Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
20:24:01 (83583): wrapper (7.7.26015): starting
20:24:01 (83583): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 20:24:01] Arguments: --nthreads 12
[2025-11-22 20:24:01] Threads: 12
[2025-11-22 20:24:01] Checking for CVMFS
[2025-11-22 20:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:24:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:24:01] 2.13.3.0 3274 234 44712 153192 1 81 2168341 4096000 1302 130560 0 281669 99.982 10780 1083 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 20:24:01] CVMFS is ok
[2025-11-22 20:24:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:24:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 20:24:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 20:24:01] Further information can be found at the LHC@home message board.
[2025-11-22 20:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:24:01] Checking for apptainer binary...
[2025-11-22 20:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:24:01] Running /usr/bin/apptainer --version
[2025-11-22 20:24:01] apptainer version 1.4.4
[2025-11-22 20:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:24:01] zhiwei-Z790-Riptide-WiFi
[2025-11-22 20:24:01] apptainer works
[2025-11-22 20:24:01] Set ATHENA_PROC_NUMBER=12
[2025-11-22 20:24:01] Set ATHENA_CORE_NUMBER=12
[2025-11-22 20:24:01] Starting ATLAS job with PandaID=6893935694
[2025-11-22 20:24:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 21:49:23]  *** The last 200 lines of the pilot log: ***
[2025-11-22 21:49:23] 2025-11-23 02:48:39,384 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3799601 B
[2025-11-22 21:49:23] 2025-11-23 02:48:39,384 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16882 B
[2025-11-22 21:49:23] 2025-11-23 02:48:39,384 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | sufficient remaining disk space (1810459787264 B)
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | size of work directory /var/lib/boinc/slots/31/PanDA_Pilot-6893935694: 4100707 B (within 2537553920 B limit)
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | pfn file=/var/lib/boinc/slots/31/PanDA_Pilot-6893935694/HITS.47523642._000078.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | total size of present files: 0 B (workdir size: 4100707 B)
[2025-11-22 21:49:23] 2025-11-23 02:48:39,390 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/31/PanDA_Pilot-6893935694/HITS.47523642._000078.pool.root.1 since it does not exist
[2025-11-22 21:49:23] 2025-11-23 02:48:39,426 | INFO     | number of running child processes to parent process 94106: 1
[2025-11-22 21:49:23] 2025-11-23 02:48:39,426 | INFO     | maximum number of monitored processes: 6
[2025-11-22 21:49:23] 2025-11-23 02:48:40,051 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | job 6893935694 has state=finished
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | preparing for final server update for job 6893935694 in state='finished'
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | this job has now completed (state=finished)
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | log transfer has been attempted: DONE
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | job 6893935694 has finished - writing final server update
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | total number of processed events: 400 (read)
[2025-11-22 21:49:23] 2025-11-23 02:48:40,052 | INFO     | executing command: lscpu
[2025-11-22 21:49:23] 2025-11-23 02:48:40,063 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 21:49:23] 2025-11-23 02:48:40,302 | INFO     | time since job start (5073s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:41,929 | INFO     | monitor loop #389: job 0:6893935694 is in state 'finished'
[2025-11-22 21:49:23] 2025-11-23 02:48:41,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:49:23] 2025-11-23 02:48:42,307 | INFO     | time since job start (5075s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:42,307 | INFO     | 5077s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 21:49:23] 2025-11-23 02:48:44,312 | INFO     | time since job start (5077s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:44,432 | INFO     | monitor loop #390: job 0:6893935694 is in state 'finished'
[2025-11-22 21:49:23] 2025-11-23 02:48:44,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:49:23] 2025-11-23 02:48:46,317 | INFO     | time since job start (5079s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:46,936 | INFO     | monitor loop #391: job 0:6893935694 is in state 'finished'
[2025-11-22 21:49:23] 2025-11-23 02:48:46,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:49:23] 2025-11-23 02:48:48,322 | INFO     | time since job start (5081s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:49,439 | INFO     | monitor loop #392: job 0:6893935694 is in state 'finished'
[2025-11-22 21:49:23] 2025-11-23 02:48:49,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,327 | INFO     | time since job start (5083s) is within the limit (172800.0s)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,760 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 21:49:23] 2025-11-23 02:48:50,762 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 4188.714749999999
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | INFO     | using path: /var/lib/boinc/slots/31/PanDA_Pilot-6893935694/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | INFO     | extracted standard info from prmon json
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 21:49:23] 2025-11-23 02:48:50,764 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | fitting pss+swap vs Time
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | sum of square deviations: 136095575.0
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | sum of deviations: -15922989850.499998
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | mean x: 1763863661.5
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | mean y: 3060313.9342105263
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | intersect: 206372614795.99774
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | chi2: 0.1177239122498108
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | current memory leak: -117.00 B/s (using 76 data points, chi2=0.12)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,765 | INFO     | could have reported an average CPU frequency of 4333 MHz (6 samples)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | ..............................
