Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:20 (491673): wrapper (7.7.26015): starting
00:02:20 (491673): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:02:20] Arguments: --nthreads 12
[2025-11-23 00:02:20] Threads: 12
[2025-11-23 00:02:20] Checking for CVMFS
[2025-11-23 00:02:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:23] 2.13.2.0 6573 28112 384292 153197 0 312 35028803 40960000 20456 16776704 0 60238473 99.639 51554834 37670 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:02:23] CVMFS is ok
[2025-11-23 00:02:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:23] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:23] Checking for apptainer binary...
[2025-11-23 00:02:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:23] Running /usr/bin/apptainer --version
[2025-11-23 00:02:23] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:24] c-206-35.aglt2.org
[2025-11-23 00:02:24] apptainer works
[2025-11-23 00:02:24] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:02:24] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:02:24] Starting ATLAS job with PandaID=6895328078
[2025-11-23 00:02:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 18:02:20]  *** The last 200 lines of the pilot log: ***
[2025-11-23 18:02:20] 2025-11-23 23:01:33,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:02:20] 2025-11-23 23:01:33,521 | INFO     | time since job start (64634s) is within the limit (172800.0s)
[2025-11-23 18:02:20] 2025-11-23 23:01:35,253 | INFO     | PID=496821 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 18:02:20] 2025-11-23 23:01:35,253 | INFO     | .. there are 18 such processes running
[2025-11-23 18:02:20] 2025-11-23 23:01:35,522 | INFO     | monitor loop #4017: job 0:6895328078 is in state 'finished'
[2025-11-23 18:02:20] 2025-11-23 23:01:35,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:02:20] 2025-11-23 23:01:36,254 | INFO     | time since job start (64637s) is within the limit (172800.0s)
[2025-11-23 18:02:20] 2025-11-23 23:01:38,028 | INFO     | monitor loop #4018: job 0:6895328078 is in state 'finished'
[2025-11-23 18:02:20] 2025-11-23 23:01:38,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:02:20] 2025-11-23 23:01:38,261 | INFO     | time since job start (64639s) is within the limit (172800.0s)
[2025-11-23 18:02:20] 2025-11-23 23:01:38,261 | INFO     | 64650s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 18:02:20] 2025-11-23 23:01:40,269 | INFO     | time since job start (64641s) is within the limit (172800.0s)
[2025-11-23 18:02:20] 2025-11-23 23:01:40,533 | INFO     | monitor loop #4019: job 0:6895328078 is in state 'finished'
[2025-11-23 18:02:20] 2025-11-23 23:01:40,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:02:20] 2025-11-23 23:01:42,282 | INFO     | time since job start (64643s) is within the limit (172800.0s)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,038 | INFO     | monitor loop #4020: job 0:6895328078 is in state 'finished'
[2025-11-23 18:02:20] 2025-11-23 23:01:43,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,357 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 18:02:20] 2025-11-23 23:01:43,382 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3228.3121718750003
[2025-11-23 18:02:20] 2025-11-23 23:01:43,402 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895328078/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,403 | INFO     | extracted standard info from prmon json
[2025-11-23 18:02:20] 2025-11-23 23:01:43,403 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 18:02:20] 2025-11-23 23:01:43,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 18:02:20] 2025-11-23 23:01:43,431 | INFO     | fitting pss+swap vs Time
