Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:28 (17278): wrapper (7.7.26015): starting
22:00:28 (17278): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 22:00:28] Arguments: --nthreads 12
[2025-11-22 22:00:28] Threads: 12
[2025-11-22 22:00:28] Checking for CVMFS
[2025-11-22 22:00:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:00:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:00:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:00:28] 2.11.2.0 723 112741 89992 153193 0 81 11872757 20275201 1 130560 0 48374400 99.911 6200159 32987 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 22:00:28] CVMFS is ok
[2025-11-22 22:00:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:00:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:00:28] Further information can be found at the LHC@home message board.
[2025-11-22 22:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:00:28] Checking for apptainer binary...
[2025-11-22 22:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:00:28] Running /usr/bin/apptainer --version
[2025-11-22 22:00:28] apptainer version 1.3.2-1.el7
[2025-11-22 22:00:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:00:30] c-205-1.aglt2.org
[2025-11-22 22:00:30] apptainer works
[2025-11-22 22:00:30] Set ATHENA_PROC_NUMBER=12
[2025-11-22 22:00:30] Set ATHENA_CORE_NUMBER=12
[2025-11-22 22:00:30] Starting ATLAS job with PandaID=6895327501
[2025-11-22 22:00:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 05:17:35]  *** The last 200 lines of the pilot log: ***
[2025-11-23 05:17:35] 2025-11-23 10:16:25,308 | INFO     | monitor loop #1959: job 0:6895327501 is in state 'finished'
[2025-11-23 05:17:35] 2025-11-23 10:16:25,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:17:35] 2025-11-23 10:16:25,588 | INFO     | time since job start (26140s) is within the limit (172800.0s)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,455 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 05:17:35] 2025-11-23 10:16:26,459 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-11-23 05:17:35] 2025-11-23 10:16:26,462 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895327501/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,463 | INFO     | extracted standard info from prmon json
[2025-11-23 05:17:35] 2025-11-23 10:16:26,463 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 05:17:35] 2025-11-23 10:16:26,463 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 05:17:35] 2025-11-23 10:16:26,472 | INFO     | fitting pss+swap vs Time
[2025-11-23 05:17:35] 2025-11-23 10:16:26,473 | INFO     | sum of square deviations: 24311333721.07481
[2025-11-23 05:17:35] 2025-11-23 10:16:26,476 | INFO     | sum of deviations: 464144412149.45245
[2025-11-23 05:17:35] 2025-11-23 10:16:26,477 | INFO     | mean x: 1763879898.7897196
[2025-11-23 05:17:35] 2025-11-23 10:16:26,477 | INFO     | mean y: 3438333.1939252336
[2025-11-23 05:17:35] 2025-11-23 10:16:26,477 | INFO     | intersect: -33672007371.221973
[2025-11-23 05:17:35] 2025-11-23 10:16:26,477 | INFO     | chi2: 5.361571042253436
[2025-11-23 05:17:35] 2025-11-23 10:16:26,478 | INFO     | sum of square deviations: 23469253425.650177
[2025-11-23 05:17:35] 2025-11-23 10:16:26,482 | INFO     | sum of deviations: 611460118825.149
[2025-11-23 05:17:35] 2025-11-23 10:16:26,482 | INFO     | mean x: 1763879746.2931442
[2025-11-23 05:17:35] 2025-11-23 10:16:26,482 | INFO     | mean y: 3464969.361702128
[2025-11-23 05:17:35] 2025-11-23 10:16:26,482 | INFO     | intersect: -45952070969.5409
[2025-11-23 05:17:35] 2025-11-23 10:16:26,483 | INFO     | chi2: 2.7961998855138894
[2025-11-23 05:17:35] 2025-11-23 10:16:26,483 | INFO     | current chi2=2.7961998855138894 (change=47.84737787716297 %)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,483 | INFO     | sum of square deviations: 22646822358.306194