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . Timing measurements:
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . get job = 0 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . initial setup = 2 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . payload setup = 6 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . stage-in = 0 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . payload execution = 5047 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . stage-out = 0 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | . log creation = 0 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,766 | INFO     | ..............................
[2025-11-22 21:49:23] 2025-11-23 02:48:50,795 | INFO     | 
[2025-11-22 21:49:23] 2025-11-23 02:48:50,795 | INFO     | job summary report
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | --------------------------------------------------
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | PanDA job id: 6893935694
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | task id: 47523642
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | errors: (none)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | pilot state: finished 
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | transexitcode: 0
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | exeerrorcode: 0
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | exeerrordiag: 
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | exitcode: 0
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | exitmsg: OK
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | cpuconsumptiontime: 56082 s
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | nevents: 400
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | neventsw: 0
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | pid: 94106
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | pgrp: 94106
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | corecount: 12
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | event service: False
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | sizes: {0: 2298286, 1: 2298485, 2: 2298747, 11: 2298775, 5057: 2324964, 5058: 2333964, 5059: 2334148, 5071: 2334370}
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | --------------------------------------------------
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | 
[2025-11-22 21:49:23] 2025-11-23 02:48:50,796 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 21:49:23] 2025-11-23 02:48:50,805 | INFO     | job 6893935694 has completed (purged errors)
[2025-11-22 21:49:23] 2025-11-23 02:48:50,805 | INFO     | overall cleanup function is called
[2025-11-22 21:49:23] 2025-11-23 02:48:51,810 | INFO     | --- collectZombieJob: --- 10, [94106]
[2025-11-22 21:49:23] 2025-11-23 02:48:51,810 | INFO     | zombie collector waiting for pid 94106
[2025-11-22 21:49:23] 2025-11-23 02:48:51,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 21:49:23] 2025-11-23 02:48:51,810 | INFO     | collected zombie processes
[2025-11-22 21:49:23] 2025-11-23 02:48:51,810 | INFO     | will attempt to kill all subprocesses of pid=94106
[2025-11-22 21:49:23] 2025-11-23 02:48:51,852 | INFO     | process IDs to be killed: [94106] (in reverse order)
[2025-11-22 21:49:23] 2025-11-23 02:48:51,877 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 21:49:23] 2025-11-23 02:48:51,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 21:49:23] 2025-11-23 02:48:51,880 | INFO     | did not find any defunct processes belonging to 94106
[2025-11-22 21:49:23] 2025-11-23 02:48:51,882 | INFO     | did not find any defunct processes belonging to 94106
[2025-11-22 21:49:23] 2025-11-23 02:48:51,883 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 21:49:23] 2025-11-23 02:48:51,883 | INFO     | ready for new job
[2025-11-22 21:49:23] 2025-11-23 02:48:51,883 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 21:49:23] 2025-11-23 02:48:51,884 | INFO     | ***************************************
[2025-11-22 21:49:23] 2025-11-23 02:48:51,884 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 21:49:23] 2025-11-23 02:48:51,884 | INFO     | ***************************************
[2025-11-22 21:49:23] 2025-11-23 02:48:51,884 | INFO     | 
[2025-11-22 21:49:23] 2025-11-23 02:48:51,884 | INFO     | architecture information:
[2025-11-22 21:49:23] 2025-11-23 02:48:51,885 | INFO     | executing command: cat /etc/os-release
[2025-11-22 21:49:23] 2025-11-23 02:48:51,890 | INFO     | cat /etc/os-release:
[2025-11-22 21:49:23] NAME="CentOS Linux"
