Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:22 (28433): wrapper (7.7.26015): starting
21:50:22 (28433): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:50:22] Arguments: --nthreads 8
[2025-11-25 21:50:22] Threads: 8
[2025-11-25 21:50:22] Checking for CVMFS
[2025-11-25 21:50:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:50:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:50:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:50:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:50:25] 2.11.2.0 21240 284266 143356 153297 2 84 14028647 25165824 4632 130560 114 132152231 99.875 83578927 3003 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 21:50:25] CVMFS is ok
[2025-11-25 21:50:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:50:25] Checking for apptainer binary...
[2025-11-25 21:50:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:50:25] Running /usr/bin/apptainer --version
[2025-11-25 21:50:25] apptainer version 1.3.2-1.el7
[2025-11-25 21:50:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:50:40] cg-vwn384.simple-grid.lan
[2025-11-25 21:50:40] apptainer works
[2025-11-25 21:50:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:50:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:50:40] Starting ATLAS job with PandaID=6895328053
[2025-11-25 21:50:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:12:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:12:09] 2025-11-26 21:10:53,813 | INFO     | time since job start (87385s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:10:55,507 | INFO     | monitor loop #5886: job 0:6895328053 is in state 'finished'
[2025-11-26 22:12:09] 2025-11-26 21:10:55,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:12:09] 2025-11-26 21:10:55,825 | INFO     | time since job start (87387s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:10:57,832 | INFO     | time since job start (87389s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:10:58,012 | INFO     | monitor loop #5887: job 0:6895328053 is in state 'finished'
[2025-11-26 22:12:09] 2025-11-26 21:10:58,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:12:09] 2025-11-26 21:10:59,843 | INFO     | time since job start (87391s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:11:00,517 | INFO     | monitor loop #5888: job 0:6895328053 is in state 'finished'
[2025-11-26 22:12:09] 2025-11-26 21:11:00,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:12:09] 2025-11-26 21:11:01,856 | INFO     | time since job start (87393s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,023 | INFO     | monitor loop #5889: job 0:6895328053 is in state 'finished'
[2025-11-26 22:12:09] 2025-11-26 21:11:03,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,569 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:12:09] 2025-11-26 21:11:03,570 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 22:12:09] 2025-11-26 21:11:03,572 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6895328053/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,573 | INFO     | extracted standard info from prmon json
[2025-11-26 22:12:09] 2025-11-26 21:11:03,573 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:12:09] 2025-11-26 21:11:03,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:12:09] 2025-11-26 21:11:03,599 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:12:09] 2025-11-26 21:11:03,601 | INFO     | sum of square deviations: 891609776340.113
[2025-11-26 22:12:09] 2025-11-26 21:11:03,657 | INFO     | sum of deviations: 3622275557859.0693
[2025-11-26 22:12:09] 2025-11-26 21:11:03,657 | INFO     | mean x: 1764147962.6336145
[2025-11-26 22:12:09] 2025-11-26 21:11:03,657 | INFO     | mean y: 2839404.6680731364
[2025-11-26 22:12:09] 2025-11-26 21:11:03,657 | INFO     | intersect: -7164231005.57943
[2025-11-26 22:12:09] 2025-11-26 21:11:03,659 | INFO     | chi2: 24.195658638054123
[2025-11-26 22:12:09] 2025-11-26 21:11:03,661 | INFO     | sum of square deviations: 882238082966.1653
[2025-11-26 22:12:09] 2025-11-26 21:11:03,717 | INFO     | sum of deviations: 4108705289563.9893
[2025-11-26 22:12:09] 2025-11-26 21:11:03,718 | INFO     | mean x: 1764147810.1376147
[2025-11-26 22:12:09] 2025-11-26 21:11:03,718 | INFO     | mean y: 2847319.728299224
[2025-11-26 22:12:09] 2025-11-26 21:11:03,718 | INFO     | intersect: -8213034060.8571825
[2025-11-26 22:12:09] 2025-11-26 21:11:03,719 | INFO     | chi2: 20.77773199961524
[2025-11-26 22:12:09] 2025-11-26 21:11:03,720 | INFO     | current chi2=20.77773199961524 (change=14.126197966205728 %)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,720 | INFO     | right removable region: 1416
[2025-11-26 22:12:09] 2025-11-26 21:11:03,722 | INFO     | sum of square deviations: 882237099646.1649
[2025-11-26 22:12:09] 2025-11-26 21:11:03,781 | INFO     | sum of deviations: 3020985192417.0356
[2025-11-26 22:12:09] 2025-11-26 21:11:03,782 | INFO     | mean x: 1764148115.1376147
[2025-11-26 22:12:09] 2025-11-26 21:11:03,782 | INFO     | mean y: 2849187.7741707833
[2025-11-26 22:12:09] 2025-11-26 21:11:03,782 | INFO     | intersect: -6038004609.009737
[2025-11-26 22:12:09] 2025-11-26 21:11:03,784 | INFO     | chi2: 19.376244682368224
[2025-11-26 22:12:09] 2025-11-26 21:11:03,784 | INFO     | current chi2=19.376244682368224 (change=19.918506984166516 %)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,784 | INFO     | left removable region: 10
[2025-11-26 22:12:09] 2025-11-26 21:11:03,786 | INFO     | sum of square deviations: 861850060363.3086
[2025-11-26 22:12:09] 2025-11-26 21:11:03,844 | INFO     | sum of deviations: 3116066348955.7314
[2025-11-26 22:12:09] 2025-11-26 21:11:03,845 | INFO     | mean x: 1764148084.646515
[2025-11-26 22:12:09] 2025-11-26 21:11:03,845 | INFO     | mean y: 2867464.719772404
[2025-11-26 22:12:09] 2025-11-26 21:11:03,845 | INFO     | intersect: -6375507073.91447
[2025-11-26 22:12:09] 2025-11-26 21:11:03,846 | INFO     | chi2: 11.650607390975491
[2025-11-26 22:12:09] 2025-11-26 21:11:03,847 | INFO     | current memory leak: 3.62 B/s (using 1406 data points, chi2=11.65)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | ..............................
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . Timing measurements:
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . get job = 0 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . initial setup = 10 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . payload setup = 175 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . stage-in = 0 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,848 | INFO     | . payload execution = 86910 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,849 | INFO     | . stage-out = 4 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,849 | INFO     | . log creation = 1 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,849 | INFO     | ..............................
[2025-11-26 22:12:09] 2025-11-26 21:11:03,862 | INFO     | time since job start (87395s) is within the limit (172800.0s)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,954 | INFO     | 
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | job summary report
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | --------------------------------------------------
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | PanDA job id: 6895328053
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | task id: 47556149
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | errors: (none)
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | pilot state: finished 
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | transexitcode: 0
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | exeerrorcode: 0
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | exeerrordiag: 
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | exitcode: 0
[2025-11-26 22:12:09] 2025-11-26 21:11:03,955 | INFO     | exitmsg: OK
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | cpuconsumptiontime: 328048 s
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | nevents: 1000
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | neventsw: 0
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | pid: 6338
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | pgrp: 6338
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | corecount: 8
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | event service: False
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284370, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 88: 2284722, 99: 2285320, 10
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | --------------------------------------------------
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | 
[2025-11-26 22:12:09] 2025-11-26 21:11:03,956 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,339 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,340 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:12:09] 2025-11-26 21:11:04,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:12:09] 2025-11-26 21:11:04,341 | INFO     | job 6895328053 has completed (purged errors)
[2025-11-26 22:12:09] 2025-11-26 21:11:04,341 | INFO     | overall cleanup function is called
[2025-11-26 22:12:09] 2025-11-26 21:11:05,365 | INFO     | --- collectZombieJob: --- 10, [6338]
[2025-11-26 22:12:09] 2025-11-26 21:11:05,365 | INFO     | zombie collector waiting for pid 6338
[2025-11-26 22:12:09] 2025-11-26 21:11:05,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:12:09] 2025-11-26 21:11:05,365 | INFO     | collected zombie processes
[2025-11-26 22:12:09] 2025-11-26 21:11:05,365 | INFO     | will attempt to kill all subprocesses of pid=6338
[2025-11-26 22:12:09] 2025-11-26 21:11:05,490 | INFO     | process IDs to be killed: [6338] (in reverse order)
[2025-11-26 22:12:09] 2025-11-26 21:11:06,449 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:12:09] 2025-11-26 21:11:06,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:12:09] 2025-11-26 21:11:06,452 | INFO     | did not find any defunct processes belonging to 6338
[2025-11-26 22:12:09] 2025-11-26 21:11:06,454 | INFO     | did not find any defunct processes belonging to 6338
[2025-11-26 22:12:09] 2025-11-26 21:11:06,513 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:12:09] 2025-11-26 21:11:06,514 | INFO     | ready for new job
[2025-11-26 22:12:09] 2025-11-26 21:11:06,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:12:09] 2025-11-26 21:11:06,519 | INFO     | ***************************************
[2025-11-26 22:12:09] 2025-11-26 21:11:06,519 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:12:09] 2025-11-26 21:11:06,519 | INFO     | ***************************************
[2025-11-26 22:12:09] 2025-11-26 21:11:06,519 | INFO     | 
[2025-11-26 22:12:09] 2025-11-26 21:11:06,520 | INFO     | pilot is running in a VM
[2025-11-26 22:12:09] 2025-11-26 21:11:06,520 | INFO     | architecture information:
[2025-11-26 22:12:09] 2025-11-26 21:11:06,535 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:12:09] 2025-11-26 21:11:06,823 | INFO     | cat /etc/os-release:
[2025-11-26 22:12:09] NAME="CentOS Linux"
[2025-11-26 22:12:09] VERSION="7 (Core)"
[2025-11-26 22:12:09] ID="centos"
[2025-11-26 22:12:09] ID_LIKE="rhel fedora"
[2025-11-26 22:12:09] VERSION_ID="7"
[2025-11-26 22:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:12:09] ANSI_COLOR="0;31"
[2025-11-26 22:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:12:09] HOME_URL="https://www.centos.org/"
[2025-11-26 22:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:12:09] 
[2025-11-26 22:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:12:09] 
[2025-11-26 22:12:09] 2025-11-26 21:11:06,824 | INFO     | ***************************************
[2025-11-26 22:12:09] 2025-11-26 21:11:07,328 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-26 22:12:09] 2025-11-26 21:11:07,574 | INFO     | sufficient remaining disk space (495285436416 B)
[2025-11-26 22:12:09] 2025-11-26 21:11:07,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:12:09] 2025-11-26 21:11:07,574 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:12:09] 2025-11-26 21:11:07,574 | INFO     | update_server=False
[2025-11-26 22:12:09] 2025-11-26 21:11:07,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:12:09] 2025-11-26 21:11:07,576 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:12:09] 2025-11-26 21:11:08,037 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 22:12:09] 2025-11-26 21:11:08,037 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 22:12:09] 2025-11-26 21:11:08,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:12:09] 2025-11-26 21:11:08,038 | INFO     | will abort loop
[2025-11-26 22:12:09] 2025-11-26 21:11:08,141 | INFO     | all job control threads have been joined
[2025-11-26 22:12:09] 2025-11-26 21:11:08,290 | INFO     | all data control threads have been joined
[2025-11-26 22:12:09] 2025-11-26 21:11:08,455 | INFO     | all payload control threads have been joined
[2025-11-26 22:12:09] 2025-11-26 21:11:08,580 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:08,630 | INFO     | [job] validate thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:08,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:12:09] 2025-11-26 21:11:09,043 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,147 | INFO     | [job] control thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,203 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,294 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,296 | INFO     | [data] control thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,461 | INFO     | [payload] control thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,583 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,671 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,816 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:09,980 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:10,033 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:10,040 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:10,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:12:09] 2025-11-26 21:11:14,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:12:09] 2025-11-26 21:11:37,025 | INFO     | PID=32168 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 22:12:09] 2025-11-26 21:11:37,026 | INFO     | .. there are 9 such processes running
[2025-11-26 22:12:09] 2025-11-26 21:11:37,026 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:12:09] 2025-11-26 21:11:37,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:12:09] 2025-11-26 21:11:37,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:12:09] 2025-11-26 21:12:00,307 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:12:09] 2025-11-26 21:12:00,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405407364928)>', '<ExcThread(monitor, started 140404821321472)>']
[2025-11-26 22:12:09] 2025-11-26 21:12:01,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:12:09] 2025-11-26 21:12:01,171 | INFO     | [monitor] control thread has ended
[2025-11-26 22:12:09] 2025-11-26 21:12:05,501 | INFO     | all workflow threads have been joined
[2025-11-26 22:12:09] 2025-11-26 21:12:05,501 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:12:09] 2025-11-26 21:12:05,501 | INFO     | traces error code: 0
