Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:07:02 (1536706): wrapper (7.7.26015): starting
20:07:02 (1536706): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 20:07:02] Arguments: --nthreads 8
[2025-11-22 20:07:02] Threads: 8
[2025-11-22 20:07:02] Checking for CVMFS
[2025-11-22 20:07:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:07:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:07:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:07:04] 2.13.3.0 5206 2136 212524 153191 3 353 22314983 40960001 41735 16776704 0 19291765 99.830 6687096 25465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 20:07:04] CVMFS is ok
[2025-11-22 20:07:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:07:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:07:04] Further information can be found at the LHC@home message board.
[2025-11-22 20:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:07:04] Checking for apptainer binary...
[2025-11-22 20:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:07:04] Running /usr/bin/apptainer --version
[2025-11-22 20:07:04] apptainer version 1.4.4-1.el9
[2025-11-22 20:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:07:05] lc-12-9.aglt2.org
[2025-11-22 20:07:05] apptainer works
[2025-11-22 20:07:05] Set ATHENA_PROC_NUMBER=8
[2025-11-22 20:07:05] Set ATHENA_CORE_NUMBER=8
[2025-11-22 20:07:06] Starting ATLAS job with PandaID=6895334491
[2025-11-22 20:07:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:09 (1536706): BOINC client no longer exists - exiting
20:20:09 (1536706): timer handler: client dead, exiting
20:28:38 (1595697): wrapper (7.7.26015): starting
20:28:38 (1595697): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 20:28:38] Arguments: --nthreads 8
[2025-11-22 20:28:38] Threads: 8
[2025-11-22 20:28:38] This job has been restarted, cleaning up previous attempt
[2025-11-22 20:28:38] Checking for CVMFS
[2025-11-22 20:28:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:28:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:28:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:28:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:28:40] 2.13.3.0 5206 2158 201740 153192 1 230 22341028 40960000 38029 16776704 0 19381899 99.831 6688416 25465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 20:28:40] CVMFS is ok
[2025-11-22 20:28:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:28:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:28:40] Further information can be found at the LHC@home message board.
[2025-11-22 20:28:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:28:40] Checking for apptainer binary...
[2025-11-22 20:28:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:28:40] Running /usr/bin/apptainer --version
[2025-11-22 20:28:40] apptainer version 1.4.4-1.el9
[2025-11-22 20:28:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:28:40] lc-12-9.aglt2.org
[2025-11-22 20:28:40] apptainer works
[2025-11-22 20:28:40] Set ATHENA_PROC_NUMBER=8
[2025-11-22 20:28:40] Set ATHENA_CORE_NUMBER=8
[2025-11-22 20:28:40] Starting ATLAS job with PandaID=6895334491
[2025-11-22 20:28:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:57:25]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:57:25] 2025-11-24 10:56:43,964 | INFO     | mean y: 2940650.080081095
[2025-11-24 05:57:25] 2025-11-24 10:56:43,964 | INFO     | intersect: -6936405737.997765
[2025-11-24 05:57:25] 2025-11-24 10:56:43,970 | INFO     | chi2: 9.552834369831487
[2025-11-24 05:57:25] 2025-11-24 10:56:43,984 | INFO     | sum of square deviations: 2363410121937.173
[2025-11-24 05:57:25] 2025-11-24 10:56:44,024 | INFO     | time since job start (120439s) is within the limit (172800.0s)
[2025-11-24 05:57:25] 2025-11-24 10:56:44,261 | INFO     | sum of deviations: 10044585108150.498
[2025-11-24 05:57:25] 2025-11-24 10:56:44,261 | INFO     | mean x: 1763921457.7804878
[2025-11-24 05:57:25] 2025-11-24 10:56:44,261 | INFO     | mean y: 2946356.3668699185
