Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:45 (2577377): wrapper (7.7.26015): starting
00:00:45 (2577377): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:00:45] Arguments: --nthreads 9
[2025-11-23 00:00:45] Threads: 9
[2025-11-23 00:00:45] Checking for CVMFS
[2025-11-23 00:00:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:00:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:00:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:00:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:00:48] 2.13.3.0 5206 2370 239420 153197 2 794 29765545 40960000 49882 16776704 0 20814942 99.824 9024750 29452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:00:48] CVMFS is ok
[2025-11-23 00:00:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:00:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:00:48] Further information can be found at the LHC@home message board.
[2025-11-23 00:00:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:00:48] Checking for apptainer binary...
[2025-11-23 00:00:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:00:48] Running /usr/bin/apptainer --version
[2025-11-23 00:00:48] apptainer version 1.4.4-1.el9
[2025-11-23 00:00:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:00:49] lc-12-9.aglt2.org
[2025-11-23 00:00:49] apptainer works
[2025-11-23 00:00:49] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:00:49] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:00:49] Starting ATLAS job with PandaID=6895336087
[2025-11-23 00:00:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:42:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:42:50] 2025-11-24 11:42:14,834 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 06:42:50] 2025-11-24 11:42:14,841 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2700.0007708333337
[2025-11-24 06:42:50] 2025-11-24 11:42:14,874 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895336087/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:42:50] 2025-11-24 11:42:14,875 | INFO     | extracted standard info from prmon json
[2025-11-24 06:42:50] 2025-11-24 11:42:14,875 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:42:50] 2025-11-24 11:42:14,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:42:50] 2025-11-24 11:42:14,906 | INFO     | fitting pss+swap vs Time
[2025-11-24 06:42:50] 2025-11-24 11:42:14,908 | INFO     | sum of square deviations: 1832511567490.6338
[2025-11-24 06:42:50] 2025-11-24 11:42:14,985 | INFO     | sum of deviations: 9636213137960.777
[2025-11-24 06:42:50] 2025-11-24 11:42:14,985 | INFO     | mean x: 1763929371.068031
[2025-11-24 06:42:50] 2025-11-24 11:42:14,985 | INFO     | mean y: 3032315.5221238937
[2025-11-24 06:42:50] 2025-11-24 11:42:14,986 | INFO     | intersect: -9272543174.130293
[2025-11-24 06:42:50] 2025-11-24 11:42:14,987 | INFO     | chi2: 13.54091518832403
[2025-11-24 06:42:50] 2025-11-24 11:42:14,989 | INFO     | sum of square deviations: 1817351241391.8042
[2025-11-24 06:42:50] 2025-11-24 11:42:15,104 | INFO     | sum of deviations: 10309099792950.18
[2025-11-24 06:42:50] 2025-11-24 11:42:15,104 | INFO     | mean x: 1763929218.5779257
[2025-11-24 06:42:50] 2025-11-24 11:42:15,104 | INFO     | mean y: 3039083.436494731
[2025-11-24 06:42:50] 2025-11-24 11:42:15,104 | INFO     | intersect: -10003019144.52278
[2025-11-24 06:42:50] 2025-11-24 11:42:15,109 | INFO     | chi2: 10.095543576314654
[2025-11-24 06:42:50] 2025-11-24 11:42:15,109 | INFO     | current chi2=10.095543576314654 (change=25.444156204303148 %)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,116 | INFO     | sum of square deviations: 1802274777330.14
[2025-11-24 06:42:50] 2025-11-24 11:42:15,126 | INFO     | monitor loop #5163: job 0:6895336087 is in state 'finished'
