Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:28:01 (850): wrapper (7.7.26015): starting
22:28:01 (850): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 22:28:01] Arguments: --nthreads 12
[2025-11-22 22:28:01] Threads: 12
[2025-11-22 22:28:01] Checking for CVMFS
[2025-11-22 22:28:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:28:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:28:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:28:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:28:02] 2.11.2.0 2947 282775 90876 153195 0 82 10940166 20275201 1 130560 1 127481542 99.971 16266044 12696 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 22:28:02] CVMFS is ok
[2025-11-22 22:28:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:28:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:28:03] Further information can be found at the LHC@home message board.
[2025-11-22 22:28:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:28:03] Checking for apptainer binary...
[2025-11-22 22:28:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:28:03] Running /usr/bin/apptainer --version
[2025-11-22 22:28:03] apptainer version 1.3.2-1.el7
[2025-11-22 22:28:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:28:05] c-205-18.aglt2.org
[2025-11-22 22:28:05] apptainer works
[2025-11-22 22:28:05] Set ATHENA_PROC_NUMBER=12
[2025-11-22 22:28:05] Set ATHENA_CORE_NUMBER=12
[2025-11-22 22:28:05] Starting ATLAS job with PandaID=6895336051
[2025-11-22 22:28:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:48:20 (2873): wrapper (7.7.26015): starting
03:48:20 (2873): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 03:48:20] Arguments: --nthreads 12
[2025-11-23 03:48:20] Threads: 12
[2025-11-23 03:48:20] This job has been restarted, cleaning up previous attempt
[2025-11-23 03:48:20] Checking for CVMFS
[2025-11-23 03:48:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:48:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:48:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:48:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:48:21] 2.11.2.0 2947 283095 92564 153202 0 56 11338140 20275200 1 130560 1 127624040 99.971 16275362 12702 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 03:48:21] CVMFS is ok
[2025-11-23 03:48:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:48:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:48:21] Further information can be found at the LHC@home message board.
[2025-11-23 03:48:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:48:21] Checking for apptainer binary...
[2025-11-23 03:48:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:48:21] Running /usr/bin/apptainer --version
[2025-11-23 03:48:21] apptainer version 1.3.2-1.el7
[2025-11-23 03:48:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:48:22] c-205-18.aglt2.org
[2025-11-23 03:48:22] apptainer works
[2025-11-23 03:48:22] Set ATHENA_PROC_NUMBER=12
[2025-11-23 03:48:22] Set ATHENA_CORE_NUMBER=12
[2025-11-23 03:48:22] Starting ATLAS job with PandaID=6895336051
[2025-11-23 03:48:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:10:26]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:10:26] 2025-11-23 16:09:42,838 | INFO     | monitor loop #1981: job 0:6895336051 is in state 'finished'
[2025-11-23 11:10:26] 2025-11-23 16:09:42,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,181 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 11:10:26] 2025-11-23 16:09:43,185 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-23 11:10:26] 2025-11-23 16:09:43,188 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895336051/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,188 | INFO     | extracted standard info from prmon json
[2025-11-23 11:10:26] 2025-11-23 16:09:43,189 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:10:26] 2025-11-23 16:09:43,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:10:26] 2025-11-23 16:09:43,195 | INFO     | fitting pss+swap vs Time
[2025-11-23 11:10:26] 2025-11-23 16:09:43,196 | INFO     | sum of square deviations: 25347967447.07138