[2025-11-26 22:12:09] 2025-11-26 21:12:05,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:12:09] 2025-11-26 21:12:05,813 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:12:09] 2025-11-26 21:12:05,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:12:09] 2025-11-26 21:12:05,939 [wrapper] pilotpid: 32168
[2025-11-26 22:12:09] 2025-11-26 21:12:06,026 [wrapper] Pilot exit status: 0
[2025-11-26 22:12:09] 2025-11-26 21:12:06,370 [wrapper] pandaids: 6895328053
[2025-11-26 22:12:09] 2025-11-26 21:12:07,274 [wrapper] cleanup supervisor_pilot 17544 32169
[2025-11-26 22:12:09] 2025-11-26 21:12:07,367 [wrapper] Test setup, not cleaning
[2025-11-26 22:12:09] 2025-11-26 21:12:07,468 [wrapper] apfmon messages muted
[2025-11-26 22:12:09] 2025-11-26 21:12:07,600 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:12:09] 2025-11-26 21:12:07,713 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:12:09]  *** Error codes and diagnostics ***
[2025-11-26 22:12:09]     "exeErrorCode": 0,
[2025-11-26 22:12:09]     "exeErrorDiag": "",
[2025-11-26 22:12:09]     "pilotErrorCode": 0,
[2025-11-26 22:12:09]     "pilotErrorDiag": "",
[2025-11-26 22:12:09]  *** Listing of results directory ***
[2025-11-26 22:12:09] total 1319816
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc    576529 Nov 21 16:53 pilot3.tar.gz
[2025-11-26 22:12:09] -rwx------. 1 boinc boinc     36292 Nov 21 17:14 runpilot2-wrapper.sh
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc      5112 Nov 21 17:14 queuedata.json
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc       100 Nov 25 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:12:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 21:50 run_atlas
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc       105 Nov 25 21:50 job.xml
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc 406933988 Nov 25 21:50 EVNT.47483658._001026.pool.root.1
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc      6393 Nov 25 21:50 init_data.xml
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:50 start_atlas.sh
[2025-11-26 22:12:09] drwxrwx--x. 2 boinc boinc        68 Nov 25 21:50 shared
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc    590100 Nov 25 21:50 input.tar.gz
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc         0 Nov 25 21:50 boinc_lockfile
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc      2785 Nov 25 21:50 pandaJob.out
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc    991893 Nov 25 21:54 agis_schedconf.cvmfs.json
[2025-11-26 22:12:09] drwx------. 5 boinc boinc      4096 Nov 25 21:54 pilot3
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc       533 Nov 26 21:47 boinc_task_state.xml
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc 912286241 Nov 26 22:08 HITS.47556149._000124.pool.root.1
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc      1031 Nov 26 22:09 memory_monitor_summary.json
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc   1516240 Nov 26 22:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc   2515824 Nov 26 22:09 log.47556149._000124.job.log.tgz.1
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc        95 Nov 26 22:10 pilot_heartbeat.json
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc      7954 Nov 26 22:11 heartbeat.json
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc      8192 Nov 26 22:11 boinc_mmap_file
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc        29 Nov 26 22:11 wrapper_checkpoint.txt
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc      5071 Nov 26 22:12 pilotlog.txt
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc  11665819 Nov 26 22:12 log.47556149._000124.job.log.1
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc       353 Nov 26 22:12 output.list
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc       620 Nov 26 22:12 runtime_log
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc  14202880 Nov 26 22:12 result.tar.gz
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc       662 Nov 26 22:12 XBlLDmFxig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPjHKDmJWBfmn.diag
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc      8833 Nov 26 22:12 runtime_log.err
[2025-11-26 22:12:09] -rw-r--r--. 1 boinc boinc     21353 Nov 26 22:12 stderr.txt
[2025-11-26 22:12:09] HITS file was successfully produced:
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc 912286241 Nov 26 22:08 shared/HITS.pool.root.1
[2025-11-26 22:12:09]  *** Contents of shared directory: ***
[2025-11-26 22:12:09] total 1302776
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc 406933988 Nov 25 21:50 ATLAS.root_0
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:50 start_atlas.sh
[2025-11-26 22:12:09] -rw-r--r--. 2 boinc boinc    590100 Nov 25 21:50 input.tar.gz
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc 912286241 Nov 26 22:08 HITS.pool.root.1
[2025-11-26 22:12:09] -rw-------. 1 boinc boinc  14202880 Nov 26 22:12 result.tar.gz
22:12:10 (28433): run_atlas exited; CPU time 328640.468653
22:12:10 (28433): called boinc_finish(0)

</stderr_txt>
]]>

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