[2025-11-22 21:49:23] VERSION="7 (Core)"
[2025-11-22 21:49:23] ID="centos"
[2025-11-22 21:49:23] ID_LIKE="rhel fedora"
[2025-11-22 21:49:23] VERSION_ID="7"
[2025-11-22 21:49:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 21:49:23] ANSI_COLOR="0;31"
[2025-11-22 21:49:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 21:49:23] HOME_URL="https://www.centos.org/"
[2025-11-22 21:49:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 21:49:23] 
[2025-11-22 21:49:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 21:49:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 21:49:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 21:49:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 21:49:23] 
[2025-11-22 21:49:23] 2025-11-23 02:48:51,890 | INFO     | ***************************************
[2025-11-22 21:49:23] 2025-11-23 02:48:52,393 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | INFO     | sufficient remaining disk space (1810451398656 B)
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | INFO     | update_server=False
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 21:49:23] 2025-11-23 02:48:52,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:49:23] 2025-11-23 02:48:52,793 | INFO     | all data control threads have been joined
[2025-11-22 21:49:23] 2025-11-23 02:48:52,946 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:49:23] 2025-11-23 02:48:52,946 | INFO     | aborting loop
[2025-11-22 21:49:23] 2025-11-23 02:48:53,405 | INFO     | [job] retrieve thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:53,405 | INFO     | [job] queue monitor thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:53,527 | INFO     | all payload control threads have been joined
[2025-11-22 21:49:23] 2025-11-23 02:48:53,651 | INFO     | [data] copytool_in thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:53,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 21:49:23] 2025-11-23 02:48:53,759 | INFO     | all job control threads have been joined
[2025-11-22 21:49:23] 2025-11-23 02:48:53,798 | INFO     | [data] control thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:53,951 | INFO     | [job] job monitor thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,034 | INFO     | [payload] validate_post thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 21:49:23] 2025-11-23 02:48:54,381 | INFO     | [payload] failed_post thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,504 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,532 | INFO     | [payload] control thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,690 | INFO     | [job] validate thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,764 | INFO     | [job] control thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:54,839 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:55,756 | INFO     | [data] copytool_out thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:48:58,133 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:49:02,948 | INFO     | job.realtimelogging is not enabled
[2025-11-22 21:49:23] 2025-11-23 02:49:03,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 21:49:23] 2025-11-23 02:49:15,313 | INFO     | [monitor] cgroup control has ended
[2025-11-22 21:49:23] 2025-11-23 02:49:16,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131727758157632)>', '<ExcThread(monitor, started 131727032833792)>']
[2025-11-22 21:49:23] 2025-11-23 02:49:21,632 | INFO     | all workflow threads have been joined
[2025-11-22 21:49:23] 2025-11-23 02:49:21,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 21:49:23] 2025-11-23 02:49:21,632 | INFO     | traces error code: 0
[2025-11-22 21:49:23] 2025-11-23 02:49:21,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | INFO     | PID=87432 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | INFO     | .. there are 2 such processes running
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 21:49:23] 2025-11-23 02:49:23,496 | INFO     | [monitor] control thread has ended
[2025-11-22 21:49:23] 2025-11-23 02:49:23,550 [wrapper] ==== pilot stdout END ====
[2025-11-22 21:49:23] 2025-11-23 02:49:23,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 21:49:23] 2025-11-23 02:49:23,553 [wrapper] pilotpid: 87432
[2025-11-22 21:49:23] 2025-11-23 02:49:23,554 [wrapper] Pilot exit status: 0
[2025-11-22 21:49:23] 2025-11-23 02:49:23,559 [wrapper] pandaids: 6893935694
[2025-11-22 21:49:23] 2025-11-23 02:49:23,580 [wrapper] cleanup supervisor_pilot  129275 87433
[2025-11-22 21:49:23] 2025-11-23 02:49:23,581 [wrapper] Test setup, not cleaning
