Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:16 (2093921): wrapper (7.7.26015): starting
22:00:16 (2093921): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:00:17] Arguments: --nthreads 8
[2025-11-22 22:00:17] Threads: 8
[2025-11-22 22:00:17] Checking for CVMFS
[2025-11-22 22:00:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:00:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:00:19] 2.13.3.0 5206 2249 230980 153193 2 640 25581149 40960000 47007 16776704 0 20131473 99.825 7246221 25516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 22:00:19] CVMFS is ok
[2025-11-22 22:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:00:19] Further information can be found at the LHC@home message board.
[2025-11-22 22:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:00:19] Checking for apptainer binary...
[2025-11-22 22:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:00:19] Running /usr/bin/apptainer --version
[2025-11-22 22:00:19] apptainer version 1.4.4-1.el9
[2025-11-22 22:00:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:00:20] lc-12-9.aglt2.org
[2025-11-22 22:00:20] apptainer works
[2025-11-22 22:00:20] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:00:20] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:00:20] Starting ATLAS job with PandaID=6895334531
[2025-11-22 22:00:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:21:44]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:21:44] 2025-11-24 10:21:05,425 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2711.159302083334
[2025-11-24 05:21:44] 2025-11-24 10:21:05,582 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895334531/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:21:44] 2025-11-24 10:21:05,616 | INFO     | extracted standard info from prmon json
[2025-11-24 05:21:44] 2025-11-24 10:21:05,616 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:21:44] 2025-11-24 10:21:05,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:21:44] 2025-11-24 10:21:05,782 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:21:44] 2025-11-24 10:21:05,833 | INFO     | sum of square deviations: 1950567267931.9756
[2025-11-24 05:21:44] 2025-11-24 10:21:05,931 | INFO     | time since job start (112763s) is within the limit (172800.0s)
[2025-11-24 05:21:44] 2025-11-24 10:21:06,038 | INFO     | sum of deviations: 8736949922774.207
[2025-11-24 05:21:44] 2025-11-24 10:21:06,038 | INFO     | mean x: 1763923326.5855904
[2025-11-24 05:21:44] 2025-11-24 10:21:06,038 | INFO     | mean y: 2881321.3531961
[2025-11-24 05:21:44] 2025-11-24 10:21:06,038 | INFO     | intersect: -7898056024.08423
[2025-11-24 05:21:44] 2025-11-24 10:21:06,041 | INFO     | chi2: 16.295735924082486
[2025-11-24 05:21:44] 2025-11-24 10:21:06,055 | INFO     | sum of square deviations: 1934762322940.7917
[2025-11-24 05:21:44] 2025-11-24 10:21:06,342 | INFO     | sum of deviations: 9357802731702.596
[2025-11-24 05:21:44] 2025-11-24 10:21:06,342 | INFO     | mean x: 1763923174.0966866
[2025-11-24 05:21:44] 2025-11-24 10:21:06,342 | INFO     | mean y: 2887310.8506246605
[2025-11-24 05:21:44] 2025-11-24 10:21:06,342 | INFO     | intersect: -8528623201.503208
[2025-11-24 05:21:44] 2025-11-24 10:21:06,352 | INFO     | chi2: 13.178843464125142
[2025-11-24 05:21:44] 2025-11-24 10:21:06,352 | INFO     | current chi2=13.178843464125142 (change=19.127043261366772 %)
[2025-11-24 05:21:44] 2025-11-24 10:21:06,352 | INFO     | right removable region: 1840
[2025-11-24 05:21:44] 2025-11-24 10:21:06,359 | INFO     | sum of square deviations: 1934757722320.7883
[2025-11-24 05:21:44] 2025-11-24 10:21:06,600 | INFO     | sum of deviations: 7997931265932.318
[2025-11-24 05:21:44] 2025-11-24 10:21:06,600 | INFO     | mean x: 1763923479.0966866
[2025-11-24 05:21:44] 2025-11-24 10:21:06,600 | INFO     | mean y: 2888449.6442151004
[2025-11-24 05:21:44] 2025-11-24 10:21:06,600 | INFO     | intersect: -7288845590.9657545
[2025-11-24 05:21:44] 2025-11-24 10:21:06,607 | INFO     | chi2: 12.106830493488484
[2025-11-24 05:21:44] 2025-11-24 10:21:06,607 | INFO     | current chi2=12.106830493488484 (change=25.705530883103417 %)
[2025-11-24 05:21:44] 2025-11-24 10:21:06,616 | INFO     | sum of square deviations: 1919033806221.648
[2025-11-24 05:21:44] 2025-11-24 10:21:06,778 | INFO     | sum of deviations: 7326395483653.6455
[2025-11-24 05:21:44] 2025-11-24 10:21:06,778 | INFO     | mean x: 1763923631.6078432
[2025-11-24 05:21:44] 2025-11-24 10:21:06,778 | INFO     | mean y: 2894963.2467320263
[2025-11-24 05:21:44] 2025-11-24 10:21:06,778 | INFO     | intersect: -6731328314.229503
[2025-11-24 05:21:44] 2025-11-24 10:21:06,789 | INFO     | chi2: 8.761371098828409
[2025-11-24 05:21:44] 2025-11-24 10:21:06,789 | INFO     | current chi2=8.761371098828409 (change=27.632825919710292 %)
[2025-11-24 05:21:44] 2025-11-24 10:21:06,791 | INFO     | sum of square deviations: 1903395287072.0435
[2025-11-24 05:21:44] 2025-11-24 10:21:06,952 | INFO     | sum of deviations: 6808176321951.21
[2025-11-24 05:21:44] 2025-11-24 10:21:06,957 | INFO     | mean x: 1763923784.1190605
