Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-22 22:16:39 (21008): vboxwrapper version 26210
2025-11-22 22:16:39 (21008): BOINC client version: 8.2.6
2025-11-22 22:16:40 (21008): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-22 22:16:40 (21008): Successfully copied 'init_data.xml' to the shared directory.
2025-11-22 22:16:40 (21008): Create VM. (boinc_0339c24dd50fcb41, slot#7)
2025-11-22 22:16:41 (21008): Setting Memory Size for VM. (4300MB)
2025-11-22 22:16:41 (21008): Setting CPU Count for VM. (3)
2025-11-22 22:16:42 (21008): Setting Chipset Options for VM.
2025-11-22 22:16:42 (21008): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-22 22:16:42 (21008): Setting Boot Options for VM.
2025-11-22 22:16:43 (21008): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-22 22:16:43 (21008): Enabling VM Network Access.
2025-11-22 22:16:43 (21008): Disabling USB Support for VM.
2025-11-22 22:16:43 (21008): Disabling COM Port Support for VM.
2025-11-22 22:16:44 (21008): Disabling LPT Port Support for VM.
2025-11-22 22:16:44 (21008): Disabling Audio Support for VM.
2025-11-22 22:16:44 (21008): Disabling Clipboard Support for VM.
2025-11-22 22:16:45 (21008): Disabling Drag and Drop Support for VM.
2025-11-22 22:16:45 (21008): Adding storage controller(s) to VM.
2025-11-22 22:16:45 (21008): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-22 22:16:47 (21008): Adding VirtualBox Guest Additions to VM.
2025-11-22 22:16:47 (21008): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-22 22:16:48 (21008): forwarding host port 45649 to guest port 80
2025-11-22 22:16:48 (21008): Enabling remote desktop for VM.
2025-11-22 22:16:49 (21008): Enabling shared directory for VM.
2025-11-22 22:16:49 (21008): Starting VM using VBoxManage interface. (boinc_0339c24dd50fcb41, slot#7)
2025-11-22 22:16:57 (21008): Successfully started VM. (PID = '5764')
2025-11-22 22:16:57 (21008): Reporting VM Process ID to BOINC.
2025-11-22 22:16:57 (21008): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-22 22:16:57 (21008): Guest Log: CPUID EDX: 0x178bfbff
2025-11-22 22:16:57 (21008): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-22 22:16:57 (21008): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-22 22:16:57 (21008): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-22 22:16:57 (21008): Detected: Web Application Enabled (http://localhost:45649)
2025-11-22 22:16:57 (21008): Detected: Remote Desktop Enabled (localhost:45650)
2025-11-22 22:16:57 (21008): Preference change detected
2025-11-22 22:16:57 (21008): Setting CPU throttle for VM. (100%)
2025-11-22 22:16:57 (21008): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-22 22:16:59 (21008): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-22 22:16:59 (21008): Guest Log: BIOS: Booting from Hard Disk...
2025-11-22 22:17:02 (21008): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-22 22:17:02 (21008): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-22 22:17:02 (21008): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-22 22:17:09 (21008): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-22 22:17:09 (21008): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-22 22:17:15 (21008): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000158 main     Log opened 2025-11-22T22:17:13.408790000Z
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000261 main     OS Product: Linux
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000326 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000364 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000397 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000398 main     Process ID: 1293
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.000399 main     Package type: LINUX_64BITS_GENERIC
2025-11-22 22:17:15 (21008): Guest Log: 00:00:00.001353 main     5.2.32 r132073 started. Verbose level = 0
2025-11-22 22:17:15 (21008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-22 22:17:15 (21008): Guest Log: [INFO] Mounting shared directory
2025-11-22 22:17:15 (21008): Guest Log: [INFO] Checking for init_data.xml
2025-11-22 22:17:19 (21008): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-22 22:17:19 (21008): Guest Log: [INFO] Detected branch: prod
2025-11-22 22:17:19 (21008): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-22 22:17:19 (21008): Guest Log: Copying input files
2025-11-22 22:17:22 (21008): Guest Log: Copied input files into RunAtlas.