[2025-11-23 11:10:26] 2025-11-23 16:09:43,200 | INFO     | sum of deviations: 386776275255.071
[2025-11-23 11:10:26] 2025-11-23 16:09:43,200 | INFO     | mean x: 1763900953.7857144
[2025-11-23 11:10:26] 2025-11-23 16:09:43,200 | INFO     | mean y: 3431902.0760368663
[2025-11-23 11:10:26] 2025-11-23 16:09:43,200 | INFO     | intersect: -26911350999.104027
[2025-11-23 11:10:26] 2025-11-23 16:09:43,201 | INFO     | chi2: 6.180214101375777
[2025-11-23 11:10:26] 2025-11-23 16:09:43,201 | INFO     | sum of square deviations: 24481970424.158787
[2025-11-23 11:10:26] 2025-11-23 16:09:43,205 | INFO     | sum of deviations: 557037169293.4896
[2025-11-23 11:10:26] 2025-11-23 16:09:43,205 | INFO     | mean x: 1763900801.2890444
[2025-11-23 11:10:26] 2025-11-23 16:09:43,205 | INFO     | mean y: 3461852.6573426574
[2025-11-23 11:10:26] 2025-11-23 16:09:43,205 | INFO     | intersect: -40130493553.76614
[2025-11-23 11:10:26] 2025-11-23 16:09:43,206 | INFO     | chi2: 3.0397964471609016
[2025-11-23 11:10:26] 2025-11-23 16:09:43,206 | INFO     | current chi2=3.0397964471609016 (change=50.81405923325193 %)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,207 | INFO     | sum of square deviations: 23635927263.73579
[2025-11-23 11:10:26] 2025-11-23 16:09:43,210 | INFO     | sum of deviations: 599457577281.8492
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | mean x: 1763900648.7924528
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | mean y: 3469455.077830189
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | intersect: -44732816864.15332
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | chi2: 2.6093977503007784
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | current chi2=2.6093977503007784 (change=14.158799917741383 %)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,211 | INFO     | right removable region: 423
[2025-11-23 11:10:26] 2025-11-23 16:09:43,212 | INFO     | sum of square deviations: 24481894784.15879
[2025-11-23 11:10:26] 2025-11-23 16:09:43,216 | INFO     | sum of deviations: 237819174421.5615
[2025-11-23 11:10:26] 2025-11-23 16:09:43,216 | INFO     | mean x: 1763901106.2890444
[2025-11-23 11:10:26] 2025-11-23 16:09:43,216 | INFO     | mean y: 3458059.9067599066
[2025-11-23 11:10:26] 2025-11-23 16:09:43,216 | INFO     | intersect: -17131224878.538578
[2025-11-23 11:10:26] 2025-11-23 16:09:43,217 | INFO     | chi2: 3.7358752369204615
[2025-11-23 11:10:26] 2025-11-23 16:09:43,217 | INFO     | current chi2=3.7358752369204615 (change=39.55103859445875 %)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,217 | INFO     | sum of square deviations: 23635854245.469246
[2025-11-23 11:10:26] 2025-11-23 16:09:43,221 | INFO     | sum of deviations: 202753361760.8841
[2025-11-23 11:10:26] 2025-11-23 16:09:43,221 | INFO     | mean x: 1763901258.7853773
[2025-11-23 11:10:26] 2025-11-23 16:09:43,221 | INFO     | mean y: 3464374.691037736
[2025-11-23 11:10:26] 2025-11-23 16:09:43,221 | INFO     | intersect: -15127654065.910524
[2025-11-23 11:10:26] 2025-11-23 16:09:43,222 | INFO     | chi2: 3.674190217382506
[2025-11-23 11:10:26] 2025-11-23 16:09:43,222 | INFO     | current chi2=3.674190217382506 (change=1.6511530933458944 %)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,222 | INFO     | left removable region: 20
[2025-11-23 11:10:26] 2025-11-23 16:09:43,223 | INFO     | sum of square deviations: 20295019113.861134
[2025-11-23 11:10:26] 2025-11-23 16:09:43,226 | INFO     | sum of deviations: 372915687445.2083
[2025-11-23 11:10:26] 2025-11-23 16:09:43,226 | INFO     | mean x: 1763901228.2952855
[2025-11-23 11:10:26] 2025-11-23 16:09:43,227 | INFO     | mean y: 3510946.05707196
[2025-11-23 11:10:26] 2025-11-23 16:09:43,227 | INFO     | intersect: -32407714460.768356
[2025-11-23 11:10:26] 2025-11-23 16:09:43,227 | INFO     | chi2: 0.04794591740960214
[2025-11-23 11:10:26] 2025-11-23 16:09:43,227 | INFO     | current memory leak: 18.37 B/s (using 403 data points, chi2=0.05)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | could have reported an average CPU frequency of 2359 MHz (18 samples)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | ..............................
