.out
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas        57 Nov 23 00:00 setup.sh.local
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas    989784 Nov 23 00:02 agis_schedconf.cvmfs.json
[2025-11-24 17:37:23] drwx------. 5 boincer umatlas      4096 Nov 23 00:02 pilot3
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas       533 Nov 24 17:05 boinc_task_state.xml
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 17:31 init_data.xml
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas 921833380 Nov 24 17:33 HITS.47556137._002713.pool.root.1
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas      1059 Nov 24 17:35 memory_monitor_summary.json
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas   1516227 Nov 24 17:36 agis_ddmendpoints.agis.ALL.json
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas   2983011 Nov 24 17:36 log.47556137._002713.job.log.tgz.1
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas      7952 Nov 24 17:36 heartbeat.json
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas        95 Nov 24 17:37 pilot_heartbeat.json
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas       823 Nov 24 17:37 pilotlog.txt
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 17:37 boinc_mmap_file
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas        29 Nov 24 17:37 wrapper_checkpoint.txt
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas  15020513 Nov 24 17:37 log.47556137._002713.job.log.1
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas       353 Nov 24 17:37 output.list
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas       620 Nov 24 17:37 runtime_log
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas  18022400 Nov 24 17:37 result.tar.gz
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas       664 Nov 24 17:37 ZlZKDmh9ug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6xHKDmFI5Aun.diag
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 17:37 runtime_log.err
[2025-11-24 17:37:23] -rw-r--r--. 1 boincer umatlas     21903 Nov 24 17:37 stderr.txt
[2025-11-24 17:37:23] HITS file was successfully produced:
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas 921833380 Nov 24 17:33 shared/HITS.pool.root.1
[2025-11-24 17:37:23]  *** Contents of shared directory: ***
[2025-11-24 17:37:23] total 1321336
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas 412569906 Nov 23 00:00 ATLAS.root_0
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:00 input.tar.gz
[2025-11-24 17:37:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas 921833380 Nov 24 17:33 HITS.pool.root.1
[2025-11-24 17:37:23] -rw-------. 1 boincer umatlas  18022400 Nov 24 17:37 result.tar.gz
17:37:24 (3950628): run_atlas exited; CPU time 239914.093097
17:37:24 (3950628): called boinc_finish(0)

</stderr_txt>
]]>

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