Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 11:17:31 (11496): vboxwrapper version 26210
2025-11-24 11:17:31 (11496): BOINC client version: 7.24.1
2025-11-24 11:17:32 (11496): Detected: VirtualBox VboxManage Interface (Version: 7.0.10)
2025-11-24 11:17:32 (11496): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 11:17:32 (11496): Create VM. (boinc_417fad0e41369999, slot#0)
2025-11-24 11:17:33 (11496): Setting Memory Size for VM. (4800MB)
2025-11-24 11:17:33 (11496): Setting CPU Count for VM. (8)
2025-11-24 11:17:33 (11496): Setting Chipset Options for VM.
2025-11-24 11:17:34 (11496): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 11:17:34 (11496): Setting Boot Options for VM.
2025-11-24 11:17:34 (11496): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 11:17:35 (11496): Enabling VM Network Access.
2025-11-24 11:17:35 (11496): Disabling USB Support for VM.
2025-11-24 11:17:35 (11496): Disabling COM Port Support for VM.
2025-11-24 11:17:35 (11496): Disabling LPT Port Support for VM.
2025-11-24 11:17:36 (11496): Disabling Audio Support for VM.
2025-11-24 11:17:36 (11496): Disabling Clipboard Support for VM.
2025-11-24 11:17:36 (11496): Disabling Drag and Drop Support for VM.
2025-11-24 11:17:36 (11496): Adding storage controller(s) to VM.
2025-11-24 11:17:37 (11496): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 11:17:39 (11496): Adding VirtualBox Guest Additions to VM.
2025-11-24 11:17:39 (11496): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 11:17:39 (11496): forwarding host port 62166 to guest port 80
2025-11-24 11:17:39 (11496): Enabling remote desktop for VM.
2025-11-24 11:17:40 (11496): Required extension pack not installed, remote desktop not enabled.
2025-11-24 11:17:40 (11496): Enabling shared directory for VM.
2025-11-24 11:17:40 (11496): Starting VM using VBoxManage interface. (boinc_417fad0e41369999, slot#0)
2025-11-24 11:17:46 (11496): Successfully started VM. (PID = '7684')
2025-11-24 11:17:46 (11496): Reporting VM Process ID to BOINC.
2025-11-24 11:17:46 (11496): Guest Log: BIOS: VirtualBox 7.0.10
2025-11-24 11:17:46 (11496): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 11:17:46 (11496): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 11:17:46 (11496): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 11:17:46 (11496): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 11:17:46 (11496): Detected: Web Application Enabled (http://localhost:62166)
2025-11-24 11:17:46 (11496): Preference change detected
2025-11-24 11:17:46 (11496): Setting CPU throttle for VM. (100%)
2025-11-24 11:17:46 (11496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 11:17:48 (11496): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 11:17:48 (11496): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 11:17:50 (11496): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 11:17:50 (11496): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 11:17:50 (11496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 11:17:56 (11496): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 11:17:56 (11496): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 11:18:01 (11496): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000156 main     Log opened 2025-11-24T11:17:58.929936000Z
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000236 main     OS Product: Linux
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000265 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000288 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000311 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000312 main     Process ID: 1367
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.000313 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 11:18:01 (11496): Guest Log: 00:00:00.001752 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 11:18:01 (11496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 11:18:01 (11496): Guest Log: [INFO] Mounting shared directory
2025-11-24 11:18:01 (11496): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 11:18:11 (11496): Guest Log: 00:00:10.013378 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 113 290 000ns (GuestNow=1 763 950 690 819 418 000 ns GuestLast=1 763 983 078 932 708 000 ns fSetTimeLastLoop=true )
2025-11-24 11:18:29 (11496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 11:18:29 (11496): Guest Log: [INFO] Detected branch: prod
2025-11-24 11:18:30 (11496): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 11:18:30 (11496): Guest Log: Copying input files
2025-11-24 11:18:31 (11496): Guest Log: Copied input files into RunAtlas.
