Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:02:48 (30049): wrapper (7.7.26015): starting
20:02:48 (30049): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 20:02:48] Arguments: --nthreads 12
[2025-11-22 20:02:48] Threads: 12
[2025-11-22 20:02:48] Checking for CVMFS
[2025-11-22 20:02:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:02:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:02:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:02:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:02:48] 2.11.2.0 3009 67943 94000 153191 3 81 10973048 20275201 1 130560 0 27757243 99.908 3630226 34208 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 20:02:48] CVMFS is ok
[2025-11-22 20:02:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:02:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:02:48] Further information can be found at the LHC@home message board.
[2025-11-22 20:02:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:02:48] Checking for apptainer binary...
[2025-11-22 20:02:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:02:48] Running /usr/bin/apptainer --version
[2025-11-22 20:02:49] apptainer version 1.3.2-1.el7
[2025-11-22 20:02:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:02:50] c-115-42.aglt2.org
[2025-11-22 20:02:50] apptainer works
[2025-11-22 20:02:50] Set ATHENA_PROC_NUMBER=12
[2025-11-22 20:02:50] Set ATHENA_CORE_NUMBER=12
[2025-11-22 20:02:50] Starting ATLAS job with PandaID=6895341397
[2025-11-22 20:02:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:28:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:28:54] 2025-11-23 07:28:21,386 | INFO     | monitor loop #1728: job 0:6895341397 is in state 'finished'
[2025-11-23 02:28:54] 2025-11-23 07:28:21,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,830 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 02:28:54] 2025-11-23 07:28:21,834 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,836 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895341397/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,837 | INFO     | extracted standard info from prmon json
[2025-11-23 02:28:54] 2025-11-23 07:28:21,837 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:28:54] 2025-11-23 07:28:21,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:28:54] 2025-11-23 07:28:21,843 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:28:54] 2025-11-23 07:28:21,844 | INFO     | sum of square deviations: 16880643027.799574
[2025-11-23 02:28:54] 2025-11-23 07:28:21,847 | INFO     | sum of deviations: 267014595874.98926
[2025-11-23 02:28:54] 2025-11-23 07:28:21,847 | INFO     | mean x: 1763871342.1794195
[2025-11-23 02:28:54] 2025-11-23 07:28:21,847 | INFO     | mean y: 4037679.588390501
[2025-11-23 02:28:54] 2025-11-23 07:28:21,848 | INFO     | intersect: -27896522318.741585
[2025-11-23 02:28:54] 2025-11-23 07:28:21,848 | INFO     | chi2: 6.16342647223187
[2025-11-23 02:28:54] 2025-11-23 07:28:21,848 | INFO     | sum of square deviations: 16221330475.1363
[2025-11-23 02:28:54] 2025-11-23 07:28:21,852 | INFO     | sum of deviations: 440625493712.13635
[2025-11-23 02:28:54] 2025-11-23 07:28:21,852 | INFO     | mean x: 1763871189.6818182
[2025-11-23 02:28:54] 2025-11-23 07:28:21,852 | INFO     | mean y: 4077779.0935828877
[2025-11-23 02:28:54] 2025-11-23 07:28:21,852 | INFO     | intersect: -47908552753.244675
[2025-11-23 02:28:54] 2025-11-23 07:28:21,852 | INFO     | chi2: 3.059826211749435
[2025-11-23 02:28:54] 2025-11-23 07:28:21,853 | INFO     | current chi2=3.059826211749435 (change=50.35511130805418 %)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,853 | INFO     | sum of square deviations: 15579413597.468758
[2025-11-23 02:28:54] 2025-11-23 07:28:21,856 | INFO     | sum of deviations: 494761992754.7041
[2025-11-23 02:28:54] 2025-11-23 07:28:21,856 | INFO     | mean x: 1763871037.1842818
[2025-11-23 02:28:54] 2025-11-23 07:28:21,856 | INFO     | mean y: 4090541.224932249
[2025-11-23 02:28:54] 2025-11-23 07:28:21,856 | INFO     | intersect: -56011904146.88015
[2025-11-23 02:28:54] 2025-11-23 07:28:21,856 | INFO     | chi2: 2.405041189046796
[2025-11-23 02:28:54] 2025-11-23 07:28:21,857 | INFO     | current chi2=2.405041189046796 (change=21.399418705164628 %)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,857 | INFO     | right removable region: 368
[2025-11-23 02:28:54] 2025-11-23 07:28:21,857 | INFO     | sum of square deviations: 16221288995.136307
[2025-11-23 02:28:54] 2025-11-23 07:28:21,860 | INFO     | sum of deviations: 128880342558.2271
[2025-11-23 02:28:54] 2025-11-23 07:28:21,860 | INFO     | mean x: 1763871494.6818182
[2025-11-23 02:28:54] 2025-11-23 07:28:21,860 | INFO     | mean y: 4069495.1363636362
[2025-11-23 02:28:54] 2025-11-23 07:28:21,860 | INFO     | intersect: -14010128916.065454
[2025-11-23 02:28:54] 2025-11-23 07:28:21,861 | INFO     | chi2: 3.897540443992521
[2025-11-23 02:28:54] 2025-11-23 07:28:21,861 | INFO     | current chi2=3.897540443992521 (change=36.76341461113978 %)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,861 | INFO     | sum of square deviations: 15579375898.195173
[2025-11-23 02:28:54] 2025-11-23 07:28:21,864 | INFO     | sum of deviations: 102143793473.65848
[2025-11-23 02:28:54] 2025-11-23 07:28:21,864 | INFO     | mean x: 1763871647.1788619
[2025-11-23 02:28:54] 2025-11-23 07:28:21,864 | INFO     | mean y: 4075836.18699187
[2025-11-23 02:28:54] 2025-11-23 07:28:21,864 | INFO     | intersect: -11560478637.676847
[2025-11-23 02:28:54] 2025-11-23 07:28:21,865 | INFO     | chi2: 3.8643352860175577
[2025-11-23 02:28:54] 2025-11-23 07:28:21,865 | INFO     | current chi2=3.8643352860175577 (change=0.851951594912743 %)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,865 | INFO     | left removable region: 20
[2025-11-23 02:28:54] 2025-11-23 07:28:21,865 | INFO     | sum of square deviations: 13067975518.859179
[2025-11-23 02:28:54] 2025-11-23 07:28:21,868 | INFO     | sum of deviations: 282304608684.9568
[2025-11-23 02:28:54] 2025-11-23 07:28:21,868 | INFO     | mean x: 1763871616.6867816
[2025-11-23 02:28:54] 2025-11-23 07:28:21,868 | INFO     | mean y: 4142263.577586207
[2025-11-23 02:28:54] 2025-11-23 07:28:21,868 | INFO     | intersect: -38100389368.0163
[2025-11-23 02:28:54] 2025-11-23 07:28:21,868 | INFO     | chi2: 0.02870645898780639
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | current memory leak: 21.60 B/s (using 348 data points, chi2=0.03)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | could have reported an average CPU frequency of 2599 MHz (16 samples)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | ..............................