[2025-11-24 05:21:44] 2025-11-24 10:21:06,957 | INFO     | mean y: 2900016.3063899507
[2025-11-24 05:21:44] 2025-11-24 10:21:06,957 | INFO     | intersect: -6306406422.735676
[2025-11-24 05:21:44] 2025-11-24 10:21:06,959 | INFO     | chi2: 6.885282111109765
[2025-11-24 05:21:44] 2025-11-24 10:21:06,960 | INFO     | current chi2=6.885282111109765 (change=21.413189403306053 %)
[2025-11-24 05:21:44] 2025-11-24 10:21:06,960 | INFO     | left removable region: 30
[2025-11-24 05:21:44] 2025-11-24 10:21:06,966 | INFO     | sum of square deviations: 1838649976568.5203
[2025-11-24 05:21:44] 2025-11-24 10:21:07,178 | INFO     | sum of deviations: 6956191361898.132
[2025-11-24 05:21:44] 2025-11-24 10:21:07,179 | INFO     | mean x: 1763924058.6486187
[2025-11-24 05:21:44] 2025-11-24 10:21:07,179 | INFO     | mean y: 2913568.391712707
[2025-11-24 05:21:44] 2025-11-24 10:21:07,179 | INFO     | intersect: -6670566134.752071
[2025-11-24 05:21:44] 2025-11-24 10:21:07,189 | INFO     | chi2: 2.063233203425348
[2025-11-24 05:21:44] 2025-11-24 10:21:07,190 | INFO     | current memory leak: 3.78 B/s (using 1810 data points, chi2=2.06)
[2025-11-24 05:21:44] 2025-11-24 10:21:07,191 | INFO     | could have reported an average CPU frequency of 2692 MHz (64 samples)
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | ..............................
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . Timing measurements:
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . get job = 0 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . initial setup = 7 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . payload setup = 49 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . stage-in = 0 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . payload execution = 112610 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . stage-out = 8 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | . log creation = 1 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,192 | INFO     | ..............................
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | 
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | job summary report
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | --------------------------------------------------
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | PanDA job id: 6895334531
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | task id: 47556149
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | errors: (none)
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:21:44] 2025-11-24 10:21:07,861 | INFO     | pilot state: finished 
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | transexitcode: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | exeerrorcode: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | exeerrordiag: 
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | exitcode: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | exitmsg: OK
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | cpuconsumptiontime: 254828 s
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | nevents: 1000
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | neventsw: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | pid: 2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | pgrp: 2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | corecount: 8
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | event service: False
[2025-11-24 05:21:44] 2025-11-24 10:21:07,862 | INFO     | sizes: {0: 2298578, 1: 2298662, 2: 2298861, 3: 2298861, 14: 2298889, 24: 2298917, 32: 2299335, 35: 2299363, 112664: 2372523, 112674: 2381517, 112675: 2381573, 1126
[2025-11-24 05:21:44] 2025-11-24 10:21:07,863 | INFO     | --------------------------------------------------
[2025-11-24 05:21:44] 2025-11-24 10:21:07,863 | INFO     | 
[2025-11-24 05:21:44] 2025-11-24 10:21:07,863 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-24 05:21:44] 2025-11-24 10:21:07,954 | INFO     | time since job start (112765s) is within the limit (172800.0s)
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:21:44] 2025-11-24 10:21:08,009 | INFO     | job 6895334531 has completed (purged errors)
[2025-11-24 05:21:44] 2025-11-24 10:21:08,010 | INFO     | overall cleanup function is called
[2025-11-24 05:21:44] 2025-11-24 10:21:09,051 | INFO     | --- collectZombieJob: --- 10, [2130629]
[2025-11-24 05:21:44] 2025-11-24 10:21:09,052 | INFO     | zombie collector waiting for pid 2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:09,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:21:44] 2025-11-24 10:21:09,052 | INFO     | collected zombie processes
[2025-11-24 05:21:44] 2025-11-24 10:21:09,052 | INFO     | will attempt to kill all subprocesses of pid=2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:10,994 | INFO     | process IDs to be killed: [2130629] (in reverse order)
[2025-11-24 05:21:44] 2025-11-24 10:21:11,514 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:21:44] 2025-11-24 10:21:11,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:21:44] 2025-11-24 10:21:11,556 | INFO     | did not find any defunct processes belonging to 2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:11,615 | INFO     | did not find any defunct processes belonging to 2130629