[2025-11-24 06:42:50] 2025-11-24 11:42:15,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,142 | INFO     | time since job start (110421s) is within the limit (172800.0s)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,245 | INFO     | sum of deviations: 10803629239218.408
[2025-11-24 06:42:50] 2025-11-24 11:42:15,245 | INFO     | mean x: 1763929066.0878754
[2025-11-24 06:42:50] 2025-11-24 11:42:15,245 | INFO     | mean y: 3044083.060622914
[2025-11-24 06:42:50] 2025-11-24 11:42:15,245 | INFO     | intersect: -10570724064.83782
[2025-11-24 06:42:50] 2025-11-24 11:42:15,247 | INFO     | chi2: 7.93271847916768
[2025-11-24 06:42:50] 2025-11-24 11:42:15,248 | INFO     | current chi2=7.93271847916768 (change=21.423562592718817 %)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,248 | INFO     | right removable region: 1797
[2025-11-24 06:42:50] 2025-11-24 11:42:15,254 | INFO     | sum of square deviations: 1817347306281.8035
[2025-11-24 06:42:50] 2025-11-24 11:42:15,393 | INFO     | sum of deviations: 8886291111853.0
[2025-11-24 06:42:50] 2025-11-24 11:42:15,393 | INFO     | mean x: 1763929523.5779257
[2025-11-24 06:42:50] 2025-11-24 11:42:15,394 | INFO     | mean y: 3039856.352190793
[2025-11-24 06:42:50] 2025-11-24 11:42:15,394 | INFO     | intersect: -8622054088.6106
[2025-11-24 06:42:50] 2025-11-24 11:42:15,408 | INFO     | chi2: 9.527926504150791
[2025-11-24 06:42:50] 2025-11-24 11:42:15,408 | INFO     | current chi2=9.527926504150791 (change=29.636022590508006 %)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,411 | INFO     | sum of square deviations: 1802266907110.139
[2025-11-24 06:42:50] 2025-11-24 11:42:15,580 | INFO     | sum of deviations: 8292929984387.913
[2025-11-24 06:42:50] 2025-11-24 11:42:15,581 | INFO     | mean x: 1763929676.0878754
[2025-11-24 06:42:50] 2025-11-24 11:42:15,581 | INFO     | mean y: 3045855.7157953284
[2025-11-24 06:42:50] 2025-11-24 11:42:15,581 | INFO     | intersect: -8113479639.742827
[2025-11-24 06:42:50] 2025-11-24 11:42:15,583 | INFO     | chi2: 7.154662337985521
[2025-11-24 06:42:50] 2025-11-24 11:42:15,583 | INFO     | current chi2=7.154662337985521 (change=24.908506222538236 %)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,583 | INFO     | left removable region: 20
[2025-11-24 06:42:50] 2025-11-24 11:42:15,585 | INFO     | sum of square deviations: 1739854297822.516
[2025-11-24 06:42:50] 2025-11-24 11:42:15,644 | INFO     | sum of deviations: 9033398825496.47
[2025-11-24 06:42:50] 2025-11-24 11:42:15,645 | INFO     | mean x: 1763929645.5998874
[2025-11-24 06:42:50] 2025-11-24 11:42:15,645 | INFO     | mean y: 3063186.4085537423
[2025-11-24 06:42:50] 2025-11-24 11:42:15,645 | INFO     | intersect: -9155335886.871717
[2025-11-24 06:42:50] 2025-11-24 11:42:15,647 | INFO     | chi2: 0.6643420320146278
[2025-11-24 06:42:50] 2025-11-24 11:42:15,647 | INFO     | current memory leak: 5.19 B/s (using 1777 data points, chi2=0.66)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | could have reported an average CPU frequency of 2700 MHz (63 samples)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | ..............................
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | . Timing measurements:
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | . get job = 0 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | . initial setup = 4 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,649 | INFO     | . payload setup = 37 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,650 | INFO     | . stage-in = 0 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,650 | INFO     | . payload execution = 110286 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,650 | INFO     | . stage-out = 5 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,650 | INFO     | . log creation = 1 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,650 | INFO     | ..............................