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | . Timing measurements:
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | . get job = 0 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | . initial setup = 2 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | . payload setup = 7 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,228 | INFO     | . stage-in = 0 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,229 | INFO     | . payload execution = 26429 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,229 | INFO     | . stage-out = 3 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,229 | INFO     | . log creation = 0 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,229 | INFO     | ..............................
[2025-11-23 11:10:26] 2025-11-23 16:09:43,311 | INFO     | 
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | job summary report
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | --------------------------------------------------
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | PanDA job id: 6895336051
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | task id: 47556137
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | errors: (none)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,312 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | pilot state: finished 
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | transexitcode: 0
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | exeerrorcode: 0
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | exeerrordiag: 
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | exitcode: 0
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | exitmsg: OK
[2025-11-23 11:10:26] 2025-11-23 16:09:43,313 | INFO     | cpuconsumptiontime: 303749 s
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | nevents: 1000
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | neventsw: 0
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | pid: 13933
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | pgrp: 13933
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | corecount: 12
[2025-11-23 11:10:26] 2025-11-23 16:09:43,314 | INFO     | event service: False
[2025-11-23 11:10:26] 2025-11-23 16:09:43,315 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 26441: 2336614, 26444: 2345664, 26449: 2345854}
[2025-11-23 11:10:26] 2025-11-23 16:09:43,315 | INFO     | --------------------------------------------------
[2025-11-23 11:10:26] 2025-11-23 16:09:43,315 | INFO     | 
[2025-11-23 11:10:26] 2025-11-23 16:09:43,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 11:10:26] 2025-11-23 16:09:43,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,343 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:10:26] 2025-11-23 16:09:43,343 | INFO     | job 6895336051 has completed (purged errors)
[2025-11-23 11:10:26] 2025-11-23 16:09:43,343 | INFO     | overall cleanup function is called
[2025-11-23 11:10:26] 2025-11-23 16:09:44,360 | INFO     | --- collectZombieJob: --- 10, [13933]
[2025-11-23 11:10:26] 2025-11-23 16:09:44,360 | INFO     | zombie collector waiting for pid 13933
[2025-11-23 11:10:26] 2025-11-23 16:09:44,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:10:26] 2025-11-23 16:09:44,361 | INFO     | collected zombie processes
[2025-11-23 11:10:26] 2025-11-23 16:09:44,361 | INFO     | will attempt to kill all subprocesses of pid=13933
[2025-11-23 11:10:26] 2025-11-23 16:09:44,453 | INFO     | process IDs to be killed: [13933] (in reverse order)
[2025-11-23 11:10:26] 2025-11-23 16:09:44,506 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:10:26] 2025-11-23 16:09:44,506 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:10:26] 2025-11-23 16:09:44,509 | INFO     | did not find any defunct processes belonging to 13933
[2025-11-23 11:10:26] 2025-11-23 16:09:44,511 | INFO     | did not find any defunct processes belonging to 13933
[2025-11-23 11:10:26] 2025-11-23 16:09:44,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:10:26] 2025-11-23 16:09:44,513 | INFO     | ready for new job
[2025-11-23 11:10:26] 2025-11-23 16:09:44,513 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:10:26] 2025-11-23 16:09:44,515 | INFO     | ***************************************
[2025-11-23 11:10:26] 2025-11-23 16:09:44,515 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:10:26] 2025-11-23 16:09:44,516 | INFO     | ***************************************
[2025-11-23 11:10:26] 2025-11-23 16:09:44,516 | INFO     | 
[2025-11-23 11:10:26] 2025-11-23 16:09:44,516 | INFO     | architecture information:
[2025-11-23 11:10:26] 2025-11-23 16:09:44,517 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:10:26] 2025-11-23 16:09:44,532 | INFO     | cat /etc/os-release:
[2025-11-23 11:10:26] NAME="CentOS Linux"