2025-11-24 11:18:31 (11496): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 11:18:31 (11496): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 11:18:31 (11496): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 11:18:31 (11496): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 11:18:45 (11496): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 11:18:46 (11496): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 11:18:46 (11496): Guest Log: 2.6.3.0 1671 0 30132 153229 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 11:18:46 (11496): Guest Log: copied the webapp to /var/www
2025-11-24 11:18:47 (11496): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 11:18:47 (11496): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 11:18:49 (11496): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 11:18:49 (11496): Guest Log:  *** Starting ATLAS job. (PandaID=6895327991 taskID=47556137) ***
2025-11-24 12:58:02 (11496): Status Report: Elapsed Time: '6000.000000'
2025-11-24 12:58:02 (11496): Status Report: CPU Time: '22181.078125'
2025-11-24 14:38:24 (11496): Status Report: Elapsed Time: '12000.000000'
2025-11-24 14:38:24 (11496): Status Report: CPU Time: '54210.375000'
2025-11-24 16:18:46 (11496): Status Report: Elapsed Time: '18000.000000'
2025-11-24 16:18:46 (11496): Status Report: CPU Time: '86270.109375'
2025-11-24 17:59:08 (11496): Status Report: Elapsed Time: '24000.000000'
2025-11-24 17:59:08 (11496): Status Report: CPU Time: '118288.656250'
2025-11-24 19:39:29 (11496): Status Report: Elapsed Time: '30000.000000'
2025-11-24 19:39:29 (11496): Status Report: CPU Time: '150270.718750'
2025-11-24 21:19:50 (11496): Status Report: Elapsed Time: '36000.000000'
2025-11-24 21:19:50 (11496): Status Report: CPU Time: '182288.671875'
2025-11-24 23:00:12 (11496): Status Report: Elapsed Time: '42000.000000'
2025-11-24 23:00:12 (11496): Status Report: CPU Time: '214293.953125'
2025-11-25 00:40:34 (11496): Status Report: Elapsed Time: '48000.000000'
2025-11-25 00:40:34 (11496): Status Report: CPU Time: '246256.421875'
2025-11-25 02:20:55 (11496): Status Report: Elapsed Time: '54000.000000'
2025-11-25 02:20:55 (11496): Status Report: CPU Time: '278096.750000'
2025-11-25 04:01:34 (11496): Status Report: Elapsed Time: '60000.000000'
2025-11-25 04:01:34 (11496): Status Report: CPU Time: '316992.609375'
2025-11-25 05:43:12 (11496): Status Report: Elapsed Time: '66000.104017'
2025-11-25 05:43:12 (11496): Status Report: CPU Time: '365277.734375'
2025-11-25 06:00:30 (11496): Guest Log:  *** Job finished ***
2025-11-25 06:00:30 (11496): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:13,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:13,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:21,425 | INFO     | [monitor] cgroup control has ended
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:22,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906783786816)>', '<ExcThread(monitor, started 139906160498432)>']
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:23,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:23,367 | INFO     | [monitor] control thread has ended
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:27,973 | INFO     | all workflow threads have been joined
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:27,973 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:27,973 | INFO     | traces error code: 0
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:27,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,042 [wrapper] ==== pilot stdout END ====
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,046 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,049 [wrapper] pilotpid: 6129
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,052 [wrapper] Pilot exit status: 0
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,062 [wrapper] pandaids: 6895327991
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,088 [wrapper] cleanup supervisor_pilot 22693 6130
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,095 [wrapper] Test setup, not cleaning
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,101 [wrapper] apfmon messages muted
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,104 [wrapper] ==== wrapper stdout END ====
2025-11-25 06:00:30 (11496): Guest Log: 2025-11-24 21:00:28,108 [wrapper] ==== wrapper stderr END ====
2025-11-25 06:00:30 (11496): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 06:00:30 (11496): Guest Log:     "exeErrorCode": 0,