[2025-11-24 06:42:50] 2025-11-24 11:42:15,796 | INFO     | 
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | job summary report
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | --------------------------------------------------
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | PanDA job id: 6895336087
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | task id: 47556137
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | errors: (none)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | pilot state: finished 
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | transexitcode: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | exeerrorcode: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | exeerrordiag: 
[2025-11-24 06:42:50] 2025-11-24 11:42:15,797 | INFO     | exitcode: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | exitmsg: OK
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | cpuconsumptiontime: 266886 s
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | nevents: 1000
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | neventsw: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | pid: 2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | pgrp: 2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | corecount: 9
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | event service: False
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | sizes: {0: 2298636, 1: 2298835, 2: 2298863, 13: 2298863, 24: 2298919, 29: 2299209, 36: 2299365, 110328: 2372922, 110335: 2382707, 110338: 2382763, 110355: 2383009}
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | --------------------------------------------------
[2025-11-24 06:42:50] 2025-11-24 11:42:15,798 | INFO     | 
[2025-11-24 06:42:50] 2025-11-24 11:42:15,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 06:42:50] 2025-11-24 11:42:15,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:42:50] 2025-11-24 11:42:15,940 | INFO     | job 6895336087 has completed (purged errors)
[2025-11-24 06:42:50] 2025-11-24 11:42:15,940 | INFO     | overall cleanup function is called
[2025-11-24 06:42:50] 2025-11-24 11:42:16,967 | INFO     | --- collectZombieJob: --- 10, [2630963]
[2025-11-24 06:42:50] 2025-11-24 11:42:16,967 | INFO     | zombie collector waiting for pid 2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:16,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:42:50] 2025-11-24 11:42:16,967 | INFO     | collected zombie processes
[2025-11-24 06:42:50] 2025-11-24 11:42:16,967 | INFO     | will attempt to kill all subprocesses of pid=2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:18,207 | INFO     | process IDs to be killed: [2630963] (in reverse order)
[2025-11-24 06:42:50] 2025-11-24 11:42:18,500 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:42:50] 2025-11-24 11:42:18,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:42:50] 2025-11-24 11:42:18,556 | INFO     | did not find any defunct processes belonging to 2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:18,582 | INFO     | did not find any defunct processes belonging to 2630963
[2025-11-24 06:42:50] 2025-11-24 11:42:18,600 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:42:50] 2025-11-24 11:42:18,600 | INFO     | ready for new job
[2025-11-24 06:42:50] 2025-11-24 11:42:18,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:42:50] 2025-11-24 11:42:18,621 | INFO     | ***************************************
[2025-11-24 06:42:50] 2025-11-24 11:42:18,639 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:42:50] 2025-11-24 11:42:18,639 | INFO     | ***************************************
[2025-11-24 06:42:50] 2025-11-24 11:42:18,639 | INFO     | 
[2025-11-24 06:42:50] 2025-11-24 11:42:18,647 | INFO     | architecture information:
[2025-11-24 06:42:50] 2025-11-24 11:42:18,670 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:42:50] 2025-11-24 11:42:18,689 | INFO     | cat /etc/os-release:
[2025-11-24 06:42:50] NAME="CentOS Linux"
[2025-11-24 06:42:50] VERSION="7 (Core)"
[2025-11-24 06:42:50] ID="centos"
[2025-11-24 06:42:50] ID_LIKE="rhel fedora"
[2025-11-24 06:42:50] VERSION_ID="7"
[2025-11-24 06:42:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:42:50] ANSI_COLOR="0;31"
[2025-11-24 06:42:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:42:50] HOME_URL="https://www.centos.org/"
[2025-11-24 06:42:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:42:50] 
[2025-11-24 06:42:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:42:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:42:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:42:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:42:50] 
[2025-11-24 06:42:50] 2025-11-24 11:42:18,690 | INFO     | ***************************************
[2025-11-24 06:42:50] 2025-11-24 11:42:19,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 06:42:50] 2025-11-24 11:42:19,225 | INFO     | sufficient remaining disk space (414212685824 B)
[2025-11-24 06:42:50] 2025-11-24 11:42:19,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:42:50] 2025-11-24 11:42:19,226 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:42:50] 2025-11-24 11:42:19,226 | INFO     | update_server=False
[2025-11-24 06:42:50] 2025-11-24 11:42:19,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:42:50] 2025-11-24 11:42:19,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:42:50] 2025-11-24 11:42:19,227 | INFO     | aborting loop
[2025-11-24 06:42:50] 2025-11-24 11:42:19,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:42:50] 2025-11-24 11:42:19,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:42:50] 2025-11-24 11:42:20,087 | INFO     | all data control threads have been joined
[2025-11-24 06:42:50] 2025-11-24 11:42:20,116 | INFO     | all job control threads have been joined
[2025-11-24 06:42:50] 2025-11-24 11:42:20,233 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,234 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,447 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,461 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,484 | INFO     | all payload control threads have been joined