[2025-11-24 05:57:25] 2025-11-24 10:56:44,261 | INFO     | intersect: -7493788570.132698
[2025-11-24 05:57:25] 2025-11-24 10:56:44,264 | INFO     | chi2: 6.405623074149478
[2025-11-24 05:57:25] 2025-11-24 10:56:44,264 | INFO     | current chi2=6.405623074149478 (change=32.9453141742007 %)
[2025-11-24 05:57:25] 2025-11-24 10:56:44,270 | INFO     | sum of square deviations: 2345443419173.229
[2025-11-24 05:57:25] 2025-11-24 10:56:44,667 | INFO     | sum of deviations: 10541883087917.771
[2025-11-24 05:57:25] 2025-11-24 10:56:44,667 | INFO     | mean x: 1763921305.2888436
[2025-11-24 05:57:25] 2025-11-24 10:56:44,668 | INFO     | mean y: 2950574.9210392255
[2025-11-24 05:57:25] 2025-11-24 10:56:44,668 | INFO     | intersect: -7925210055.44585
[2025-11-24 05:57:25] 2025-11-24 10:56:44,670 | INFO     | chi2: 4.392106509386075
[2025-11-24 05:57:25] 2025-11-24 10:56:44,670 | INFO     | current chi2=4.392106509386075 (change=31.433578614532397 %)
[2025-11-24 05:57:25] 2025-11-24 10:56:44,677 | INFO     | sum of square deviations: 2327567780971.6885
[2025-11-24 05:57:25] 2025-11-24 10:56:44,886 | INFO     | sum of deviations: 10533121858878.236
[2025-11-24 05:57:25] 2025-11-24 10:56:44,887 | INFO     | mean x: 1763921152.7962205
[2025-11-24 05:57:25] 2025-11-24 10:56:44,887 | INFO     | mean y: 2950499.4943820224
[2025-11-24 05:57:25] 2025-11-24 10:56:44,887 | INFO     | intersect: -7979457834.109185
[2025-11-24 05:57:25] 2025-11-24 10:56:44,889 | INFO     | chi2: 4.340736222067805
[2025-11-24 05:57:25] 2025-11-24 10:56:44,907 | INFO     | current chi2=4.340736222067805 (change=1.1696047718444442 %)
[2025-11-24 05:57:25] 2025-11-24 10:56:44,907 | INFO     | right removable region: 1957
[2025-11-24 05:57:25] 2025-11-24 10:56:44,909 | INFO     | sum of square deviations: 2363406183777.172
[2025-11-24 05:57:25] 2025-11-24 10:56:45,331 | INFO     | sum of deviations: 8663113674454.981
[2025-11-24 05:57:25] 2025-11-24 10:56:45,331 | INFO     | mean x: 1763921762.7804878
[2025-11-24 05:57:25] 2025-11-24 10:56:45,331 | INFO     | mean y: 2946607.1087398375
[2025-11-24 05:57:25] 2025-11-24 10:56:45,331 | INFO     | intersect: -6462744668.772731
[2025-11-24 05:57:25] 2025-11-24 10:56:45,334 | INFO     | chi2: 6.407755238005078
[2025-11-24 05:57:25] 2025-11-24 10:56:45,334 | INFO     | current chi2=6.407755238005078 (change=32.92299447542802 %)
[2025-11-24 05:57:25] 2025-11-24 10:56:45,338 | INFO     | sum of square deviations: 2345436142997.1025
[2025-11-24 05:57:25] 2025-11-24 10:56:45,579 | INFO     | sum of deviations: 8404318399967.526
[2025-11-24 05:57:25] 2025-11-24 10:56:45,584 | INFO     | mean x: 1763921915.2862964
[2025-11-24 05:57:25] 2025-11-24 10:56:45,584 | INFO     | mean y: 2948802.417218543
[2025-11-24 05:57:25] 2025-11-24 10:56:45,584 | INFO     | intersect: -6317650226.897261
[2025-11-24 05:57:25] 2025-11-24 10:56:45,587 | INFO     | chi2: 6.0506757470893735
[2025-11-24 05:57:25] 2025-11-24 10:56:45,587 | INFO     | current chi2=6.0506757470893735 (change=5.57261439697053 %)
[2025-11-24 05:57:25] 2025-11-24 10:56:45,587 | INFO     | left removable region: 20
[2025-11-24 05:57:25] 2025-11-24 10:56:45,594 | INFO     | sum of square deviations: 2253470359250.0996
[2025-11-24 05:57:25] 2025-11-24 10:56:45,784 | INFO     | sum of deviations: 9196981784726.867
[2025-11-24 05:57:25] 2025-11-24 10:56:45,785 | INFO     | mean x: 1763921732.3180175
[2025-11-24 05:57:25] 2025-11-24 10:56:45,785 | INFO     | mean y: 2961832.3216313887
[2025-11-24 05:57:25] 2025-11-24 10:56:45,785 | INFO     | intersect: -7196048341.129777
[2025-11-24 05:57:25] 2025-11-24 10:56:45,791 | INFO     | chi2: 0.6341857039135884
[2025-11-24 05:57:25] 2025-11-24 10:56:45,792 | INFO     | current memory leak: 4.08 B/s (using 1937 data points, chi2=0.63)
[2025-11-24 05:57:25] 2025-11-24 10:56:45,793 | INFO     | could have reported an average CPU frequency of 2689 MHz (69 samples)
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | ..............................