[2025-11-23 05:17:35] 2025-11-23 10:16:26,487 | INFO     | sum of deviations: 624229541416.2053
[2025-11-23 05:17:35] 2025-11-23 10:16:26,487 | INFO     | mean x: 1763879593.7942584
[2025-11-23 05:17:35] 2025-11-23 10:16:26,487 | INFO     | mean y: 3467303.5023923446
[2025-11-23 05:17:35] 2025-11-23 10:16:26,488 | INFO     | intersect: -48615528003.08434
[2025-11-23 05:17:35] 2025-11-23 10:16:26,488 | INFO     | chi2: 2.6337887487140565
[2025-11-23 05:17:35] 2025-11-23 10:16:26,488 | INFO     | current chi2=2.6337887487140565 (change=5.808280646931817 %)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,488 | INFO     | right removable region: 417
[2025-11-23 05:17:35] 2025-11-23 10:16:26,489 | INFO     | sum of square deviations: 23469177785.650177
[2025-11-23 05:17:35] 2025-11-23 10:16:26,493 | INFO     | sum of deviations: 316848169324.16376
[2025-11-23 05:17:35] 2025-11-23 10:16:26,493 | INFO     | mean x: 1763880051.2931442
[2025-11-23 05:17:35] 2025-11-23 10:16:26,493 | INFO     | mean y: 3464933.5390070924
[2025-11-23 05:17:35] 2025-11-23 10:16:26,493 | INFO     | intersect: -23809988194.81744
[2025-11-23 05:17:35] 2025-11-23 10:16:26,494 | INFO     | chi2: 2.920047658060147
[2025-11-23 05:17:35] 2025-11-23 10:16:26,494 | INFO     | current chi2=2.920047658060147 (change=45.53746215339024 %)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,494 | INFO     | sum of square deviations: 22646696637.71536
[2025-11-23 05:17:35] 2025-11-23 10:16:26,498 | INFO     | sum of deviations: 279946185639.8348
[2025-11-23 05:17:35] 2025-11-23 10:16:26,498 | INFO     | mean x: 1763880203.7966506
[2025-11-23 05:17:35] 2025-11-23 10:16:26,498 | INFO     | mean y: 3471774.73923445
[2025-11-23 05:17:35] 2025-11-23 10:16:26,498 | INFO     | intersect: -21800658994.431583
[2025-11-23 05:17:35] 2025-11-23 10:16:26,499 | INFO     | chi2: 2.8580812428578257
[2025-11-23 05:17:35] 2025-11-23 10:16:26,499 | INFO     | current chi2=2.8580812428578257 (change=2.1221028715499477 %)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,499 | INFO     | left removable region: 20
[2025-11-23 05:17:35] 2025-11-23 10:16:26,499 | INFO     | sum of square deviations: 19402092329.72811
[2025-11-23 05:17:35] 2025-11-23 10:16:26,503 | INFO     | sum of deviations: 383257027847.2894
[2025-11-23 05:17:35] 2025-11-23 10:16:26,503 | INFO     | mean x: 1763880173.302267
[2025-11-23 05:17:35] 2025-11-23 10:16:26,503 | INFO     | mean y: 3512938.4559193957
[2025-11-23 05:17:35] 2025-11-23 10:16:26,503 | INFO     | intersect: -34839093787.14881
[2025-11-23 05:17:35] 2025-11-23 10:16:26,504 | INFO     | chi2: 0.06156235853050517
[2025-11-23 05:17:35] 2025-11-23 10:16:26,504 | INFO     | current memory leak: 19.75 B/s (using 397 data points, chi2=0.06)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,504 | INFO     | could have reported an average CPU frequency of 2405 MHz (18 samples)
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | ..............................
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . Timing measurements:
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . get job = 0 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . initial setup = 2 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . payload setup = 7 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . stage-in = 0 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . payload execution = 26103 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,505 | INFO     | . stage-out = 3 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,506 | INFO     | . log creation = 0 s
[2025-11-23 05:17:35] 2025-11-23 10:16:26,506 | INFO     | ..............................
[2025-11-23 05:17:35] 2025-11-23 10:16:26,707 | INFO     | PID=21006 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 05:17:35] 2025-11-23 10:16:27,033 | INFO     | 
[2025-11-23 05:17:35] 2025-11-23 10:16:27,034 | INFO     | job summary report
[2025-11-23 05:17:35] 2025-11-23 10:16:27,034 | INFO     | --------------------------------------------------
[2025-11-23 05:17:35] 2025-11-23 10:16:27,034 | INFO     | PanDA job id: 6895327501
[2025-11-23 05:17:35] 2025-11-23 10:16:27,034 | INFO     | task id: 47556137
[2025-11-23 05:17:35] 2025-11-23 10:16:27,034 | INFO     | errors: (none)
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | pilot state: finished 
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | transexitcode: 0
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | exeerrorcode: 0
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | exeerrordiag: 
[2025-11-23 05:17:35] 2025-11-23 10:16:27,035 | INFO     | exitcode: 0
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | exitmsg: OK
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | cpuconsumptiontime: 300065 s
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | nevents: 1000
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | neventsw: 0
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | pid: 27505
[2025-11-23 05:17:35] 2025-11-23 10:16:27,036 | INFO     | pgrp: 27505
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | corecount: 12
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | event service: False
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | sizes: {0: 2298631, 1: 2298830, 5: 2299092, 11: 2299148, 26115: 2336522, 26119: 2345700, 26125: 2345890}
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | --------------------------------------------------
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | 
[2025-11-23 05:17:35] 2025-11-23 10:16:27,037 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 05:17:35] 2025-11-23 10:16:27,061 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 05:17:35] 2025-11-23 10:16:27,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,065 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 05:17:35] 2025-11-23 10:16:27,065 | INFO     | job 6895327501 has completed (purged errors)
[2025-11-23 05:17:35] 2025-11-23 10:16:27,065 | INFO     | overall cleanup function is called
[2025-11-23 05:17:35] 2025-11-23 10:16:28,081 | INFO     | --- collectZombieJob: --- 10, [27505]
[2025-11-23 05:17:35] 2025-11-23 10:16:28,081 | INFO     | zombie collector waiting for pid 27505
[2025-11-23 05:17:35] 2025-11-23 10:16:28,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 05:17:35] 2025-11-23 10:16:28,088 | INFO     | collected zombie processes
[2025-11-23 05:17:35] 2025-11-23 10:16:28,088 | INFO     | will attempt to kill all subprocesses of pid=27505
[2025-11-23 05:17:35] 2025-11-23 10:16:28,182 | INFO     | process IDs to be killed: [27505] (in reverse order)
[2025-11-23 05:17:35] 2025-11-23 10:16:28,233 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 05:17:35] 2025-11-23 10:16:28,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 05:17:35] 2025-11-23 10:16:28,237 | INFO     | did not find any defunct processes belonging to 27505
[2025-11-23 05:17:35] 2025-11-23 10:16:28,239 | INFO     | did not find any defunct processes belonging to 27505
[2025-11-23 05:17:35] 2025-11-23 10:16:28,241 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 05:17:35] 2025-11-23 10:16:28,241 | INFO     | ready for new job
[2025-11-23 05:17:35] 2025-11-23 10:16:28,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 05:17:35] 2025-11-23 10:16:28,244 | INFO     | ***************************************
[2025-11-23 05:17:35] 2025-11-23 10:16:28,244 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 05:17:35] 2025-11-23 10:16:28,244 | INFO     | ***************************************
[2025-11-23 05:17:35] 2025-11-23 10:16:28,244 | INFO     | 
[2025-11-23 05:17:35] 2025-11-23 10:16:28,245 | INFO     | architecture information:
[2025-11-23 05:17:35] 2025-11-23 10:16:28,246 | INFO     | executing command: cat /etc/os-release
[2025-11-23 05:17:35] 2025-11-23 10:16:28,261 | INFO     | cat /etc/os-release:
[2025-11-23 05:17:35] NAME="CentOS Linux"
[2025-11-23 05:17:35] VERSION="7 (Core)"
[2025-11-23 05:17:35] ID="centos"
[2025-11-23 05:17:35] ID_LIKE="rhel fedora"
[2025-11-23 05:17:35] VERSION_ID="7"
[2025-11-23 05:17:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 05:17:35] ANSI_COLOR="0;31"
[2025-11-23 05:17:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 05:17:35] HOME_URL="https://www.centos.org/"