[2025-11-24 06:42:50] 2025-11-24 11:42:20,490 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,556 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:20,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:42:50] 2025-11-24 11:42:20,826 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,093 | INFO     | [data] control thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,122 | INFO     | [job] control thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,215 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,274 | INFO     | [job] validate thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,390 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,491 | INFO     | [payload] control thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,596 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:21,813 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:23,240 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:42:50] 2025-11-24 11:42:29,619 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:42:50] 2025-11-24 11:42:30,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062423172928)>', '<ExcThread(monitor, started 140061534304000)>']
[2025-11-24 06:42:50] 2025-11-24 11:42:35,076 | INFO     | all workflow threads have been joined
[2025-11-24 06:42:50] 2025-11-24 11:42:35,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:42:50] 2025-11-24 11:42:35,076 | INFO     | traces error code: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:35,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:42:50] 2025-11-24 11:42:49,393 | INFO     | PID=2590066 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | INFO     | .. there are 83 such processes running
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:42:50] 2025-11-24 11:42:49,394 | INFO     | [monitor] control thread has ended
[2025-11-24 06:42:50] 2025-11-24 11:42:49,650 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:42:50] 2025-11-24 11:42:49,653 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:42:50] 2025-11-24 11:42:49,655 [wrapper] pilotpid: 2590066
[2025-11-24 06:42:50] 2025-11-24 11:42:49,658 [wrapper] Pilot exit status: 0
[2025-11-24 06:42:50] 2025-11-24 11:42:49,695 [wrapper] pandaids: 6895336087
[2025-11-24 06:42:50] 2025-11-24 11:42:49,850 [wrapper] cleanup supervisor_pilot 3824248 2590067
[2025-11-24 06:42:50] 2025-11-24 11:42:49,853 [wrapper] Test setup, not cleaning
[2025-11-24 06:42:50] 2025-11-24 11:42:49,862 [wrapper] apfmon messages muted
[2025-11-24 06:42:50] 2025-11-24 11:42:49,873 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:42:50] 2025-11-24 11:42:49,875 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:42:50]  *** Error codes and diagnostics ***
[2025-11-24 06:42:50]     "exeErrorCode": 0,
[2025-11-24 06:42:50]     "exeErrorDiag": "",
[2025-11-24 06:42:50]     "pilotErrorCode": 0,
[2025-11-24 06:42:50]     "pilotErrorDiag": "",
[2025-11-24 06:42:50]  *** Listing of results directory ***
[2025-11-24 06:42:50] total 1346960
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-24 06:42:50] -rwx------. 1 boincer umatlas     36292 Nov 22 00:12 runpilot2-wrapper.sh
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:42:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:00 run_atlas
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:00 job.xml
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas 411008770 Nov 23 00:00 EVNT.47483658._000269.pool.root.1
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 06:42:50] drwxrwx--x. 2 boincer umatlas        68 Nov 23 00:00 shared
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:00 input.tar.gz
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:00 boinc_lockfile
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:00 pandaJob.out
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas    989784 Nov 23 00:01 agis_schedconf.cvmfs.json
[2025-11-24 06:42:50] drwx------. 5 boincer umatlas      4096 Nov 23 00:01 pilot3
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas       533 Nov 24 06:27 boinc_task_state.xml
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas      6800 Nov 24 06:36 init_data.xml
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas 934990391 Nov 24 06:40 HITS.47556137._002653.pool.root.1
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas      1059 Nov 24 06:41 memory_monitor_summary.json
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas        95 Nov 24 06:41 pilot_heartbeat.json
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas   1516227 Nov 24 06:41 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas   2706102 Nov 24 06:41 log.47556137._002653.job.log.tgz.1
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas      8622 Nov 24 06:42 heartbeat.json
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 06:42 boinc_mmap_file
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas        29 Nov 24 06:42 wrapper_checkpoint.txt
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas       823 Nov 24 06:42 pilotlog.txt
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas  11985649 Nov 24 06:42 log.47556137._002653.job.log.1
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas       353 Nov 24 06:42 output.list
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas       620 Nov 24 06:42 runtime_log
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas  14714880 Nov 24 06:42 result.tar.gz
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas      8814 Nov 24 06:42 runtime_log.err
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas       662 Nov 24 06:42 qivLDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmayJKDmvtKnVo.diag
[2025-11-24 06:42:50] -rw-r--r--. 1 boincer umatlas     21375 Nov 24 06:42 stderr.txt
[2025-11-24 06:42:50] HITS file was successfully produced:
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas 934990391 Nov 24 06:40 shared/HITS.pool.root.1
[2025-11-24 06:42:50]  *** Contents of shared directory: ***
[2025-11-24 06:42:50] total 1329424
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas 411008770 Nov 23 00:00 ATLAS.root_0
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 06:42:50] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:00 input.tar.gz
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas 934990391 Nov 24 06:40 HITS.pool.root.1
[2025-11-24 06:42:50] -rw-------. 1 boincer umatlas  14714880 Nov 24 06:42 result.tar.gz
06:42:51 (2577377): run_atlas exited; CPU time 272760.556914
06:42:51 (2577377): called boinc_finish(0)

</stderr_txt>
]]>

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