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . Timing measurements:
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . get job = 0 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . initial setup = 2 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . payload setup = 28 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . stage-in = 0 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . payload execution = 120340 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . stage-out = 6 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | . log creation = 1 s
[2025-11-24 05:57:25] 2025-11-24 10:56:45,794 | INFO     | ..............................
[2025-11-24 05:57:25] 2025-11-24 10:56:46,050 | INFO     | time since job start (120441s) is within the limit (172800.0s)
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | 
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | job summary report
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | --------------------------------------------------
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | PanDA job id: 6895334491
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | task id: 47556137
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | errors: (none)
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:57:25] 2025-11-24 10:56:46,293 | INFO     | pilot state: finished 
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | transexitcode: 0
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | exeerrorcode: 0
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | exeerrordiag: 
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | exitcode: 0
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | exitmsg: OK
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | cpuconsumptiontime: 266026 s
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | nevents: 1000
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | neventsw: 0
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | pid: 1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | pgrp: 1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | corecount: 8
[2025-11-24 05:57:25] 2025-11-24 10:56:46,294 | INFO     | event service: False
[2025-11-24 05:57:25] 2025-11-24 10:56:46,303 | INFO     | sizes: {0: 2298579, 1: 2298663, 2: 2298862, 12: 2298862, 19: 2299152, 23: 2299180, 120370: 2376437, 120377: 2385487, 120400: 2385705}
[2025-11-24 05:57:25] 2025-11-24 10:56:46,303 | INFO     | --------------------------------------------------
[2025-11-24 05:57:25] 2025-11-24 10:56:46,303 | INFO     | 
[2025-11-24 05:57:25] 2025-11-24 10:56:46,303 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-24 05:57:25] 2025-11-24 10:56:46,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,430 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:57:25] 2025-11-24 10:56:46,457 | INFO     | job 6895334491 has completed (purged errors)
[2025-11-24 05:57:25] 2025-11-24 10:56:46,458 | INFO     | overall cleanup function is called
[2025-11-24 05:57:25] 2025-11-24 10:56:47,109 | INFO     | number of running child processes to parent process 1655977: 1
[2025-11-24 05:57:25] 2025-11-24 10:56:47,109 | INFO     | maximum number of monitored processes: 16
[2025-11-24 05:57:25] 2025-11-24 10:56:47,115 | INFO     | aborting job monitoring since job object (job id=6895334491) has expired
[2025-11-24 05:57:25] 2025-11-24 10:56:47,515 | INFO     | --- collectZombieJob: --- 10, [1655977]
[2025-11-24 05:57:25] 2025-11-24 10:56:47,516 | INFO     | zombie collector waiting for pid 1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:47,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:57:25] 2025-11-24 10:56:47,516 | INFO     | collected zombie processes
[2025-11-24 05:57:25] 2025-11-24 10:56:47,516 | INFO     | will attempt to kill all subprocesses of pid=1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:49,374 | INFO     | process IDs to be killed: [1655977] (in reverse order)
[2025-11-24 05:57:25] 2025-11-24 10:56:49,666 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:57:25] 2025-11-24 10:56:49,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:57:25] 2025-11-24 10:56:49,696 | INFO     | did not find any defunct processes belonging to 1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:49,728 | INFO     | did not find any defunct processes belonging to 1655977
[2025-11-24 05:57:25] 2025-11-24 10:56:49,730 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:57:25] 2025-11-24 10:56:49,730 | INFO     | ready for new job
[2025-11-24 05:57:25] 2025-11-24 10:56:49,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:57:25] 2025-11-24 10:56:49,735 | INFO     | ***************************************
[2025-11-24 05:57:25] 2025-11-24 10:56:49,736 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:57:25] 2025-11-24 10:56:49,736 | INFO     | ***************************************