[2025-11-23 18:02:20] 2025-11-23 23:01:43,437 | INFO     | sum of square deviations: 365127021469.2386
[2025-11-23 18:02:20] 2025-11-23 23:01:43,461 | INFO     | sum of deviations: 6050054309246.445
[2025-11-23 18:02:20] 2025-11-23 23:01:43,461 | INFO     | mean x: 1763906644.6761363
[2025-11-23 18:02:20] 2025-11-23 23:01:43,461 | INFO     | mean y: 3422842.621212121
[2025-11-23 18:02:20] 2025-11-23 23:01:43,461 | INFO     | intersect: -29224025056.986988
[2025-11-23 18:02:20] 2025-11-23 23:01:43,462 | INFO     | chi2: 36.19550643119168
[2025-11-23 18:02:20] 2025-11-23 23:01:43,463 | INFO     | sum of square deviations: 359965789458.559
[2025-11-23 18:02:20] 2025-11-23 23:01:43,494 | INFO     | sum of deviations: 6492894463281.141
[2025-11-23 18:02:20] 2025-11-23 23:01:43,495 | INFO     | mean x: 1763906492.1912465
[2025-11-23 18:02:20] 2025-11-23 23:01:43,495 | INFO     | mean y: 3435929.4072312084
[2025-11-23 18:02:20] 2025-11-23 23:01:43,495 | INFO     | intersect: -31813083951.88752
[2025-11-23 18:02:20] 2025-11-23 23:01:43,496 | INFO     | chi2: 32.85201636719298
[2025-11-23 18:02:20] 2025-11-23 23:01:43,496 | INFO     | current chi2=32.85201636719298 (change=9.237307040736496 %)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,496 | INFO     | right removable region: 1050
[2025-11-23 18:02:20] 2025-11-23 23:01:43,497 | INFO     | sum of square deviations: 359963743518.5591
[2025-11-23 18:02:20] 2025-11-23 23:01:43,527 | INFO     | sum of deviations: 5507842014331.855
[2025-11-23 18:02:20] 2025-11-23 23:01:43,528 | INFO     | mean x: 1763906797.1912465
[2025-11-23 18:02:20] 2025-11-23 23:01:43,528 | INFO     | mean y: 3438857.960989534
[2025-11-23 18:02:20] 2025-11-23 23:01:43,528 | INFO     | intersect: -26986279250.786766
[2025-11-23 18:02:20] 2025-11-23 23:01:43,529 | INFO     | chi2: 30.78643305674669
[2025-11-23 18:02:20] 2025-11-23 23:01:43,529 | INFO     | current chi2=30.78643305674669 (change=14.944046672555162 %)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,529 | INFO     | left removable region: 10
[2025-11-23 18:02:20] 2025-11-23 23:01:43,530 | INFO     | sum of square deviations: 348778733629.34985
[2025-11-23 18:02:20] 2025-11-23 23:01:43,555 | INFO     | sum of deviations: 5538198923551.109
[2025-11-23 18:02:20] 2025-11-23 23:01:43,555 | INFO     | mean x: 1763906766.725
[2025-11-23 18:02:20] 2025-11-23 23:01:43,555 | INFO     | mean y: 3470454.042307692
[2025-11-23 18:02:20] 2025-11-23 23:01:43,555 | INFO     | intersect: -28005308794.24285
[2025-11-23 18:02:20] 2025-11-23 23:01:43,556 | INFO     | chi2: 21.909088736726478
[2025-11-23 18:02:20] 2025-11-23 23:01:43,556 | INFO     | current memory leak: 15.88 B/s (using 1040 data points, chi2=21.91)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | could have reported an average CPU frequency of 3257 MHz (39 samples)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | ..............................
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . Timing measurements:
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . get job = 0 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . initial setup = 11 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . payload setup = 93 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . stage-in = 0 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,558 | INFO     | . payload execution = 64457 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,559 | INFO     | . stage-out = 5 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,559 | INFO     | . log creation = 1 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,559 | INFO     | ..............................
