Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:39 (1321552): wrapper (7.7.26015): starting
22:13:39 (1321552): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 22:13:39] Arguments: --nthreads 3
[2025-11-25 22:13:39] Threads: 3
[2025-11-25 22:13:39] Checking for CVMFS
[2025-11-25 22:13:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:13:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:13:40] 2.9.2.0 4159227 10153 89940 153297 0 81 36253760 36864000 0 130560 1 3754151 99.927 527988 740 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 22:13:40] CVMFS is ok
[2025-11-25 22:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:13:40] Further information can be found at the LHC@home message board.
[2025-11-25 22:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:13:40] Checking for apptainer binary...
[2025-11-25 22:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:13:40] Running /usr/bin/apptainer --version
[2025-11-25 22:13:40] apptainer version 1.4.1-1.1
[2025-11-25 22:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:13:40] thA349
[2025-11-25 22:13:40] apptainer works
[2025-11-25 22:13:40] Set ATHENA_PROC_NUMBER=3
[2025-11-25 22:13:40] Set ATHENA_CORE_NUMBER=3
[2025-11-25 22:13:40] Starting ATLAS job with PandaID=6893935600
[2025-11-25 22:13:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:38:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | job 6893935600 has completed (purged errors)
[2025-11-26 01:38:07] 2025-11-26 00:37:17,302 | INFO     | overall cleanup function is called
[2025-11-26 01:38:07] 2025-11-26 00:37:18,309 | INFO     | --- collectZombieJob: --- 10, [1331741]
[2025-11-26 01:38:07] 2025-11-26 00:37:18,309 | INFO     | zombie collector waiting for pid 1331741
[2025-11-26 01:38:07] 2025-11-26 00:37:18,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:38:07] 2025-11-26 00:37:18,309 | INFO     | collected zombie processes
[2025-11-26 01:38:07] 2025-11-26 00:37:18,309 | INFO     | will attempt to kill all subprocesses of pid=1331741
[2025-11-26 01:38:07] 2025-11-26 00:37:18,352 | INFO     | process IDs to be killed: [1331741] (in reverse order)
[2025-11-26 01:38:07] 2025-11-26 00:37:18,377 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:38:07] 2025-11-26 00:37:18,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:38:07] 2025-11-26 00:37:18,378 | INFO     | did not find any defunct processes belonging to 1331741
[2025-11-26 01:38:07] 2025-11-26 00:37:18,379 | INFO     | did not find any defunct processes belonging to 1331741
[2025-11-26 01:38:07] 2025-11-26 00:37:18,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:38:07] 2025-11-26 00:37:18,380 | INFO     | ready for new job
[2025-11-26 01:38:07] 2025-11-26 00:37:18,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | ***************************************
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | ***************************************
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | 
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | architecture information:
[2025-11-26 01:38:07] 2025-11-26 00:37:18,381 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:38:07] 2025-11-26 00:37:18,391 | INFO     | cat /etc/os-release:
[2025-11-26 01:38:07] NAME="CentOS Linux"
[2025-11-26 01:38:07] VERSION="7 (Core)"
[2025-11-26 01:38:07] ID="centos"
[2025-11-26 01:38:07] ID_LIKE="rhel fedora"
[2025-11-26 01:38:07] VERSION_ID="7"
[2025-11-26 01:38:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:38:07] ANSI_COLOR="0;31"
[2025-11-26 01:38:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:38:07] HOME_URL="https://www.centos.org/"
[2025-11-26 01:38:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:38:07] 
[2025-11-26 01:38:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:38:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:38:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:38:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:38:07] 
[2025-11-26 01:38:07] 2025-11-26 00:37:18,391 | INFO     | ***************************************
[2025-11-26 01:38:07] 2025-11-26 00:37:18,894 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | INFO     | sufficient remaining disk space (266047848448 B)
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | INFO     | update_server=False
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 01:38:07] 2025-11-26 00:37:18,908 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:38:07] 2025-11-26 00:37:18,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:38:07] 2025-11-26 00:37:18,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:38:07] 2025-11-26 00:37:18,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:38:07] 2025-11-26 00:37:18,928 | INFO     | all payload control threads have been joined
[2025-11-26 01:38:07] 2025-11-26 00:37:19,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:38:07] 2025-11-26 00:37:19,575 | INFO     | all data control threads have been joined
[2025-11-26 01:38:07] 2025-11-26 00:37:19,840 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:38:07] 2025-11-26 00:37:19,840 | INFO     | aborting loop
[2025-11-26 01:38:07] 2025-11-26 00:37:19,873 | INFO     | all job control threads have been joined
[2025-11-26 01:38:07] 2025-11-26 00:37:19,910 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:19,910 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:19,933 | INFO     | [payload] control thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,287 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,377 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,490 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,517 | INFO     | [job] validate thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,581 | INFO     | [data] control thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,690 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,846 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,879 | INFO     | [job] control thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:20,969 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:21,172 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:21,490 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:21,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:38:07] 2025-11-26 00:37:25,741 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:37:29,103 | INFO     | job.realtimelogging is not enabled