[2025-11-23 05:17:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 05:17:35] 
[2025-11-23 05:17:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 05:17:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 05:17:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 05:17:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 05:17:35] 
[2025-11-23 05:17:35] 2025-11-23 10:16:28,261 | INFO     | ***************************************
[2025-11-23 05:17:35] 2025-11-23 10:16:28,764 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 05:17:35] 2025-11-23 10:16:28,780 | INFO     | sufficient remaining disk space (28365029376 B)
[2025-11-23 05:17:35] 2025-11-23 10:16:28,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 05:17:35] 2025-11-23 10:16:28,781 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 05:17:35] 2025-11-23 10:16:28,781 | INFO     | update_server=False
[2025-11-23 05:17:35] 2025-11-23 10:16:28,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 05:17:35] 2025-11-23 10:16:28,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 05:17:35] 2025-11-23 10:16:28,816 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:17:35] 2025-11-23 10:16:28,816 | INFO     | aborting loop
[2025-11-23 05:17:35] 2025-11-23 10:16:29,211 | INFO     | all data control threads have been joined
[2025-11-23 05:17:35] 2025-11-23 10:16:29,235 | INFO     | all payload control threads have been joined
[2025-11-23 05:17:35] 2025-11-23 10:16:29,458 | INFO     | all job control threads have been joined
[2025-11-23 05:17:35] 2025-11-23 10:16:29,783 | INFO     | [job] retrieve thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:29,820 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:29,822 | INFO     | [job] job monitor thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,216 | INFO     | [data] control thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,240 | INFO     | [payload] control thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,307 | INFO     | [payload] failed_post thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,463 | INFO     | [job] control thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,493 | INFO     | [job] validate thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,585 | INFO     | [data] copytool_in thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,783 | INFO     | [data] copytool_out thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:30,973 | INFO     | [payload] validate_post thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:31,012 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:31,177 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:31,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:17:35] 2025-11-23 10:16:31,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 05:17:35] 2025-11-23 10:16:32,609 | INFO     | [job] queue monitor thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:35,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 05:17:35] 2025-11-23 10:16:58,902 | INFO     | PID=21006 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 05:17:35] 2025-11-23 10:16:58,903 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 05:17:35] 2025-11-23 10:16:58,903 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 05:17:35] 2025-11-23 10:16:58,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 05:17:35] 2025-11-23 10:17:28,401 | INFO     | [monitor] cgroup control has ended
[2025-11-23 05:17:35] 2025-11-23 10:17:30,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139740425180992)>', '<ExcThread(monitor, started 139739713763072)>']
[2025-11-23 05:17:35] 2025-11-23 10:17:31,060 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 05:17:35] 2025-11-23 10:17:31,060 | INFO     | [monitor] control thread has ended
[2025-11-23 05:17:35] 2025-11-23 10:17:35,496 | INFO     | all workflow threads have been joined
[2025-11-23 05:17:35] 2025-11-23 10:17:35,496 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 05:17:35] 2025-11-23 10:17:35,496 | INFO     | traces error code: 0
[2025-11-23 05:17:35] 2025-11-23 10:17:35,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 05:17:35] 2025-11-23 10:17:35,594 [wrapper] ==== pilot stdout END ====
[2025-11-23 05:17:35] 2025-11-23 10:17:35,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 05:17:35] 2025-11-23 10:17:35,602 [wrapper] pilotpid: 21006
[2025-11-23 05:17:35] 2025-11-23 10:17:35,606 [wrapper] Pilot exit status: 0
[2025-11-23 05:17:35] 2025-11-23 10:17:35,620 [wrapper] pandaids: 6895327501
[2025-11-23 05:17:35] 2025-11-23 10:17:35,669 [wrapper] cleanup supervisor_pilot   399 21007
[2025-11-23 05:17:35] 2025-11-23 10:17:35,673 [wrapper] Test setup, not cleaning