[2025-11-22 21:49:23] 2025-11-23 02:49:23,582 [wrapper] apfmon messages muted
[2025-11-22 21:49:23] 2025-11-23 02:49:23,583 [wrapper] ==== wrapper stdout END ====
[2025-11-22 21:49:23] 2025-11-23 02:49:23,584 [wrapper] ==== wrapper stderr END ====
[2025-11-22 21:49:23]  *** Error codes and diagnostics ***
[2025-11-22 21:49:23]     "exeErrorCode": 0,
[2025-11-22 21:49:23]     "exeErrorDiag": "",
[2025-11-22 21:49:23]     "pilotErrorCode": 0,
[2025-11-22 21:49:23]     "pilotErrorDiag": "",
[2025-11-22 21:49:23]  *** Listing of results directory ***
[2025-11-22 21:49:23] total 631724
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:16 pilot3.tar.gz
[2025-11-22 21:49:23] -rwx------ 1 boinc boinc     36292 Nov 21 11:27 runpilot2-wrapper.sh
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:27 queuedata.json
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc       100 Nov 22 20:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 21:49:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 20:24 run_atlas
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc       105 Nov 22 20:24 job.xml
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc 299583788 Nov 22 20:24 EVNT.47523640._000004.pool.root.1
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc    589950 Nov 22 20:24 input.tar.gz
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc     15847 Nov 22 20:24 start_atlas.sh
[2025-11-22 21:49:23] drwxrwx--x 2 boinc boinc      4096 Nov 22 20:24 shared
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc         0 Nov 22 20:24 boinc_setup_complete
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc      8827 Nov 22 20:24 init_data.xml
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc         0 Nov 22 20:24 boinc_lockfile
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc      2628 Nov 22 20:24 pandaJob.out
[2025-11-22 21:49:23] -rw------- 1 boinc boinc    989784 Nov 22 20:24 agis_schedconf.cvmfs.json
[2025-11-22 21:49:23] -rw------- 1 boinc boinc   1526164 Nov 22 20:24 agis_ddmendpoints.agis.ALL.json
[2025-11-22 21:49:23] drwx------ 5 boinc boinc      4096 Nov 22 20:24 pilot3
[2025-11-22 21:49:23] -rw------- 1 boinc boinc 341087755 Nov 22 21:48 HITS.47523642._000078.pool.root.1
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc       529 Nov 22 21:48 boinc_task_state.xml
[2025-11-22 21:49:23] -rw------- 1 boinc boinc      1017 Nov 22 21:48 memory_monitor_summary.json
[2025-11-22 21:49:23] -rw------- 1 boinc boinc    382159 Nov 22 21:48 log.47523642._000078.job.log.tgz.1
[2025-11-22 21:49:23] -rw------- 1 boinc boinc        95 Nov 22 21:48 pilot_heartbeat.json
[2025-11-22 21:49:23] -rw------- 1 boinc boinc      7760 Nov 22 21:48 heartbeat.json
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc      8192 Nov 22 21:49 boinc_mmap_file
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc        27 Nov 22 21:49 wrapper_checkpoint.txt
[2025-11-22 21:49:23] -rw------- 1 boinc boinc       820 Nov 22 21:49 pilotlog.txt
[2025-11-22 21:49:23] -rw------- 1 boinc boinc    762715 Nov 22 21:49 log.47523642._000078.job.log.1
[2025-11-22 21:49:23] -rw------- 1 boinc boinc       357 Nov 22 21:49 output.list
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc       620 Nov 22 21:49 runtime_log
[2025-11-22 21:49:23] -rw------- 1 boinc boinc   1167360 Nov 22 21:49 result.tar.gz
[2025-11-22 21:49:23] -rw------- 1 boinc boinc       660 Nov 22 21:49 7jEODm89ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKYJKDm7fTyCn.diag
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc      8871 Nov 22 21:49 runtime_log.err
[2025-11-22 21:49:23] -rw-r--r-- 1 boinc boinc     22660 Nov 22 21:49 stderr.txt
[2025-11-22 21:49:23] HITS file was successfully produced:
[2025-11-22 21:49:23] -rw------- 1 boinc boinc 341087755 Nov 22 21:48 shared/HITS.pool.root.1
[2025-11-22 21:49:23]  *** Contents of shared directory: ***
[2025-11-22 21:49:23] total 627404
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc 299583788 Nov 22 20:24 ATLAS.root_0
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc    589950 Nov 22 20:24 input.tar.gz
[2025-11-22 21:49:23] -rw-r--r-- 2 boinc boinc     15847 Nov 22 20:24 start_atlas.sh
[2025-11-22 21:49:23] -rw------- 1 boinc boinc 341087755 Nov 22 21:48 HITS.pool.root.1
[2025-11-22 21:49:23] -rw------- 1 boinc boinc   1167360 Nov 22 21:49 result.tar.gz
21:49:24 (83583): run_atlas exited; CPU time 56081.426362
21:49:24 (83583): called boinc_finish(0)

</stderr_txt>
]]>

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