[2025-11-23 18:02:20] 2025-11-23 23:01:43,640 | INFO     | 
[2025-11-23 18:02:20] 2025-11-23 23:01:43,640 | INFO     | job summary report
[2025-11-23 18:02:20] 2025-11-23 23:01:43,640 | INFO     | --------------------------------------------------
[2025-11-23 18:02:20] 2025-11-23 23:01:43,640 | INFO     | PanDA job id: 6895328078
[2025-11-23 18:02:20] 2025-11-23 23:01:43,640 | INFO     | task id: 47556137
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | errors: (none)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | pilot state: finished 
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | transexitcode: 0
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | exeerrorcode: 0
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | exeerrordiag: 
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | exitcode: 0
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | exitmsg: OK
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | cpuconsumptiontime: 204256 s
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | nevents: 1000
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | neventsw: 0
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | pid: 505076
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | pgrp: 505076
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | corecount: 12
[2025-11-23 18:02:20] 2025-11-23 23:01:43,641 | INFO     | event service: False
[2025-11-23 18:02:20] 2025-11-23 23:01:43,642 | INFO     | sizes: {0: 2298576, 1: 2298831, 2: 2298831, 13: 2298859, 23: 2298915, 31: 2299205, 34: 2299361, 64555: 2354483, 64560: 2363533, 64582: 2363723}
[2025-11-23 18:02:20] 2025-11-23 23:01:43,642 | INFO     | --------------------------------------------------
[2025-11-23 18:02:20] 2025-11-23 23:01:43,642 | INFO     | 
[2025-11-23 18:02:20] 2025-11-23 23:01:43,642 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 18:02:20] 2025-11-23 23:01:43,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,671 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | job 6895328078 has completed (purged errors)
[2025-11-23 18:02:20] 2025-11-23 23:01:43,672 | INFO     | overall cleanup function is called
[2025-11-23 18:02:20] 2025-11-23 23:01:44,708 | INFO     | --- collectZombieJob: --- 10, [505076]
[2025-11-23 18:02:20] 2025-11-23 23:01:44,708 | INFO     | zombie collector waiting for pid 505076
[2025-11-23 18:02:20] 2025-11-23 23:01:44,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 18:02:20] 2025-11-23 23:01:44,708 | INFO     | collected zombie processes
[2025-11-23 18:02:20] 2025-11-23 23:01:44,708 | INFO     | will attempt to kill all subprocesses of pid=505076
[2025-11-23 18:02:20] 2025-11-23 23:01:45,332 | INFO     | process IDs to be killed: [505076] (in reverse order)
[2025-11-23 18:02:20] 2025-11-23 23:01:45,452 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 18:02:20] 2025-11-23 23:01:45,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 18:02:20] 2025-11-23 23:01:45,466 | INFO     | did not find any defunct processes belonging to 505076
[2025-11-23 18:02:20] 2025-11-23 23:01:45,480 | INFO     | did not find any defunct processes belonging to 505076
[2025-11-23 18:02:20] 2025-11-23 23:01:45,481 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 18:02:20] 2025-11-23 23:01:45,481 | INFO     | ready for new job
[2025-11-23 18:02:20] 2025-11-23 23:01:45,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 18:02:20] 2025-11-23 23:01:45,519 | INFO     | ***************************************
[2025-11-23 18:02:20] 2025-11-23 23:01:45,519 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 18:02:20] 2025-11-23 23:01:45,519 | INFO     | ***************************************
[2025-11-23 18:02:20] 2025-11-23 23:01:45,519 | INFO     | 
[2025-11-23 18:02:20] 2025-11-23 23:01:45,526 | INFO     | architecture information:
[2025-11-23 18:02:20] 2025-11-23 23:01:45,529 | INFO     | executing command: cat /etc/os-release
[2025-11-23 18:02:20] 2025-11-23 23:01:45,594 | INFO     | cat /etc/os-release:
[2025-11-23 18:02:20] NAME="CentOS Linux"
[2025-11-23 18:02:20] VERSION="7 (Core)"
[2025-11-23 18:02:20] ID="centos"
[2025-11-23 18:02:20] ID_LIKE="rhel fedora"
[2025-11-23 18:02:20] VERSION_ID="7"
[2025-11-23 18:02:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 18:02:20] ANSI_COLOR="0;31"
[2025-11-23 18:02:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 18:02:20] HOME_URL="https://www.centos.org/"
[2025-11-23 18:02:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 18:02:20] 
[2025-11-23 18:02:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 18:02:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 18:02:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 18:02:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 18:02:20] 
[2025-11-23 18:02:20] 2025-11-23 23:01:45,594 | INFO     | ***************************************
[2025-11-23 18:02:20] 2025-11-23 23:01:46,102 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 18:02:20] 2025-11-23 23:01:46,189 | INFO     | sufficient remaining disk space (82484133888 B)
[2025-11-23 18:02:20] 2025-11-23 23:01:46,190 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 18:02:20] 2025-11-23 23:01:46,190 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 18:02:20] 2025-11-23 23:01:46,190 | INFO     | update_server=False
[2025-11-23 18:02:20] 2025-11-23 23:01:46,190 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 18:02:20] 2025-11-23 23:01:46,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 18:02:20] 2025-11-23 23:01:46,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 18:02:20] 2025-11-23 23:01:46,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:02:20] 2025-11-23 23:01:46,549 | INFO     | aborting loop
[2025-11-23 18:02:20] 2025-11-23 23:01:46,737 | INFO     | all job control threads have been joined
[2025-11-23 18:02:20] 2025-11-23 23:01:46,988 | INFO     | all data control threads have been joined
[2025-11-23 18:02:20] 2025-11-23 23:01:47,196 | INFO     | [job] retrieve thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,243 | INFO     | all payload control threads have been joined
[2025-11-23 18:02:20] 2025-11-23 23:01:47,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,555 | INFO     | [job] job monitor thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,737 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,745 | INFO     | [job] control thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,850 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:47,997 | INFO     | [data] control thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,200 | INFO     | [data] copytool_out thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,208 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,248 | INFO     | [payload] control thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,523 | INFO     | [data] copytool_in thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 18:02:20] 2025-11-23 23:01:48,665 | INFO     | [job] validate thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,712 | INFO     | [payload] failed_post thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:48,712 | INFO     | [payload] validate_post thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:49,661 | INFO     | [job] queue monitor thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:01:50,511 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 18:02:20] 2025-11-23 23:02:13,176 | INFO     | [monitor] cgroup control has ended
[2025-11-23 18:02:20] 2025-11-23 23:02:14,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638623008576)>', '<ExcThread(monitor, started 139638261913344)>']
[2025-11-23 18:02:20] 2025-11-23 23:02:15,989 | INFO     | PID=496821 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 18:02:20] 2025-11-23 23:02:15,989 | INFO     | .. there are 18 such processes running
[2025-11-23 18:02:20] 2025-11-23 23:02:15,989 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 18:02:20] 2025-11-23 23:02:15,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 18:02:20] 2025-11-23 23:02:15,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 18:02:20] 2025-11-23 23:02:15,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 18:02:20] 2025-11-23 23:02:15,990 | INFO     | [monitor] control thread has ended
[2025-11-23 18:02:20] 2025-11-23 23:02:19,801 | INFO     | all workflow threads have been joined
[2025-11-23 18:02:20] 2025-11-23 23:02:19,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 18:02:20] 2025-11-23 23:02:19,801 | INFO     | traces error code: 0
[2025-11-23 18:02:20] 2025-11-23 23:02:19,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 18:02:20] 2025-11-23 23:02:20,076 [wrapper] ==== pilot stdout END ====
[2025-11-23 18:02:20] 2025-11-23 23:02:20,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 18:02:20] 2025-11-23 23:02:20,119 [wrapper] pilotpid: 496821
[2025-11-23 18:02:20] 2025-11-23 23:02:20,137 [wrapper] Pilot exit status: 0
[2025-11-23 18:02:20] 2025-11-23 23:02:20,270 [wrapper] pandaids: 6895328078
[2025-11-23 18:02:20] 2025-11-23 23:02:20,495 [wrapper] cleanup supervisor_pilot 2696458 496822
[2025-11-23 18:02:20] 2025-11-23 23:02:20,499 [wrapper] Test setup, not cleaning
[2025-11-23 18:02:20] 2025-11-23 23:02:20,514 [wrapper] apfmon messages muted
[2025-11-23 18:02:20] 2025-11-23 23:02:20,535 [wrapper] ==== wrapper stdout END ====
[2025-11-23 18:02:20] 2025-11-23 23:02:20,550 [wrapper] ==== wrapper stderr END ====
[2025-11-23 18:02:20]  *** Error codes and diagnostics ***
[2025-11-23 18:02:20]     "exeErrorCode": 0,
[2025-11-23 18:02:20]     "exeErrorDiag": "",
[2025-11-23 18:02:20]     "pilotErrorCode": 0,
[2025-11-23 18:02:20]     "pilotErrorDiag": "",
[2025-11-23 18:02:20]  *** Listing of results directory ***
[2025-11-23 18:02:20] total 1329180
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 11:14 queuedata.json
[2025-11-23 18:02:20] -rwx------. 1 boincer umatlas     36292 Nov 21 11:16 runpilot2-wrapper.sh
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 11:16 pilot3.tar.gz
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 18:02:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:02 run_atlas
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:02 job.xml
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas 410094069 Nov 23 00:02 EVNT.47483658._000061.pool.root.1
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 18:02:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:02 shared
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:02 input.tar.gz
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:02 boinc_lockfile
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 00:02 pandaJob.out
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas        57 Nov 23 00:02 setup.sh.local
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas    989784 Nov 23 00:04 agis_schedconf.cvmfs.json
[2025-11-23 18:02:20] drwx------. 5 boincer umatlas      4096 Nov 23 00:04 pilot3
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas       533 Nov 23 17:45 boinc_task_state.xml
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas 925323531 Nov 23 18:00 HITS.47556137._000606.pool.root.1
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas      1050 Nov 23 18:01 memory_monitor_summary.json
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas   1526164 Nov 23 18:01 agis_ddmendpoints.agis.ALL.json
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas   2610434 Nov 23 18:01 log.47556137._000606.job.log.tgz.1
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas        95 Nov 23 18:01 pilot_heartbeat.json
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas      6903 Nov 23 18:01 init_data.xml
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas      8594 Nov 23 18:01 heartbeat.json
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas        29 Nov 23 18:02 wrapper_checkpoint.txt
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas      4823 Nov 23 18:02 pilotlog.txt
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas   8257164 Nov 23 18:02 log.47556137._000606.job.log.1
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas       353 Nov 23 18:02 output.list
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas       620 Nov 23 18:02 runtime_log
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas  10885120 Nov 23 18:02 result.tar.gz
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas       660 Nov 23 18:02 YnfNDmizig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlXJKDm1aVq2n.diag
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas      9345 Nov 23 18:02 runtime_log.err
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 18:02 boinc_mmap_file
[2025-11-23 18:02:20] -rw-r--r--. 1 boincer umatlas     21882 Nov 23 18:02 stderr.txt
[2025-11-23 18:02:20] HITS file was successfully produced:
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas 925323531 Nov 23 18:00 shared/HITS.pool.root.1
[2025-11-23 18:02:20]  *** Contents of shared directory: ***
[2025-11-23 18:02:20] total 1315360
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas 410094069 Nov 23 00:02 ATLAS.root_0
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 18:02:20] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:02 input.tar.gz
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas 925323531 Nov 23 18:00 HITS.pool.root.1
[2025-11-23 18:02:20] -rw-------. 1 boincer umatlas  10885120 Nov 23 18:02 result.tar.gz
18:02:22 (491673): run_atlas exited; CPU time 203249.208359
18:02:22 (491673): called boinc_finish(0)

</stderr_txt>
]]>

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