[2025-11-23 05:17:35] 2025-11-23 10:17:35,677 [wrapper] apfmon messages muted
[2025-11-23 05:17:35] 2025-11-23 10:17:35,681 [wrapper] ==== wrapper stdout END ====
[2025-11-23 05:17:35] 2025-11-23 10:17:35,685 [wrapper] ==== wrapper stderr END ====
[2025-11-23 05:17:35]  *** Error codes and diagnostics ***
[2025-11-23 05:17:35]     "exeErrorCode": 0,
[2025-11-23 05:17:35]     "exeErrorDiag": "",
[2025-11-23 05:17:35]     "pilotErrorCode": 0,
[2025-11-23 05:17:35]     "pilotErrorDiag": "",
[2025-11-23 05:17:35]  *** Listing of results directory ***
[2025-11-23 05:17:35] total 1318936
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 10:53 pilot3.tar.gz
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 11:01 queuedata.json
[2025-11-23 05:17:35] -rwx------ 1 boincer umatlas     36292 Nov 21 11:02 runpilot2-wrapper.sh
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas       100 Nov 22 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 05:17:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 22:00 run_atlas
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas       105 Nov 22 22:00 job.xml
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas 411035025 Nov 22 22:00 EVNT.47483658._000054.pool.root.1
[2025-11-23 05:17:35] drwxrwx--x 2 boincer umatlas      4096 Nov 22 22:00 shared
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas    590101 Nov 22 22:00 input.tar.gz
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:00 start_atlas.sh
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas         0 Nov 22 22:00 boinc_lockfile
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas      2783 Nov 22 22:00 pandaJob.out
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas        57 Nov 22 22:00 setup.sh.local
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas    989784 Nov 22 22:00 agis_schedconf.cvmfs.json
[2025-11-23 05:17:35] drwx------ 5 boincer umatlas      4096 Nov 22 22:00 pilot3
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas       532 Nov 23 05:07 boinc_task_state.xml
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 05:13 init_data.xml
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas 923922609 Nov 23 05:15 HITS.47556137._000535.pool.root.1
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas      1061 Nov 23 05:16 memory_monitor_summary.json
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas   1526164 Nov 23 05:16 agis_ddmendpoints.agis.ALL.json
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas   2179807 Nov 23 05:16 log.47556137._000535.job.log.tgz.1
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas      8674 Nov 23 05:16 heartbeat.json
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas        95 Nov 23 05:16 pilot_heartbeat.json
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 05:17 boinc_mmap_file
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas        29 Nov 23 05:17 wrapper_checkpoint.txt
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas      4746 Nov 23 05:17 pilotlog.txt
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas   3672880 Nov 23 05:17 log.47556137._000535.job.log.1
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas       353 Nov 23 05:17 output.list
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas       620 Nov 23 05:17 runtime_log
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas   5867520 Nov 23 05:17 result.tar.gz
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas       669 Nov 23 05:17 yGdKDm2lig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8WJKDmEzMnDo.diag
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas      9340 Nov 23 05:17 runtime_log.err
[2025-11-23 05:17:35] -rw-r--r-- 1 boincer umatlas     21417 Nov 23 05:17 stderr.txt
[2025-11-23 05:17:35] HITS file was successfully produced:
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas 923922609 Nov 23 05:15 shared/HITS.pool.root.1
[2025-11-23 05:17:35]  *** Contents of shared directory: ***
[2025-11-23 05:17:35] total 1310012
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas 411035025 Nov 22 22:00 ATLAS.root_0
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas    590101 Nov 22 22:00 input.tar.gz
[2025-11-23 05:17:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 22:00 start_atlas.sh
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas 923922609 Nov 23 05:15 HITS.pool.root.1
[2025-11-23 05:17:35] -rw------- 1 boincer umatlas   5867520 Nov 23 05:17 result.tar.gz
05:17:37 (17278): run_atlas exited; CPU time 293253.449983
05:17:37 (17278): called boinc_finish(0)

</stderr_txt>
]]>

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