[2025-11-23 11:10:26] VERSION="7 (Core)"
[2025-11-23 11:10:26] ID="centos"
[2025-11-23 11:10:26] ID_LIKE="rhel fedora"
[2025-11-23 11:10:26] VERSION_ID="7"
[2025-11-23 11:10:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:10:26] ANSI_COLOR="0;31"
[2025-11-23 11:10:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:10:26] HOME_URL="https://www.centos.org/"
[2025-11-23 11:10:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:10:26] 
[2025-11-23 11:10:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:10:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:10:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:10:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:10:26] 
[2025-11-23 11:10:26] 2025-11-23 16:09:44,532 | INFO     | ***************************************
[2025-11-23 11:10:26] 2025-11-23 16:09:45,035 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 11:10:26] 2025-11-23 16:09:45,100 | INFO     | sufficient remaining disk space (27815575552 B)
[2025-11-23 11:10:26] 2025-11-23 16:09:45,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:10:26] 2025-11-23 16:09:45,100 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:10:26] 2025-11-23 16:09:45,100 | INFO     | update_server=False
[2025-11-23 11:10:26] 2025-11-23 16:09:45,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:10:26] 2025-11-23 16:09:45,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:10:26] 2025-11-23 16:09:45,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:10:26] 2025-11-23 16:09:45,354 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 11:10:26] 2025-11-23 16:09:45,354 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 11:10:26] 2025-11-23 16:09:45,355 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:10:26] 2025-11-23 16:09:45,355 | INFO     | will abort loop
[2025-11-23 11:10:26] 2025-11-23 16:09:45,474 | INFO     | all data control threads have been joined
[2025-11-23 11:10:26] 2025-11-23 16:09:45,696 | INFO     | all payload control threads have been joined
[2025-11-23 11:10:26] 2025-11-23 16:09:45,834 | INFO     | all job control threads have been joined
[2025-11-23 11:10:26] 2025-11-23 16:09:46,103 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,107 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,183 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,202 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,232 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:10:26] 2025-11-23 16:09:46,360 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,476 | INFO     | [data] control thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,701 | INFO     | [payload] control thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,737 | INFO     | [job] validate thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,737 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:46,839 | INFO     | [job] control thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:47,027 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:47,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:47,188 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:48,322 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:09:49,104 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:10:26] 2025-11-23 16:10:15,748 | INFO     | PID=7093 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 11:10:26] 2025-11-23 16:10:15,749 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:10:26] 2025-11-23 16:10:15,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:10:26] 2025-11-23 16:10:15,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:10:26] 2025-11-23 16:10:20,615 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:10:26] 2025-11-23 16:10:20,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365609178944)>', '<ExcThread(monitor, started 140364849583872)>']
[2025-11-23 11:10:26] 2025-11-23 16:10:20,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:10:26] 2025-11-23 16:10:20,775 | INFO     | [monitor] control thread has ended
[2025-11-23 11:10:26] 2025-11-23 16:10:25,776 | INFO     | all workflow threads have been joined
[2025-11-23 11:10:26] 2025-11-23 16:10:25,776 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:10:26] 2025-11-23 16:10:25,785 | INFO     | traces error code: 0
[2025-11-23 11:10:26] 2025-11-23 16:10:25,785 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:10:26] 2025-11-23 16:10:25,867 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:10:26] 2025-11-23 16:10:25,871 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:10:26] 2025-11-23 16:10:25,874 [wrapper] pilotpid: 7093
[2025-11-23 11:10:26] 2025-11-23 16:10:25,878 [wrapper] Pilot exit status: 0
[2025-11-23 11:10:26] 2025-11-23 16:10:25,894 [wrapper] pandaids: 6895336051 6895336051