[2025-11-24 05:21:44] 2025-11-24 10:21:11,616 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:21:44] 2025-11-24 10:21:11,616 | INFO     | ready for new job
[2025-11-24 05:21:44] 2025-11-24 10:21:11,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:21:44] 2025-11-24 10:21:11,626 | INFO     | ***************************************
[2025-11-24 05:21:44] 2025-11-24 10:21:11,626 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:21:44] 2025-11-24 10:21:11,626 | INFO     | ***************************************
[2025-11-24 05:21:44] 2025-11-24 10:21:11,627 | INFO     | 
[2025-11-24 05:21:44] 2025-11-24 10:21:11,640 | INFO     | architecture information:
[2025-11-24 05:21:44] 2025-11-24 10:21:11,645 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:21:44] 2025-11-24 10:21:11,719 | INFO     | cat /etc/os-release:
[2025-11-24 05:21:44] NAME="CentOS Linux"
[2025-11-24 05:21:44] VERSION="7 (Core)"
[2025-11-24 05:21:44] ID="centos"
[2025-11-24 05:21:44] ID_LIKE="rhel fedora"
[2025-11-24 05:21:44] VERSION_ID="7"
[2025-11-24 05:21:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:21:44] ANSI_COLOR="0;31"
[2025-11-24 05:21:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:21:44] HOME_URL="https://www.centos.org/"
[2025-11-24 05:21:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:21:44] 
[2025-11-24 05:21:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:21:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:21:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:21:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:21:44] 
[2025-11-24 05:21:44] 2025-11-24 10:21:11,719 | INFO     | ***************************************
[2025-11-24 05:21:44] 2025-11-24 10:21:12,223 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-24 05:21:44] 2025-11-24 10:21:12,305 | INFO     | sufficient remaining disk space (415486705664 B)
[2025-11-24 05:21:44] 2025-11-24 10:21:12,305 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:21:44] 2025-11-24 10:21:12,306 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:21:44] 2025-11-24 10:21:12,306 | INFO     | update_server=False
[2025-11-24 05:21:44] 2025-11-24 10:21:12,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:21:44] 2025-11-24 10:21:12,371 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 05:21:44] 2025-11-24 10:21:12,371 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 05:21:44] 2025-11-24 10:21:12,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:21:44] 2025-11-24 10:21:12,371 | INFO     | will abort loop
[2025-11-24 05:21:44] 2025-11-24 10:21:12,406 | INFO     | all payload control threads have been joined
[2025-11-24 05:21:44] 2025-11-24 10:21:12,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:21:44] 2025-11-24 10:21:12,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:21:44] 2025-11-24 10:21:13,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:21:44] 2025-11-24 10:21:13,310 | INFO     | all job control threads have been joined
[2025-11-24 05:21:44] 2025-11-24 10:21:13,312 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,346 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,346 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,376 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,376 | INFO     | all data control threads have been joined
[2025-11-24 05:21:44] 2025-11-24 10:21:13,412 | INFO     | [payload] control thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,504 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,522 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,525 | INFO     | [job] validate thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:13,525 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:14,006 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:14,344 | INFO     | [job] control thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:14,383 | INFO     | [data] control thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:14,471 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:14,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:15,158 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:16,801 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:21:44] 2025-11-24 10:21:17,350 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:21:44] 2025-11-24 10:21:19,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151101515584)>', '<ExcThread(monitor, started 140150579373824)>']
[2025-11-24 05:21:44] 2025-11-24 10:21:24,260 | INFO     | all workflow threads have been joined
[2025-11-24 05:21:44] 2025-11-24 10:21:24,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:21:44] 2025-11-24 10:21:24,271 | INFO     | traces error code: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:24,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | INFO     | PID=2110000 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | INFO     | .. there are 81 such processes running