[2025-11-26 01:38:07] 2025-11-26 00:37:30,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:38:07] 2025-11-26 00:38:00,754 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:38:07] 2025-11-26 00:38:02,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922969749312)>', '<ExcThread(monitor, started 139922610562816)>']
[2025-11-26 01:38:07] 2025-11-26 00:38:02,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:38:07] 2025-11-26 00:38:02,135 | INFO     | [monitor] control thread has ended
[2025-11-26 01:38:07] 2025-11-26 00:38:07,085 | INFO     | all workflow threads have been joined
[2025-11-26 01:38:07] 2025-11-26 00:38:07,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:38:07] 2025-11-26 00:38:07,086 | INFO     | traces error code: 0
[2025-11-26 01:38:07] 2025-11-26 00:38:07,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:38:07] 2025-11-26 00:38:07,137 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:38:07] 2025-11-26 00:38:07,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:38:07] 2025-11-26 00:38:07,142 [wrapper] pilotpid: 1325290
[2025-11-26 01:38:07] 2025-11-26 00:38:07,145 [wrapper] Pilot exit status: 0
[2025-11-26 01:38:07] 2025-11-26 00:38:07,152 [wrapper] pandaids: 6893935600
[2025-11-26 01:38:07] 2025-11-26 00:38:07,171 [wrapper] cleanup supervisor_pilot 1354951 1325291
[2025-11-26 01:38:07] 2025-11-26 00:38:07,173 [wrapper] Test setup, not cleaning
[2025-11-26 01:38:07] 2025-11-26 00:38:07,176 [wrapper] apfmon messages muted
[2025-11-26 01:38:07] 2025-11-26 00:38:07,178 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:38:07] 2025-11-26 00:38:07,181 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:38:07]  *** Error codes and diagnostics ***
[2025-11-26 01:38:07]     "exeErrorCode": 0,
[2025-11-26 01:38:07]     "exeErrorDiag": "",
[2025-11-26 01:38:07]     "pilotErrorCode": 0,
[2025-11-26 01:38:07]     "pilotErrorDiag": "",
[2025-11-26 01:38:07]  *** Listing of results directory ***
[2025-11-26 01:38:07] total 629544
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc    576529 Nov 21 10:27 pilot3.tar.gz
[2025-11-26 01:38:07] -rwx------ 1 boinc boinc     36292 Nov 21 10:32 runpilot2-wrapper.sh
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc      5112 Nov 21 10:32 queuedata.json
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc       100 Nov 25 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:38:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:13 run_atlas
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc       105 Nov 25 22:13 job.xml
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc 301644512 Nov 25 22:13 EVNT.47523632._000005.pool.root.1
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc    589949 Nov 25 22:13 input.tar.gz
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:13 start_atlas.sh
[2025-11-26 01:38:07] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:13 shared
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:13 boinc_setup_complete
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc      6447 Nov 25 22:13 init_data.xml
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:13 boinc_lockfile
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc      2631 Nov 25 22:13 pandaJob.out
[2025-11-26 01:38:07] -rw------- 1 boinc boinc    991893 Nov 25 22:13 agis_schedconf.cvmfs.json
[2025-11-26 01:38:07] drwx------ 5 boinc boinc      4096 Nov 25 22:13 pilot3
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc       530 Nov 26 01:36 boinc_task_state.xml
[2025-11-26 01:38:07] -rw------- 1 boinc boinc 334949460 Nov 26 01:36 HITS.47523634._000110.pool.root.1
[2025-11-26 01:38:07] -rw------- 1 boinc boinc        95 Nov 26 01:36 pilot_heartbeat.json
[2025-11-26 01:38:07] -rw------- 1 boinc boinc      1019 Nov 26 01:37 memory_monitor_summary.json
[2025-11-26 01:38:07] -rw------- 1 boinc boinc   1516240 Nov 26 01:37 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:38:07] -rw------- 1 boinc boinc    353541 Nov 26 01:37 log.47523634._000110.job.log.tgz.1
[2025-11-26 01:38:07] -rw------- 1 boinc boinc      7751 Nov 26 01:37 heartbeat.json
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc        28 Nov 26 01:38 wrapper_checkpoint.txt
[2025-11-26 01:38:07] -rw------- 1 boinc boinc      4628 Nov 26 01:38 pilotlog.txt
[2025-11-26 01:38:07] -rw------- 1 boinc boinc   1727841 Nov 26 01:38 log.47523634._000110.job.log.1
[2025-11-26 01:38:07] -rw------- 1 boinc boinc       357 Nov 26 01:38 output.list
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc       620 Nov 26 01:38 runtime_log
[2025-11-26 01:38:07] -rw------- 1 boinc boinc   2099200 Nov 26 01:38 result.tar.gz
[2025-11-26 01:38:07] -rw------- 1 boinc boinc       661 Nov 26 01:38 wcnLDmDgcg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfFJKDmoe7nhm.diag
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc      8898 Nov 26 01:38 runtime_log.err
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc      8192 Nov 26 01:38 boinc_mmap_file
[2025-11-26 01:38:07] -rw-r--r-- 1 boinc boinc     11657 Nov 26 01:38 stderr.txt
[2025-11-26 01:38:07] HITS file was successfully produced:
[2025-11-26 01:38:07] -rw------- 1 boinc boinc 334949460 Nov 26 01:36 shared/HITS.pool.root.1
[2025-11-26 01:38:07]  *** Contents of shared directory: ***
[2025-11-26 01:38:07] total 624328
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc 301644512 Nov 25 22:13 ATLAS.root_0
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc    589949 Nov 25 22:13 input.tar.gz
[2025-11-26 01:38:07] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:13 start_atlas.sh
[2025-11-26 01:38:07] -rw------- 1 boinc boinc 334949460 Nov 26 01:36 HITS.pool.root.1
[2025-11-26 01:38:07] -rw------- 1 boinc boinc   2099200 Nov 26 01:38 result.tar.gz
01:38:08 (1321552): run_atlas exited; CPU time 35860.063974
01:38:08 (1321552): called boinc_finish(0)

</stderr_txt>
]]>

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