Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:29:20 (1211146): wrapper (7.7.26015): starting
00:29:20 (1211146): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 00:29:20] Arguments: --nthreads 6
[2025-11-24 00:29:20] Threads: 6
[2025-11-24 00:29:20] Checking for CVMFS
[2025-11-24 00:29:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:29:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:29:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:29:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:29:21] 2.13.3.0 900246 1331 67392 153213 0 81 18304350 20971520 916 130560 0 1059929 99.988 47581 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-24 00:29:21] CVMFS is ok
[2025-11-24 00:29:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:29:21] Checking for apptainer binary...
[2025-11-24 00:29:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:29:21] Running /usr/bin/apptainer --version
[2025-11-24 00:29:21] apptainer version 1.4.4-1.el9
[2025-11-24 00:29:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:29:21] testio005
[2025-11-24 00:29:21] apptainer works
[2025-11-24 00:29:21] Set ATHENA_PROC_NUMBER=6
[2025-11-24 00:29:21] Set ATHENA_CORE_NUMBER=6
[2025-11-24 00:29:21] Starting ATLAS job with PandaID=6895335031
[2025-11-24 00:29:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:54:48]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:54:48] 2025-11-24 02:54:06,298 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:54:48] 2025-11-24 02:54:06,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:54:48] 2025-11-24 02:54:06,307 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:54:48] 2025-11-24 02:54:06,308 | INFO     | sum of square deviations: 94099290775.61984
[2025-11-24 11:54:48] 2025-11-24 02:54:06,316 | INFO     | sum of deviations: 839355472276.2388
[2025-11-24 11:54:48] 2025-11-24 02:54:06,316 | INFO     | mean x: 1763932264.5238094
[2025-11-24 11:54:48] 2025-11-24 02:54:06,316 | INFO     | mean y: 2658922.7038690476
[2025-11-24 11:54:48] 2025-11-24 02:54:06,316 | INFO     | intersect: -15731425646.361523
[2025-11-24 11:54:48] 2025-11-24 02:54:06,317 | INFO     | chi2: 10.595281844301802
[2025-11-24 11:54:48] 2025-11-24 02:54:06,317 | INFO     | sum of square deviations: 92014456565.61609
[2025-11-24 11:54:48] 2025-11-24 02:54:06,325 | INFO     | sum of deviations: 1051545189670.739
[2025-11-24 11:54:48] 2025-11-24 02:54:06,326 | INFO     | mean x: 1763932112.023988
[2025-11-24 11:54:48] 2025-11-24 02:54:06,326 | INFO     | mean y: 2674440.3913043477
[2025-11-24 11:54:48] 2025-11-24 02:54:06,326 | INFO     | intersect: -20155618033.81207
[2025-11-24 11:54:48] 2025-11-24 02:54:06,326 | INFO     | chi2: 7.2726849244979626
[2025-11-24 11:54:48] 2025-11-24 02:54:06,327 | INFO     | current chi2=7.2726849244979626 (change=31.359212228891764 %)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,327 | INFO     | sum of square deviations: 89960646193.11328
[2025-11-24 11:54:48] 2025-11-24 02:54:06,335 | INFO     | sum of deviations: 1196187303280.0947
[2025-11-24 11:54:48] 2025-11-24 02:54:06,335 | INFO     | mean x: 1763931959.5241692
[2025-11-24 11:54:48] 2025-11-24 02:54:06,335 | INFO     | mean y: 2685150.400302115
[2025-11-24 11:54:48] 2025-11-24 02:54:06,335 | INFO     | intersect: -23451937544.32101
[2025-11-24 11:54:48] 2025-11-24 02:54:06,336 | INFO     | chi2: 4.894696974607041
[2025-11-24 11:54:48] 2025-11-24 02:54:06,336 | INFO     | current chi2=4.894696974607041 (change=32.69752470481286 %)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,337 | INFO     | sum of square deviations: 87937627095.61127
[2025-11-24 11:54:48] 2025-11-24 02:54:06,345 | INFO     | sum of deviations: 1181533953808.4373
[2025-11-24 11:54:48] 2025-11-24 02:54:06,345 | INFO     | mean x: 1763931807.024353
[2025-11-24 11:54:48] 2025-11-24 02:54:06,345 | INFO     | mean y: 2684045.910197869
[2025-11-24 11:54:48] 2025-11-24 02:54:06,345 | INFO     | intersect: -23697583871.666573
[2025-11-24 11:54:48] 2025-11-24 02:54:06,346 | INFO     | chi2: 4.889678557323785
[2025-11-24 11:54:48] 2025-11-24 02:54:06,346 | INFO     | current chi2=4.889678557323785 (change=0.10252763979650824 %)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,346 | INFO     | right removable region: 656
[2025-11-24 11:54:48] 2025-11-24 02:54:06,346 | INFO     | sum of square deviations: 92014446805.61609
[2025-11-24 11:54:48] 2025-11-24 02:54:06,354 | INFO     | sum of deviations: 634408673863.7192
[2025-11-24 11:54:48] 2025-11-24 02:54:06,355 | INFO     | mean x: 1763932417.023988
[2025-11-24 11:54:48] 2025-11-24 02:54:06,355 | INFO     | mean y: 2673905.9550224887
[2025-11-24 11:54:48] 2025-11-24 02:54:06,355 | INFO     | intersect: -12159047044.598059
[2025-11-24 11:54:48] 2025-11-24 02:54:06,355 | INFO     | chi2: 7.795596566411013
[2025-11-24 11:54:48] 2025-11-24 02:54:06,355 | INFO     | current chi2=7.795596566411013 (change=26.42388677368195 %)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,356 | INFO     | sum of square deviations: 89960626673.11328
[2025-11-24 11:54:48] 2025-11-24 02:54:06,364 | INFO     | sum of deviations: 471240635774.87146