2025-11-22 22:17:22 (21008): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-22 22:17:22 (21008): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-22 22:17:22 (21008): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-22 22:17:22 (21008): Guest Log: Further information can be found at the LHC@home message board.
2025-11-22 22:17:25 (21008): Guest Log: 00:00:10.003637 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 085 596 000ns (GuestNow=1 763 867 844 496 883 000 ns GuestLast=1 763 849 833 411 287 000 ns fSetTimeLastLoop=true )
2025-11-22 22:17:30 (21008): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-22 22:17:30 (21008): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-22 22:17:30 (21008): Guest Log: 2.6.3.0 1571 0 32036 153195 4 1 3117639 4096000 0 65024 0 0 n/a 1 1 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-22 22:17:31 (21008): Guest Log: copied the webapp to /var/www
2025-11-22 22:17:31 (21008): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-22 22:17:31 (21008): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-22 22:17:31 (21008): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-22 22:17:31 (21008): Guest Log:  *** Starting ATLAS job. (PandaID=6895335457 taskID=47556137) ***
2025-11-22 23:57:03 (21008): Status Report: Elapsed Time: '6000.000000'
2025-11-22 23:57:03 (21008): Status Report: CPU Time: '16774.484375'
2025-11-23 01:37:11 (21008): Status Report: Elapsed Time: '12000.000000'
2025-11-23 01:37:11 (21008): Status Report: CPU Time: '34533.703125'
2025-11-23 03:17:18 (21008): Status Report: Elapsed Time: '18000.000000'
2025-11-23 03:17:18 (21008): Status Report: CPU Time: '52282.578125'
2025-11-23 04:57:26 (21008): Status Report: Elapsed Time: '24000.000000'
2025-11-23 04:57:26 (21008): Status Report: CPU Time: '70049.031250'
2025-11-23 06:37:33 (21008): Status Report: Elapsed Time: '30000.000000'
2025-11-23 06:37:33 (21008): Status Report: CPU Time: '87819.140625'
2025-11-23 08:17:41 (21008): Status Report: Elapsed Time: '36000.000000'
2025-11-23 08:17:41 (21008): Status Report: CPU Time: '105579.531250'
2025-11-23 09:57:50 (21008): Status Report: Elapsed Time: '42000.000000'
2025-11-23 09:57:50 (21008): Status Report: CPU Time: '123350.828125'
2025-11-23 11:37:58 (21008): Status Report: Elapsed Time: '48000.000000'
2025-11-23 11:37:58 (21008): Status Report: CPU Time: '141136.437500'
2025-11-23 13:18:05 (21008): Status Report: Elapsed Time: '54000.000000'
2025-11-23 13:18:05 (21008): Status Report: CPU Time: '158922.046875'
2025-11-23 14:58:12 (21008): Status Report: Elapsed Time: '60000.000000'
2025-11-23 14:58:12 (21008): Status Report: CPU Time: '176682.406250'
2025-11-23 15:35:56 (21008): Guest Log:  *** Job finished ***
2025-11-23 15:35:56 (21008): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:33,304 | INFO     | all workflow threads have been joined
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:33,304 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:33,304 | INFO     | traces error code: 0
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:33,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,482 | INFO     | PID=5941 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,483 | INFO     | found 0 job(s) in 20 queues
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,483 | INFO     | [monitor] control thread has ended
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,578 [wrapper] ==== pilot stdout END ====
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,582 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,587 [wrapper] pilotpid: 5941
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,592 [wrapper] Pilot exit status: 0
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,608 [wrapper] pandaids: 6895335457
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,638 [wrapper] cleanup supervisor_pilot 28531 5942
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,643 [wrapper] Test setup, not cleaning
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,648 [wrapper] apfmon messages muted
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,653 [wrapper] ==== wrapper stdout END ====
2025-11-23 15:35:56 (21008): Guest Log: 2025-11-23 20:35:53,659 [wrapper] ==== wrapper stderr END ====
2025-11-23 15:35:56 (21008): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 15:35:56 (21008): Guest Log:     "exeErrorCode": 0,