2025-11-25 06:00:30 (11496): Guest Log:     "exeErrorDiag": "",
2025-11-25 06:00:30 (11496): Guest Log:     "pilotErrorCode": 0,
2025-11-25 06:00:30 (11496): Guest Log:     "pilotErrorDiag": "",
2025-11-25 06:00:30 (11496): Guest Log:  *** Listing of results directory ***
2025-11-25 06:00:30 (11496): Guest Log: total 924840
2025-11-25 06:00:30 (11496): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 15:53 pilot3.tar.gz
2025-11-25 06:00:30 (11496): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 16:11 runpilot2-wrapper.sh
2025-11-25 06:00:30 (11496): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 16:11 queuedata.json
2025-11-25 06:00:30 (11496): Guest Log: -rwxr-xr-x. 1 atlas atlas      6093 Nov 24 02:18 init_data.xml
2025-11-25 06:00:30 (11496): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 24 02:18 input.tar.gz
2025-11-25 06:00:30 (11496): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 02:18 start_atlas.sh
2025-11-25 06:00:30 (11496): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 02:18 EVNT.47483658._000057.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 06:00:30 (11496): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 24 02:18 pandaJob.out
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 24 02:23 agis_schedconf.cvmfs.json
2025-11-25 06:00:30 (11496): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 02:24 pilot3
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas 921847925 Nov 24 20:59 HITS.47556137._000570.pool.root.1
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas      1045 Nov 24 20:59 memory_monitor_summary.json
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 20:59 agis_ddmendpoints.agis.ALL.json
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas   2228886 Nov 24 20:59 log.47556137._000570.job.log.tgz.1
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas      8668 Nov 24 20:59 heartbeat.json
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 21:00 pilot_heartbeat.json
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 24 21:00 pilotlog.txt
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas   8442940 Nov 24 21:00 log.47556137._000570.job.log.1
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 21:00 output.list
2025-11-25 06:00:30 (11496): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 21:00 runtime_log
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas  10690560 Nov 24 21:00 result.tar.gz
2025-11-25 06:00:30 (11496): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Nov 24 21:00 runtime_log.err
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas       669 Nov 24 21:00 59PKDmbuig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAjHKDmNh20An.diag
2025-11-25 06:00:30 (11496): Guest Log: Looking for outputfile HITS.47556137._000570.pool.root.1
2025-11-25 06:00:30 (11496): Guest Log: HITS file was successfully produced
2025-11-25 06:00:30 (11496): Guest Log: -rw-------. 1 atlas atlas 921847925 Nov 24 20:59 /home/atlas/RunAtlas/HITS.47556137._000570.pool.root.1
2025-11-25 06:00:33 (11496): Guest Log: Successfully finished the ATLAS job!
2025-11-25 06:00:33 (11496): Guest Log: Copying the results back to the shared directory!
2025-11-25 06:00:33 (11496): Guest Log:  *** Contents of shared directory: ***
2025-11-25 06:00:33 (11496): Guest Log: total 1312980
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root 411329955 Nov 24 02:17 ATLAS.root_0
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root 921847925 Nov 24 21:00 HITS.pool.root.1
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root      6093 Nov 24 02:17 init_data.xml
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 23 02:38 input.tar.gz
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root  10690560 Nov 24 21:00 result.tar.gz
2025-11-25 06:00:33 (11496): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 02:38 start_atlas.sh
2025-11-25 06:00:33 (11496): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 06:00:33 (11496): VM Completion File Detected.
2025-11-25 06:00:33 (11496): Powering off VM.
2025-11-25 06:00:33 (11496): Successfully stopped VM.
2025-11-25 06:00:33 (11496): Deregistering VM. (boinc_417fad0e41369999, slot#0)
2025-11-25 06:00:33 (11496): Removing network bandwidth throttle group from VM.
2025-11-25 06:00:34 (11496): Removing VM from VirtualBox.
2025-11-25 06:00:39 (11496): called boinc_finish(0)

</stderr_txt>
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