[2025-11-24 11:54:48] 2025-11-24 02:54:06,364 | INFO     | mean x: 1763932569.5241692
[2025-11-24 11:54:48] 2025-11-24 02:54:06,364 | INFO     | mean y: 2686017.5392749244
[2025-11-24 11:54:48] 2025-11-24 02:54:06,364 | INFO     | intersect: -9237319707.93224
[2025-11-24 11:54:48] 2025-11-24 02:54:06,365 | INFO     | chi2: 6.156392698098407
[2025-11-24 11:54:48] 2025-11-24 02:54:06,365 | INFO     | current chi2=6.156392698098407 (change=21.02730502211293 %)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,365 | INFO     | left removable region: 20
[2025-11-24 11:54:48] 2025-11-24 02:54:06,366 | INFO     | sum of square deviations: 79771900098.5974
[2025-11-24 11:54:48] 2025-11-24 02:54:06,373 | INFO     | sum of deviations: 737747773705.2133
[2025-11-24 11:54:48] 2025-11-24 02:54:06,373 | INFO     | mean x: 1763932386.5251572
[2025-11-24 11:54:48] 2025-11-24 02:54:06,373 | INFO     | mean y: 2718054.8616352202
[2025-11-24 11:54:48] 2025-11-24 02:54:06,373 | INFO     | intersect: -16310509905.322548
[2025-11-24 11:54:48] 2025-11-24 02:54:06,374 | INFO     | chi2: 0.18015603667332025
[2025-11-24 11:54:48] 2025-11-24 02:54:06,374 | INFO     | current memory leak: 9.25 B/s (using 636 data points, chi2=0.18)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | could have reported an average CPU frequency of 3304 MHz (25 samples)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | ..............................
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . Timing measurements:
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . get job = 0 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . initial setup = 5 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . payload setup = 5 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . stage-in = 0 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . payload execution = 40963 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . stage-out = 7 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | . log creation = 0 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,375 | INFO     | ..............................
[2025-11-24 11:54:48] 2025-11-24 02:54:06,549 | INFO     | time since job start (41073s) is within the limit (172800.0s)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,827 | INFO     | 
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | job summary report
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | --------------------------------------------------
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | PanDA job id: 6895335031
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | task id: 47556137
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | errors: (none)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | pilot state: finished 
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | transexitcode: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | exeerrorcode: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | exeerrordiag: 
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | exitcode: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | exitmsg: OK
[2025-11-24 11:54:48] 2025-11-24 02:54:06,828 | INFO     | cpuconsumptiontime: 230012 s
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | nevents: 1000
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | neventsw: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | pid: 1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | pgrp: 1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | corecount: 6
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | event service: False
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | sizes: {0: 2298806, 5: 2299068, 11: 2299124, 40972: 2342582, 40973: 2342581, 40981: 2351631, 40982: 2351815, 41058: 2352125}
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | --------------------------------------------------
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | 
[2025-11-24 11:54:48] 2025-11-24 02:54:06,829 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 11:54:48] 2025-11-24 02:54:06,849 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,849 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,849 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,849 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,850 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | job 6895335031 has completed (purged errors)
[2025-11-24 11:54:48] 2025-11-24 02:54:06,851 | INFO     | overall cleanup function is called
[2025-11-24 11:54:48] 2025-11-24 02:54:07,869 | INFO     | --- collectZombieJob: --- 10, [1221611]
[2025-11-24 11:54:48] 2025-11-24 02:54:07,869 | INFO     | zombie collector waiting for pid 1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:07,869 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:54:48] 2025-11-24 02:54:07,869 | INFO     | collected zombie processes
[2025-11-24 11:54:48] 2025-11-24 02:54:07,869 | INFO     | will attempt to kill all subprocesses of pid=1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:07,958 | INFO     | process IDs to be killed: [1221611] (in reverse order)
[2025-11-24 11:54:48] 2025-11-24 02:54:08,000 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:54:48] 2025-11-24 02:54:08,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:54:48] 2025-11-24 02:54:08,004 | INFO     | did not find any defunct processes belonging to 1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:08,007 | INFO     | did not find any defunct processes belonging to 1221611
[2025-11-24 11:54:48] 2025-11-24 02:54:08,009 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:54:48] 2025-11-24 02:54:08,009 | INFO     | ready for new job
[2025-11-24 11:54:48] 2025-11-24 02:54:08,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:54:48] 2025-11-24 02:54:08,012 | INFO     | ***************************************
[2025-11-24 11:54:48] 2025-11-24 02:54:08,012 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:54:48] 2025-11-24 02:54:08,012 | INFO     | ***************************************
[2025-11-24 11:54:48] 2025-11-24 02:54:08,012 | INFO     | 
[2025-11-24 11:54:48] 2025-11-24 02:54:08,013 | INFO     | architecture information:
[2025-11-24 11:54:48] 2025-11-24 02:54:08,014 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:54:48] 2025-11-24 02:54:08,027 | INFO     | cat /etc/os-release:
[2025-11-24 11:54:48] NAME="CentOS Linux"
[2025-11-24 11:54:48] VERSION="7 (Core)"
[2025-11-24 11:54:48] ID="centos"
[2025-11-24 11:54:48] ID_LIKE="rhel fedora"
[2025-11-24 11:54:48] VERSION_ID="7"
[2025-11-24 11:54:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:54:48] ANSI_COLOR="0;31"
[2025-11-24 11:54:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:54:48] HOME_URL="https://www.centos.org/"
[2025-11-24 11:54:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:54:48] 
[2025-11-24 11:54:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:54:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:54:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:54:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:54:48] 
[2025-11-24 11:54:48] 2025-11-24 02:54:08,028 | INFO     | ***************************************
[2025-11-24 11:54:48] 2025-11-24 02:54:08,530 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 11:54:48] 2025-11-24 02:54:08,546 | INFO     | sufficient remaining disk space (91379204096 B)
[2025-11-24 11:54:48] 2025-11-24 02:54:08,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:54:48] 2025-11-24 02:54:08,546 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:54:48] 2025-11-24 02:54:08,546 | INFO     | update_server=False
[2025-11-24 11:54:48] 2025-11-24 02:54:08,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:54:48] 2025-11-24 02:54:08,547 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 11:54:48] 2025-11-24 02:54:08,547 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:54:48] 2025-11-24 02:54:08,547 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:54:48] 2025-11-24 02:54:08,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:54:48] 2025-11-24 02:54:08,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:54:48] 2025-11-24 02:54:08,742 | INFO     | all data control threads have been joined
[2025-11-24 11:54:48] 2025-11-24 02:54:09,186 | INFO     | all payload control threads have been joined
[2025-11-24 11:54:48] 2025-11-24 02:54:09,194 | INFO     | all job control threads have been joined
[2025-11-24 11:54:48] 2025-11-24 02:54:09,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:54:48] 2025-11-24 02:54:09,505 | INFO     | aborting loop
[2025-11-24 11:54:48] 2025-11-24 02:54:09,552 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:09,558 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:54:48] 2025-11-24 02:54:09,612 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:09,744 | INFO     | [data] control thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:09,896 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,187 | INFO     | [payload] control thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,195 | INFO     | [job] validate thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,199 | INFO     | [job] control thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,273 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,506 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,645 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:10,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:11,035 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:11,458 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:54:48] 2025-11-24 02:54:11,563 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:12,463 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:12,549 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:54:48] 2025-11-24 02:54:42,398 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:54:48] 2025-11-24 02:54:42,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462606812992)>', '<ExcThread(monitor, started 140461738030848)>']
[2025-11-24 11:54:48] 2025-11-24 02:54:43,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:54:48] 2025-11-24 02:54:43,691 | INFO     | [monitor] control thread has ended
[2025-11-24 11:54:48] 2025-11-24 02:54:48,015 | INFO     | all workflow threads have been joined