[2025-11-24 05:57:25] 2025-11-24 10:56:49,736 | INFO     | 
[2025-11-24 05:57:25] 2025-11-24 10:56:49,741 | INFO     | architecture information:
[2025-11-24 05:57:25] 2025-11-24 10:56:49,742 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:57:25] 2025-11-24 10:56:49,796 | INFO     | cat /etc/os-release:
[2025-11-24 05:57:25] NAME="CentOS Linux"
[2025-11-24 05:57:25] VERSION="7 (Core)"
[2025-11-24 05:57:25] ID="centos"
[2025-11-24 05:57:25] ID_LIKE="rhel fedora"
[2025-11-24 05:57:25] VERSION_ID="7"
[2025-11-24 05:57:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:57:25] ANSI_COLOR="0;31"
[2025-11-24 05:57:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:57:25] HOME_URL="https://www.centos.org/"
[2025-11-24 05:57:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:57:25] 
[2025-11-24 05:57:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:57:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:57:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:57:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:57:25] 
[2025-11-24 05:57:25] 2025-11-24 10:56:49,796 | INFO     | ***************************************
[2025-11-24 05:57:25] 2025-11-24 10:56:50,311 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-24 05:57:25] 2025-11-24 10:56:50,332 | INFO     | sufficient remaining disk space (415895650304 B)
[2025-11-24 05:57:25] 2025-11-24 10:56:50,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:57:25] 2025-11-24 10:56:50,333 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:57:25] 2025-11-24 10:56:50,333 | INFO     | update_server=False
[2025-11-24 05:57:25] 2025-11-24 10:56:50,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:57:25] 2025-11-24 10:56:50,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:57:25] 2025-11-24 10:56:50,657 | INFO     | aborting loop
[2025-11-24 05:57:25] 2025-11-24 10:56:50,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:57:25] 2025-11-24 10:56:50,873 | INFO     | all data control threads have been joined
[2025-11-24 05:57:25] 2025-11-24 10:56:51,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:57:25] 2025-11-24 10:56:51,339 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:57:25] 2025-11-24 10:56:51,366 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,451 | INFO     | [job] validate thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,499 | INFO     | all payload control threads have been joined
[2025-11-24 05:57:25] 2025-11-24 10:56:51,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,602 | INFO     | all job control threads have been joined
[2025-11-24 05:57:25] 2025-11-24 10:56:51,663 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,735 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,762 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:51,879 | INFO     | [data] control thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,221 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,352 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,538 | INFO     | [payload] control thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,609 | INFO     | [job] control thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,654 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:52,787 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:56:55,326 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:57:00,438 | INFO     | job.realtimelogging is not enabled
[2025-11-24 05:57:25] 2025-11-24 10:57:01,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:57:25] 2025-11-24 10:57:17,973 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:57:25] 2025-11-24 10:57:19,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420929681216)>', '<ExcThread(monitor, started 140420449294080)>']
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | INFO     | PID=1617882 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | INFO     | .. there are 82 such processes running
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:57:25] 2025-11-24 10:57:21,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:57:25] 2025-11-24 10:57:21,121 | INFO     | [monitor] control thread has ended
[2025-11-24 05:57:25] 2025-11-24 10:57:24,574 | INFO     | all workflow threads have been joined
[2025-11-24 05:57:25] 2025-11-24 10:57:24,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:57:25] 2025-11-24 10:57:24,575 | INFO     | traces error code: 0
[2025-11-24 05:57:25] 2025-11-24 10:57:24,575 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:57:25] 2025-11-24 10:57:24,863 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:57:25] 2025-11-24 10:57:24,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:57:25] 2025-11-24 10:57:24,921 [wrapper] pilotpid: 1617882
[2025-11-24 05:57:25] 2025-11-24 10:57:24,932 [wrapper] Pilot exit status: 0