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:21:44] 2025-11-24 10:21:43,038 | INFO     | [monitor] control thread has ended
[2025-11-24 05:21:44] 2025-11-24 10:21:43,456 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:21:44] 2025-11-24 10:21:43,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:21:44] 2025-11-24 10:21:43,499 [wrapper] pilotpid: 2110000
[2025-11-24 05:21:44] 2025-11-24 10:21:43,527 [wrapper] Pilot exit status: 0
[2025-11-24 05:21:44] 2025-11-24 10:21:43,639 [wrapper] pandaids: 6895334531
[2025-11-24 05:21:44] 2025-11-24 10:21:43,850 [wrapper] cleanup supervisor_pilot 3397699 2110001
[2025-11-24 05:21:44] 2025-11-24 10:21:43,877 [wrapper] Test setup, not cleaning
[2025-11-24 05:21:44] 2025-11-24 10:21:43,900 [wrapper] apfmon messages muted
[2025-11-24 05:21:44] 2025-11-24 10:21:43,920 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:21:44] 2025-11-24 10:21:43,945 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:21:44]  *** Error codes and diagnostics ***
[2025-11-24 05:21:44]     "exeErrorCode": 0,
[2025-11-24 05:21:44]     "exeErrorDiag": "",
[2025-11-24 05:21:44]     "pilotErrorCode": 0,
[2025-11-24 05:21:44]     "pilotErrorDiag": "",
[2025-11-24 05:21:44]  *** Listing of results directory ***
[2025-11-24 05:21:44] total 1328808
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 22:55 pilot3.tar.gz
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 22:57 queuedata.json
[2025-11-24 05:21:44] -rwx------. 1 boincer umatlas     36292 Nov 21 22:57 runpilot2-wrapper.sh
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas       100 Nov 22 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:21:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 22:00 run_atlas
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas       105 Nov 22 22:00 job.xml
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas 411576593 Nov 22 22:00 EVNT.47483658._001062.pool.root.1
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:00 start_atlas.sh
[2025-11-24 05:21:44] drwxrwx--x. 2 boincer umatlas        68 Nov 22 22:00 shared
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas    590102 Nov 22 22:00 input.tar.gz
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas         0 Nov 22 22:00 boinc_lockfile
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 22:00 pandaJob.out
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas    989784 Nov 22 22:01 agis_schedconf.cvmfs.json
[2025-11-24 05:21:44] drwx------. 5 boincer umatlas      4096 Nov 22 22:01 pilot3
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas       533 Nov 24 05:06 boinc_task_state.xml
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas 915379386 Nov 24 05:19 HITS.47556149._000484.pool.root.1
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas      1059 Nov 24 05:20 memory_monitor_summary.json
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas   1526164 Nov 24 05:20 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas   2630510 Nov 24 05:20 log.47556149._000484.job.log.tgz.1
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas        95 Nov 24 05:20 pilot_heartbeat.json
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas      6800 Nov 24 05:21 init_data.xml
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas      7946 Nov 24 05:21 heartbeat.json
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 05:21 boinc_mmap_file
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas        29 Nov 24 05:21 wrapper_checkpoint.txt
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas       823 Nov 24 05:21 pilotlog.txt
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas  12285494 Nov 24 05:21 log.47556149._000484.job.log.1
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas       353 Nov 24 05:21 output.list
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas       620 Nov 24 05:21 runtime_log
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas  14940160 Nov 24 05:21 result.tar.gz
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas      8814 Nov 24 05:21 runtime_log.err
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas       662 Nov 24 05:21 MebKDm9vtg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmuJKDmb6BQRn.diag
[2025-11-24 05:21:44] -rw-r--r--. 1 boincer umatlas     21384 Nov 24 05:21 stderr.txt
[2025-11-24 05:21:44] HITS file was successfully produced:
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas 915379386 Nov 24 05:19 shared/HITS.pool.root.1
[2025-11-24 05:21:44]  *** Contents of shared directory: ***
[2025-11-24 05:21:44] total 1311048
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas 411576593 Nov 22 22:00 ATLAS.root_0
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:00 start_atlas.sh
[2025-11-24 05:21:44] -rw-r--r--. 2 boincer umatlas    590102 Nov 22 22:00 input.tar.gz
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas 915379386 Nov 24 05:19 HITS.pool.root.1
[2025-11-24 05:21:44] -rw-------. 1 boincer umatlas  14940160 Nov 24 05:21 result.tar.gz
05:21:45 (2093921): run_atlas exited; CPU time 260390.200221
05:21:45 (2093921): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN