Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:05:27 (2832779): wrapper (7.7.26015): starting
02:05:27 (2832779): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 02:05:27] Arguments: --nthreads 9
[2025-11-23 02:05:27] Threads: 9
[2025-11-23 02:05:27] Checking for CVMFS
[2025-11-23 02:05:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:05:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:05:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:05:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:05:27] 2.13.3.0 3025293 4309 90956 153199 1 81 11916385 37030913 1932 16776704 0 4786594 99.884 612166 15642 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 02:05:27] CVMFS is ok
[2025-11-23 02:05:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 02:05:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 02:05:27] Further information can be found at the LHC@home message board.
[2025-11-23 02:05:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:05:27] Checking for apptainer binary...
[2025-11-23 02:05:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:05:27] Running /usr/bin/apptainer --version
[2025-11-23 02:05:27] apptainer version 1.4.4-1.el9
[2025-11-23 02:05:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:05:27] c-205-37.aglt2.org
[2025-11-23 02:05:27] apptainer works
[2025-11-23 02:05:27] Set ATHENA_PROC_NUMBER=9
[2025-11-23 02:05:27] Set ATHENA_CORE_NUMBER=9
[2025-11-23 02:05:27] Starting ATLAS job with PandaID=6895335157
[2025-11-23 02:05:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:00:35]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:00:35] 2025-11-23 15:59:43,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,313 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 11:00:35] 2025-11-23 15:59:43,319 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2712.5678749999997
[2025-11-23 11:00:35] 2025-11-23 15:59:43,326 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895335157/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,326 | INFO     | extracted standard info from prmon json
[2025-11-23 11:00:35] 2025-11-23 15:59:43,326 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:00:35] 2025-11-23 15:59:43,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:00:35] 2025-11-23 15:59:43,337 | INFO     | fitting pss+swap vs Time
[2025-11-23 11:00:35] 2025-11-23 15:59:43,338 | INFO     | sum of square deviations: 44869773177.93133
[2025-11-23 11:00:35] 2025-11-23 15:59:43,345 | INFO     | sum of deviations: 673412760610.7827
[2025-11-23 11:00:35] 2025-11-23 15:59:43,345 | INFO     | mean x: 1763897544.0114286
[2025-11-23 11:00:35] 2025-11-23 15:59:43,345 | INFO     | mean y: 3101168.702857143
[2025-11-23 11:00:35] 2025-11-23 15:59:43,346 | INFO     | intersect: -26469756401.514065
[2025-11-23 11:00:35] 2025-11-23 15:59:43,346 | INFO     | chi2: 4.841930608159629
[2025-11-23 11:00:35] 2025-11-23 15:59:43,347 | INFO     | sum of square deviations: 43599946547.93089
[2025-11-23 11:00:35] 2025-11-23 15:59:43,355 | INFO     | sum of deviations: 838314636653.4153
[2025-11-23 11:00:35] 2025-11-23 15:59:43,355 | INFO     | mean x: 1763897391.5115385
[2025-11-23 11:00:35] 2025-11-23 15:59:43,355 | INFO     | mean y: 3120959.9307692307
[2025-11-23 11:00:35] 2025-11-23 15:59:43,355 | INFO     | intersect: -33912081189.07454
[2025-11-23 11:00:35] 2025-11-23 15:59:43,356 | INFO     | chi2: 2.3029079688032925
[2025-11-23 11:00:35] 2025-11-23 15:59:43,356 | INFO     | current chi2=2.3029079688032925 (change=52.438228566877264 %)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,357 | INFO     | sum of square deviations: 42354306417.93016
[2025-11-23 11:00:35] 2025-11-23 15:59:43,364 | INFO     | sum of deviations: 840562938202.0602
[2025-11-23 11:00:35] 2025-11-23 15:59:43,364 | INFO     | mean x: 1763897239.0116506
[2025-11-23 11:00:35] 2025-11-23 15:59:43,365 | INFO     | mean y: 3121219.8233009707
[2025-11-23 11:00:35] 2025-11-23 15:59:43,365 | INFO     | intersect: -35003157274.740036
[2025-11-23 11:00:35] 2025-11-23 15:59:43,365 | INFO     | chi2: 2.197819194858404
[2025-11-23 11:00:35] 2025-11-23 15:59:43,366 | INFO     | current chi2=2.197819194858404 (change=4.5633075819133975 %)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,366 | INFO     | right removable region: 514
[2025-11-23 11:00:35] 2025-11-23 15:59:43,367 | INFO     | sum of square deviations: 43599942887.9309
[2025-11-23 11:00:35] 2025-11-23 15:59:43,374 | INFO     | sum of deviations: 524667906769.50696
[2025-11-23 11:00:35] 2025-11-23 15:59:43,374 | INFO     | mean x: 1763897696.5115385
[2025-11-23 11:00:35] 2025-11-23 15:59:43,374 | INFO     | mean y: 3118989.9153846153
[2025-11-23 11:00:35] 2025-11-23 15:59:43,374 | INFO     | intersect: -21223067350.811333
[2025-11-23 11:00:35] 2025-11-23 15:59:43,375 | INFO     | chi2: 2.8250117775732466
[2025-11-23 11:00:35] 2025-11-23 15:59:43,375 | INFO     | current chi2=2.8250117775732466 (change=41.655260965274216 %)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,376 | INFO     | sum of square deviations: 42354299097.93016
[2025-11-23 11:00:35] 2025-11-23 15:59:43,383 | INFO     | sum of deviations: 483105662945.85675
[2025-11-23 11:00:35] 2025-11-23 15:59:43,384 | INFO     | mean x: 1763897849.0116506
[2025-11-23 11:00:35] 2025-11-23 15:59:43,384 | INFO     | mean y: 3124077.3572815536
[2025-11-23 11:00:35] 2025-11-23 15:59:43,384 | INFO     | intersect: -20116416509.18942
[2025-11-23 11:00:35] 2025-11-23 15:59:43,385 | INFO     | chi2: 2.769122840975911
[2025-11-23 11:00:35] 2025-11-23 15:59:43,385 | INFO     | current chi2=2.769122840975911 (change=1.978361189182212 %)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,385 | INFO     | left removable region: 20
[2025-11-23 11:00:35] 2025-11-23 15:59:43,386 | INFO     | sum of square deviations: 37381471341.42705
[2025-11-23 11:00:35] 2025-11-23 15:59:43,392 | INFO     | sum of deviations: 589628633792.8947
[2025-11-23 11:00:35] 2025-11-23 15:59:43,392 | INFO     | mean x: 1763897818.5121458
[2025-11-23 11:00:35] 2025-11-23 15:59:43,392 | INFO     | mean y: 3152344.6842105263
[2025-11-23 11:00:35] 2025-11-23 15:59:43,392 | INFO     | intersect: -27819312196.11039
[2025-11-23 11:00:35] 2025-11-23 15:59:43,393 | INFO     | chi2: 0.08452965717494368
[2025-11-23 11:00:35] 2025-11-23 15:59:43,393 | INFO     | current memory leak: 15.77 B/s (using 494 data points, chi2=0.08)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,394 | INFO     | could have reported an average CPU frequency of 2617 MHz (21 samples)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,394 | INFO     | ..............................
[2025-11-23 11:00:35] 2025-11-23 15:59:43,394 | INFO     | . Timing measurements:
[2025-11-23 11:00:35] 2025-11-23 15:59:43,394 | INFO     | . get job = 0 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,394 | INFO     | . initial setup = 2 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | . payload setup = 5 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | . stage-in = 0 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | . payload execution = 32008 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | . stage-out = 3 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | . log creation = 0 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,395 | INFO     | ..............................
[2025-11-23 11:00:35] 2025-11-23 15:59:43,500 | INFO     | 
[2025-11-23 11:00:35] 2025-11-23 15:59:43,500 | INFO     | job summary report
[2025-11-23 11:00:35] 2025-11-23 15:59:43,500 | INFO     | --------------------------------------------------
[2025-11-23 11:00:35] 2025-11-23 15:59:43,500 | INFO     | PanDA job id: 6895335157
[2025-11-23 11:00:35] 2025-11-23 15:59:43,500 | INFO     | task id: 47556149
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | errors: (none)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | pilot state: finished 
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | transexitcode: 0
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | exeerrorcode: 0
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | exeerrordiag: 
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | exitcode: 0
[2025-11-23 11:00:35] 2025-11-23 15:59:43,501 | INFO     | exitmsg: OK
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | cpuconsumptiontime: 283126 s
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | nevents: 1000
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | neventsw: 0
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | pid: 2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | pgrp: 2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | corecount: 9
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | event service: False
[2025-11-23 11:00:35] 2025-11-23 15:59:43,502 | INFO     | sizes: {0: 2298634, 1: 2298833, 4: 2299095, 12: 2299123, 32017: 2338736, 32021: 2347730, 32024: 2347914, 32030: 2348160}
[2025-11-23 11:00:35] 2025-11-23 15:59:43,503 | INFO     | --------------------------------------------------
[2025-11-23 11:00:35] 2025-11-23 15:59:43,503 | INFO     | 
[2025-11-23 11:00:35] 2025-11-23 15:59:43,503 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 11:00:35] 2025-11-23 15:59:43,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | job 6895335157 has completed (purged errors)
[2025-11-23 11:00:35] 2025-11-23 15:59:43,522 | INFO     | overall cleanup function is called
[2025-11-23 11:00:35] 2025-11-23 15:59:44,539 | INFO     | --- collectZombieJob: --- 10, [2842922]
[2025-11-23 11:00:35] 2025-11-23 15:59:44,540 | INFO     | zombie collector waiting for pid 2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:44,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:00:35] 2025-11-23 15:59:44,540 | INFO     | collected zombie processes
[2025-11-23 11:00:35] 2025-11-23 15:59:44,540 | INFO     | will attempt to kill all subprocesses of pid=2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:44,738 | INFO     | process IDs to be killed: [2842922] (in reverse order)
[2025-11-23 11:00:35] 2025-11-23 15:59:44,795 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:00:35] 2025-11-23 15:59:44,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:00:35] 2025-11-23 15:59:44,801 | INFO     | did not find any defunct processes belonging to 2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:44,806 | INFO     | did not find any defunct processes belonging to 2842922
[2025-11-23 11:00:35] 2025-11-23 15:59:44,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:00:35] 2025-11-23 15:59:44,808 | INFO     | ready for new job
[2025-11-23 11:00:35] 2025-11-23 15:59:44,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:00:35] 2025-11-23 15:59:44,811 | INFO     | ***************************************
[2025-11-23 11:00:35] 2025-11-23 15:59:44,811 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:00:35] 2025-11-23 15:59:44,811 | INFO     | ***************************************
[2025-11-23 11:00:35] 2025-11-23 15:59:44,811 | INFO     | 
[2025-11-23 11:00:35] 2025-11-23 15:59:44,813 | INFO     | architecture information:
[2025-11-23 11:00:35] 2025-11-23 15:59:44,814 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:00:35] 2025-11-23 15:59:44,826 | INFO     | cat /etc/os-release:
[2025-11-23 11:00:35] NAME="CentOS Linux"
[2025-11-23 11:00:35] VERSION="7 (Core)"
[2025-11-23 11:00:35] ID="centos"
[2025-11-23 11:00:35] ID_LIKE="rhel fedora"
[2025-11-23 11:00:35] VERSION_ID="7"
[2025-11-23 11:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:00:35] ANSI_COLOR="0;31"
[2025-11-23 11:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:00:35] HOME_URL="https://www.centos.org/"
[2025-11-23 11:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:00:35] 
[2025-11-23 11:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:00:35] 
[2025-11-23 11:00:35] 2025-11-23 15:59:44,826 | INFO     | ***************************************
[2025-11-23 11:00:35] 2025-11-23 15:59:45,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 11:00:35] 2025-11-23 15:59:45,343 | INFO     | sufficient remaining disk space (38408290304 B)
[2025-11-23 11:00:35] 2025-11-23 15:59:45,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:00:35] 2025-11-23 15:59:45,344 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:00:35] 2025-11-23 15:59:45,344 | INFO     | update_server=False
[2025-11-23 11:00:35] 2025-11-23 15:59:45,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:00:35] 2025-11-23 15:59:45,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:00:35] 2025-11-23 15:59:45,593 | INFO     | all job control threads have been joined
[2025-11-23 11:00:35] 2025-11-23 15:59:45,729 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 11:00:35] 2025-11-23 15:59:45,729 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 11:00:35] 2025-11-23 15:59:45,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:00:35] 2025-11-23 15:59:45,729 | INFO     | will abort loop
[2025-11-23 11:00:35] 2025-11-23 15:59:46,021 | INFO     | all data control threads have been joined
[2025-11-23 11:00:35] 2025-11-23 15:59:46,079 | INFO     | all payload control threads have been joined
[2025-11-23 11:00:35] 2025-11-23 15:59:46,349 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:46,350 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:46,599 | INFO     | [job] control thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:46,676 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:46,734 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:46,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:00:35] 2025-11-23 15:59:46,852 | INFO     | [job] validate thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,027 | INFO     | [data] control thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,032 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,084 | INFO     | [payload] control thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,140 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,222 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,281 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,395 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,536 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:47,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:00:35] 2025-11-23 15:59:48,808 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:00:35] 2025-11-23 15:59:51,800 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:00:35] 2025-11-23 16:00:16,286 | INFO     | PID=2836532 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:00:35] 2025-11-23 16:00:16,286 | INFO     | .. there are 3 such processes running
[2025-11-23 11:00:35] 2025-11-23 16:00:16,287 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:00:35] 2025-11-23 16:00:16,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:00:35] 2025-11-23 16:00:16,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:00:35] 2025-11-23 16:00:28,150 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:00:35] 2025-11-23 16:00:30,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657883363136)>', '<ExcThread(monitor, started 139657169860352)>']
[2025-11-23 11:00:35] 2025-11-23 16:00:30,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:00:35] 2025-11-23 16:00:30,356 | INFO     | [monitor] control thread has ended
[2025-11-23 11:00:35] 2025-11-23 16:00:35,135 | INFO     | all workflow threads have been joined
[2025-11-23 11:00:35] 2025-11-23 16:00:35,136 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:00:35] 2025-11-23 16:00:35,136 | INFO     | traces error code: 0
[2025-11-23 11:00:35] 2025-11-23 16:00:35,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:00:35] 2025-11-23 16:00:35,243 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:00:35] 2025-11-23 16:00:35,245 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:00:35] 2025-11-23 16:00:35,248 [wrapper] pilotpid: 2836532
[2025-11-23 11:00:35] 2025-11-23 16:00:35,250 [wrapper] Pilot exit status: 0
[2025-11-23 11:00:35] 2025-11-23 16:00:35,259 [wrapper] pandaids: 6895335157
[2025-11-23 11:00:35] 2025-11-23 16:00:35,294 [wrapper] cleanup supervisor_pilot 3300730 2836533
[2025-11-23 11:00:35] 2025-11-23 16:00:35,296 [wrapper] Test setup, not cleaning
[2025-11-23 11:00:35] 2025-11-23 16:00:35,299 [wrapper] apfmon messages muted
[2025-11-23 11:00:35] 2025-11-23 16:00:35,301 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:00:35] 2025-11-23 16:00:35,304 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:00:35]  *** Error codes and diagnostics ***
[2025-11-23 11:00:35]     "exeErrorCode": 0,
[2025-11-23 11:00:35]     "exeErrorDiag": "",
[2025-11-23 11:00:35]     "pilotErrorCode": 0,
[2025-11-23 11:00:35]     "pilotErrorDiag": "",
[2025-11-23 11:00:35]  *** Listing of results directory ***
[2025-11-23 11:00:35] total 1327752
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 23:09 pilot3.tar.gz
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 23:32 queuedata.json
[2025-11-23 11:00:35] -rwx------. 1 boincer umatlas     36292 Nov 21 23:32 runpilot2-wrapper.sh
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas       100 Nov 23 02:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:00:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 02:05 run_atlas
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas       105 Nov 23 02:05 job.xml
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas 412997791 Nov 23 02:05 EVNT.47483658._001064.pool.root.1
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:05 start_atlas.sh
[2025-11-23 11:00:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 02:05 shared
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 02:05 input.tar.gz
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas         0 Nov 23 02:05 boinc_lockfile
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 02:05 pandaJob.out
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas    989784 Nov 23 02:05 agis_schedconf.cvmfs.json
[2025-11-23 11:00:35] drwx------. 5 boincer umatlas      4096 Nov 23 02:05 pilot3
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas       533 Nov 23 10:52 boinc_task_state.xml
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas      6530 Nov 23 10:55 init_data.xml
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas 929646506 Nov 23 10:58 HITS.47556149._000509.pool.root.1
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas      1046 Nov 23 10:59 memory_monitor_summary.json
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas   1526164 Nov 23 10:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas   1933615 Nov 23 10:59 log.47556149._000509.job.log.tgz.1
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas      8615 Nov 23 10:59 heartbeat.json
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas        95 Nov 23 11:00 pilot_heartbeat.json
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas        29 Nov 23 11:00 wrapper_checkpoint.txt
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 11:00 boinc_mmap_file
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas      5009 Nov 23 11:00 pilotlog.txt
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas   4587609 Nov 23 11:00 log.47556149._000509.job.log.1
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas       353 Nov 23 11:00 output.list
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas       620 Nov 23 11:00 runtime_log
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas   6543360 Nov 23 11:00 result.tar.gz
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas      8818 Nov 23 11:00 runtime_log.err
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas       659 Nov 23 11:00 6okKDmuTug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOwJKDmcCa3Jn.diag
[2025-11-23 11:00:35] -rw-r--r--. 1 boincer umatlas     21327 Nov 23 11:00 stderr.txt
[2025-11-23 11:00:35] HITS file was successfully produced:
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas 929646506 Nov 23 10:58 shared/HITS.pool.root.1
[2025-11-23 11:00:35]  *** Contents of shared directory: ***
[2025-11-23 11:00:35] total 1318176
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas 412997791 Nov 23 02:05 ATLAS.root_0
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:05 start_atlas.sh
[2025-11-23 11:00:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 02:05 input.tar.gz
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas 929646506 Nov 23 10:58 HITS.pool.root.1
[2025-11-23 11:00:35] -rw-------. 1 boincer umatlas   6543360 Nov 23 11:00 result.tar.gz
11:00:36 (2832779): run_atlas exited; CPU time 283449.024781
11:00:36 (2832779): called boinc_finish(0)

</stderr_txt>
]]>

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