2025-11-23 15:35:56 (21008): Guest Log:     "exeErrorDiag": "",
2025-11-23 15:35:56 (21008): Guest Log:     "pilotErrorCode": 0,
2025-11-23 15:35:56 (21008): Guest Log:     "pilotErrorDiag": "",
2025-11-23 15:35:56 (21008): Guest Log:  *** Listing of results directory ***
2025-11-23 15:35:56 (21008): Guest Log: total 919440
2025-11-23 15:35:56 (21008): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 04:34 pilot3.tar.gz
2025-11-23 15:35:56 (21008): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 04:43 runpilot2-wrapper.sh
2025-11-23 15:35:56 (21008): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 04:43 queuedata.json
2025-11-23 15:35:56 (21008): Guest Log: -rwxr-xr-x. 1 atlas atlas     11860 Nov 23 03:17 init_data.xml
2025-11-23 15:35:56 (21008): Guest Log: -rwxr-xr-x. 1 atlas atlas    590096 Nov 23 03:17 input.tar.gz
2025-11-23 15:35:56 (21008): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 23 03:17 start_atlas.sh
2025-11-23 15:35:56 (21008): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 03:17 EVNT.47483658._000258.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 15:35:56 (21008): Guest Log: -rw-r--r--. 1 atlas atlas      2782 Nov 23 03:17 pandaJob.out
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 03:18 agis_schedconf.cvmfs.json
2025-11-23 15:35:56 (21008): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 03:18 pilot3
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas 917831844 Nov 23 20:34 HITS.47556137._002541.pool.root.1
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 23 20:35 memory_monitor_summary.json
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 20:35 agis_ddmendpoints.agis.ALL.json
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas   1589553 Nov 23 20:35 log.47556137._002541.job.log.tgz.1
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas      8665 Nov 23 20:35 heartbeat.json
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 20:35 pilot_heartbeat.json
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas       744 Nov 23 20:35 pilotlog.txt
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas   8321127 Nov 23 20:35 log.47556137._002541.job.log.1
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 20:35 output.list
2025-11-23 15:35:56 (21008): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 20:35 runtime_log
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas   9932800 Nov 23 20:35 result.tar.gz
2025-11-23 15:35:56 (21008): Guest Log: -rw-r--r--. 1 atlas atlas      8747 Nov 23 20:35 runtime_log.err
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas       662 Nov 23 20:35 EIYNDmodug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmExHKDmnxmlHo.diag
2025-11-23 15:35:56 (21008): Guest Log: Looking for outputfile HITS.47556137._002541.pool.root.1
2025-11-23 15:35:56 (21008): Guest Log: HITS file was successfully produced
2025-11-23 15:35:56 (21008): Guest Log: -rw-------. 1 atlas atlas 917831844 Nov 23 20:34 /home/atlas/RunAtlas/HITS.47556137._002541.pool.root.1
2025-11-23 15:36:01 (21008): Guest Log: Successfully finished the ATLAS job!
2025-11-23 15:36:01 (21008): Guest Log: Copying the results back to the shared directory!
2025-11-23 15:36:01 (21008): Guest Log:  *** Contents of shared directory: ***
2025-11-23 15:36:01 (21008): Guest Log: total 1307480
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root 410466981 Nov 23 03:16 ATLAS.root_0
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root 917831844 Nov 23 20:36 HITS.pool.root.1
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root     11860 Nov 23 03:16 init_data.xml
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root    590096 Nov 23 02:49 input.tar.gz
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root   9932800 Nov 23 20:36 result.tar.gz
2025-11-23 15:36:01 (21008): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 02:49 start_atlas.sh
2025-11-23 15:36:01 (21008): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 15:36:01 (21008): VM Completion File Detected.
2025-11-23 15:36:01 (21008): Powering off VM.
2025-11-23 15:36:02 (21008): Successfully stopped VM.
2025-11-23 15:36:02 (21008): Deregistering VM. (boinc_0339c24dd50fcb41, slot#7)
2025-11-23 15:36:02 (21008): Removing network bandwidth throttle group from VM.
2025-11-23 15:36:02 (21008): Removing VM from VirtualBox.
2025-11-23 15:36:07 (21008): called boinc_finish(0)

</stderr_txt>
]]>

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