[2025-11-24 05:57:25] 2025-11-24 10:57:25,003 [wrapper] pandaids: 6895334491 6895334491
[2025-11-24 05:57:25] 2025-11-24 10:57:25,208 [wrapper] cleanup supervisor_pilot 3567267 1617883
[2025-11-24 05:57:25] 2025-11-24 10:57:25,212 [wrapper] Test setup, not cleaning
[2025-11-24 05:57:25] 2025-11-24 10:57:25,214 [wrapper] apfmon messages muted
[2025-11-24 05:57:25] 2025-11-24 10:57:25,217 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:57:25] 2025-11-24 10:57:25,219 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:57:25]  *** Error codes and diagnostics ***
[2025-11-24 05:57:25]     "exeErrorCode": 0,
[2025-11-24 05:57:25]     "exeErrorDiag": "",
[2025-11-24 05:57:25]     "pilotErrorCode": 0,
[2025-11-24 05:57:25]     "pilotErrorDiag": "",
[2025-11-24 05:57:25]  *** Listing of results directory ***
[2025-11-24 05:57:25] total 1734600
[2025-11-24 05:57:25] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 22:44 pilot3.tar.gz
[2025-11-24 05:57:25] -rwx------. 1 boincer umatlas     36292 Nov 21 22:51 runpilot2-wrapper.sh
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 22:51 queuedata.json
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas       100 Nov 22 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:57:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 20:07 run_atlas
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas       105 Nov 22 20:07 job.xml
[2025-11-24 05:57:25] -rw-r--r--. 3 boincer umatlas 409457539 Nov 22 20:07 EVNT.47483658._000239.pool.root.1
[2025-11-24 05:57:25] -rw-r--r--. 3 boincer umatlas 409457539 Nov 22 20:07 ATLAS.root_0
[2025-11-24 05:57:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 20:07 start_atlas.sh
[2025-11-24 05:57:25] drwxrwx--x. 2 boincer umatlas        68 Nov 22 20:07 shared
[2025-11-24 05:57:25] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 20:07 input.tar.gz
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas         0 Nov 22 20:07 boinc_lockfile
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 20:28 pandaJob.out
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas    989784 Nov 22 20:29 agis_schedconf.cvmfs.json
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas       533 Nov 24 05:44 boinc_task_state.xml
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas      6800 Nov 24 05:49 init_data.xml
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas 921839358 Nov 24 05:55 HITS.47556137._002353.pool.root.1
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas      1059 Nov 24 05:56 memory_monitor_summary.json
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas   1526164 Nov 24 05:56 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas   2688464 Nov 24 05:56 log.47556137._002353.job.log.tgz.1
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas        96 Nov 24 05:56 pilot_heartbeat.json
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas      8619 Nov 24 05:56 heartbeat.json
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 05:57 boinc_mmap_file
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas        29 Nov 24 05:57 wrapper_checkpoint.txt
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas      4897 Nov 24 05:57 pilotlog.txt
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas  13088544 Nov 24 05:57 log.47556137._002353.job.log.1
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas       353 Nov 24 05:57 output.list
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas       620 Nov 24 05:57 runtime_log
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas  15800320 Nov 24 05:57 result.tar.gz
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas       787 Nov 24 05:57 yhnKDmoptg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAwHKDmxCuYWm.diag
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas      8899 Nov 24 05:57 runtime_log.err
[2025-11-24 05:57:25] -rw-r--r--. 1 boincer umatlas     23533 Nov 24 05:57 stderr.txt
[2025-11-24 05:57:25] HITS file was successfully produced:
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas 921839358 Nov 24 05:55 shared/HITS.pool.root.1
[2025-11-24 05:57:25]  *** Contents of shared directory: ***
[2025-11-24 05:57:25] total 1316128
[2025-11-24 05:57:25] -rw-r--r--. 3 boincer umatlas 409457539 Nov 22 20:07 ATLAS.root_0
[2025-11-24 05:57:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 20:07 start_atlas.sh
[2025-11-24 05:57:25] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 20:07 input.tar.gz
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas 921839358 Nov 24 05:55 HITS.pool.root.1
[2025-11-24 05:57:25] -rw-------. 1 boincer umatlas  15800320 Nov 24 05:57 result.tar.gz
05:57:27 (1595697): run_atlas exited; CPU time 272474.019193
05:57:27 (1595697): called boinc_finish(0)

</stderr_txt>
]]>

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