[2025-11-24 11:54:48] 2025-11-24 02:54:48,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:54:48] 2025-11-24 02:54:48,015 | INFO     | traces error code: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:48,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:54:48] 2025-11-24 02:54:48,111 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:54:48] 2025-11-24 02:54:48,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:54:48] 2025-11-24 02:54:48,115 [wrapper] pilotpid: 1214915
[2025-11-24 11:54:48] 2025-11-24 02:54:48,117 [wrapper] Pilot exit status: 0
[2025-11-24 11:54:48] 2025-11-24 02:54:48,126 [wrapper] pandaids: 6895335031
[2025-11-24 11:54:48] 2025-11-24 02:54:48,151 [wrapper] cleanup supervisor_pilot 1355067 1214916
[2025-11-24 11:54:48] 2025-11-24 02:54:48,154 [wrapper] Test setup, not cleaning
[2025-11-24 11:54:48] 2025-11-24 02:54:48,156 [wrapper] apfmon messages muted
[2025-11-24 11:54:48] 2025-11-24 02:54:48,158 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:54:48] 2025-11-24 02:54:48,160 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:54:48]  *** Error codes and diagnostics ***
[2025-11-24 11:54:48]     "exeErrorCode": 0,
[2025-11-24 11:54:48]     "exeErrorDiag": "",
[2025-11-24 11:54:48]     "pilotErrorCode": 0,
[2025-11-24 11:54:48]     "pilotErrorDiag": "",
[2025-11-24 11:54:48]  *** Listing of results directory ***
[2025-11-24 11:54:48] total 1320264
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc    576529 Nov 22 12:55 pilot3.tar.gz
[2025-11-24 11:54:48] -rwx------. 1 boinc boinc     36292 Nov 22 13:06 runpilot2-wrapper.sh
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc      5112 Nov 22 13:06 queuedata.json
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:54:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:29 run_atlas
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:29 job.xml
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc 411766144 Nov 24 00:29 EVNT.47483658._000246.pool.root.1
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:29 start_atlas.sh
[2025-11-24 11:54:48] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:29 shared
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc    590095 Nov 24 00:29 input.tar.gz
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:29 boinc_lockfile
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc      2785 Nov 24 00:29 pandaJob.out
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc    989785 Nov 24 00:29 agis_schedconf.cvmfs.json
[2025-11-24 11:54:48] drwx------. 5 boinc boinc      4096 Nov 24 00:29 pilot3
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc      9372 Nov 24 07:04 init_data.xml
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc       533 Nov 24 11:43 boinc_task_state.xml
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc 921468576 Nov 24 11:52 HITS.47556137._002423.pool.root.1
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc      1033 Nov 24 11:52 memory_monitor_summary.json
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc   1526164 Nov 24 11:52 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc   1696476 Nov 24 11:52 log.47556137._002423.job.log.tgz.1
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc        95 Nov 24 11:53 pilot_heartbeat.json
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc      8577 Nov 24 11:54 heartbeat.json
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc      8192 Nov 24 11:54 boinc_mmap_file
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc        29 Nov 24 11:54 wrapper_checkpoint.txt
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc      4552 Nov 24 11:54 pilotlog.txt
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc   5703504 Nov 24 11:54 log.47556137._002423.job.log.1
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc       353 Nov 24 11:54 output.list
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc       620 Nov 24 11:54 runtime_log
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc   7424000 Nov 24 11:54 result.tar.gz
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc      8776 Nov 24 11:54 runtime_log.err
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc       652 Nov 24 11:54 K84NDmd4tg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUvJKDmWdAtNn.diag
[2025-11-24 11:54:48] -rw-r--r--. 1 boinc boinc     20753 Nov 24 11:54 stderr.txt
[2025-11-24 11:54:48] HITS file was successfully produced:
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc 921468576 Nov 24 11:52 shared/HITS.pool.root.1
[2025-11-24 11:54:48]  *** Contents of shared directory: ***
[2025-11-24 11:54:48] total 1309836
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc 411766144 Nov 24 00:29 ATLAS.root_0
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc     15847 Nov 24 00:29 start_atlas.sh
[2025-11-24 11:54:48] -rw-r--r--. 2 boinc boinc    590095 Nov 24 00:29 input.tar.gz
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc 921468576 Nov 24 11:52 HITS.pool.root.1
[2025-11-24 11:54:48] -rw-------. 1 boinc boinc   7424000 Nov 24 11:54 result.tar.gz
11:54:49 (1211146): run_atlas exited; CPU time 230022.198723
11:54:49 (1211146): called boinc_finish(0)

</stderr_txt>
]]>

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