[2025-11-23 11:10:26] 2025-11-23 16:10:25,935 [wrapper] cleanup supervisor_pilot 22431 7094
[2025-11-23 11:10:26] 2025-11-23 16:10:25,939 [wrapper] Test setup, not cleaning
[2025-11-23 11:10:26] 2025-11-23 16:10:25,943 [wrapper] apfmon messages muted
[2025-11-23 11:10:26] 2025-11-23 16:10:25,947 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:10:26] 2025-11-23 16:10:25,951 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:10:26]  *** Error codes and diagnostics ***
[2025-11-23 11:10:26]     "exeErrorCode": 0,
[2025-11-23 11:10:26]     "exeErrorDiag": "",
[2025-11-23 11:10:26]     "pilotErrorCode": 0,
[2025-11-23 11:10:26]     "pilotErrorDiag": "",
[2025-11-23 11:10:26]  *** Listing of results directory ***
[2025-11-23 11:10:26] total 1733972
[2025-11-23 11:10:26] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 00:12 pilot3.tar.gz
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 00:12 queuedata.json
[2025-11-23 11:10:26] -rwx------ 1 boincer umatlas     36292 Nov 22 00:12 runpilot2-wrapper.sh
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas       100 Nov 22 22:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:10:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 22:27 run_atlas
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas       105 Nov 22 22:27 job.xml
[2025-11-23 11:10:26] -rw-r--r-- 3 boincer umatlas 410468004 Nov 22 22:28 EVNT.47483658._000265.pool.root.1
[2025-11-23 11:10:26] -rw-r--r-- 3 boincer umatlas 410468004 Nov 22 22:28 ATLAS.root_0
[2025-11-23 11:10:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:28 start_atlas.sh
[2025-11-23 11:10:26] drwxrwx--x 2 boincer umatlas      4096 Nov 22 22:28 shared
[2025-11-23 11:10:26] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 22:28 input.tar.gz
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas         0 Nov 22 22:28 boinc_lockfile
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas      2786 Nov 23 03:48 pandaJob.out
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas        57 Nov 23 03:48 setup.sh.local
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas    989784 Nov 23 03:48 agis_schedconf.cvmfs.json
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas       532 Nov 23 11:00 boinc_task_state.xml
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 11:01 init_data.xml
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas 938967974 Nov 23 11:09 HITS.47556137._002617.pool.root.1
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas      1061 Nov 23 11:09 memory_monitor_summary.json
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas   1526164 Nov 23 11:09 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas   2181333 Nov 23 11:09 log.47556137._002617.job.log.tgz.1
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas      8661 Nov 23 11:09 heartbeat.json
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 11:09 boinc_mmap_file
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas        29 Nov 23 11:09 wrapper_checkpoint.txt
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas        96 Nov 23 11:10 pilot_heartbeat.json
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas      4931 Nov 23 11:10 pilotlog.txt
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas   3699674 Nov 23 11:10 log.47556137._002617.job.log.1
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas       353 Nov 23 11:10 output.list
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas       620 Nov 23 11:10 runtime_log
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas   5898240 Nov 23 11:10 result.tar.gz
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas      9430 Nov 23 11:10 runtime_log.err
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas       795 Nov 23 11:10 JbRLDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCyJKDmA5TSLn.diag
[2025-11-23 11:10:26] -rw-r--r-- 1 boincer umatlas     23437 Nov 23 11:10 stderr.txt
[2025-11-23 11:10:26] HITS file was successfully produced:
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas 938967974 Nov 23 11:09 shared/HITS.pool.root.1
[2025-11-23 11:10:26]  *** Contents of shared directory: ***
[2025-11-23 11:10:26] total 1324172
[2025-11-23 11:10:26] -rw-r--r-- 3 boincer umatlas 410468004 Nov 22 22:28 ATLAS.root_0
[2025-11-23 11:10:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:28 start_atlas.sh
[2025-11-23 11:10:26] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 22:28 input.tar.gz
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas 938967974 Nov 23 11:09 HITS.pool.root.1
[2025-11-23 11:10:26] -rw------- 1 boincer umatlas   5898240 Nov 23 11:10 result.tar.gz
11:10:27 (2873): run_atlas exited; CPU time 296828.230264
11:10:27 (2873): called boinc_finish(0)

</stderr_txt>
]]>

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