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | . Timing measurements:
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | . get job = 0 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,869 | INFO     | . initial setup = 2 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | . payload setup = 7 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | . stage-in = 0 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | . payload execution = 23080 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | . stage-out = 3 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | . log creation = 0 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,870 | INFO     | ..............................
[2025-11-23 02:28:54] 2025-11-23 07:28:21,944 | INFO     | 
[2025-11-23 02:28:54] 2025-11-23 07:28:21,944 | INFO     | job summary report
[2025-11-23 02:28:54] 2025-11-23 07:28:21,944 | INFO     | --------------------------------------------------
[2025-11-23 02:28:54] 2025-11-23 07:28:21,944 | INFO     | PanDA job id: 6895341397
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | task id: 47556137
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | errors: (none)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | pilot state: finished 
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | transexitcode: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,945 | INFO     | exeerrorcode: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | exeerrordiag: 
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | exitcode: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | exitmsg: OK
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | cpuconsumptiontime: 266236 s
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | nevents: 1000
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | neventsw: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,946 | INFO     | pid: 7859
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | pgrp: 7859
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | corecount: 12
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | event service: False
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | sizes: {0: 2298705, 5: 2298967, 11: 2299023, 23091: 2334844, 23092: 2334843, 23095: 2344077, 23101: 2344267}
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | --------------------------------------------------
[2025-11-23 02:28:54] 2025-11-23 07:28:21,947 | INFO     | 
[2025-11-23 02:28:54] 2025-11-23 07:28:21,948 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 02:28:54] 2025-11-23 07:28:21,973 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,974 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,974 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,974 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,974 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,974 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,976 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:28:54] 2025-11-23 07:28:21,977 | INFO     | job 6895341397 has completed (purged errors)
[2025-11-23 02:28:54] 2025-11-23 07:28:21,977 | INFO     | overall cleanup function is called
[2025-11-23 02:28:54] 2025-11-23 07:28:22,991 | INFO     | --- collectZombieJob: --- 10, [7859]
[2025-11-23 02:28:54] 2025-11-23 07:28:22,991 | INFO     | zombie collector waiting for pid 7859
[2025-11-23 02:28:54] 2025-11-23 07:28:22,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:28:54] 2025-11-23 07:28:22,992 | INFO     | collected zombie processes
[2025-11-23 02:28:54] 2025-11-23 07:28:22,992 | INFO     | will attempt to kill all subprocesses of pid=7859
[2025-11-23 02:28:54] 2025-11-23 07:28:23,079 | INFO     | process IDs to be killed: [7859] (in reverse order)
[2025-11-23 02:28:54] 2025-11-23 07:28:23,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:28:54] 2025-11-23 07:28:23,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:28:54] 2025-11-23 07:28:23,134 | INFO     | did not find any defunct processes belonging to 7859
[2025-11-23 02:28:54] 2025-11-23 07:28:23,137 | INFO     | did not find any defunct processes belonging to 7859
[2025-11-23 02:28:54] 2025-11-23 07:28:23,139 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:28:54] 2025-11-23 07:28:23,139 | INFO     | ready for new job
[2025-11-23 02:28:54] 2025-11-23 07:28:23,139 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:28:54] 2025-11-23 07:28:23,141 | INFO     | ***************************************
[2025-11-23 02:28:54] 2025-11-23 07:28:23,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:28:54] 2025-11-23 07:28:23,141 | INFO     | ***************************************
[2025-11-23 02:28:54] 2025-11-23 07:28:23,141 | INFO     | 
[2025-11-23 02:28:54] 2025-11-23 07:28:23,141 | INFO     | architecture information:
[2025-11-23 02:28:54] 2025-11-23 07:28:23,142 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:28:54] 2025-11-23 07:28:23,159 | INFO     | cat /etc/os-release:
[2025-11-23 02:28:54] NAME="CentOS Linux"
[2025-11-23 02:28:54] VERSION="7 (Core)"
[2025-11-23 02:28:54] ID="centos"
[2025-11-23 02:28:54] ID_LIKE="rhel fedora"
[2025-11-23 02:28:54] VERSION_ID="7"
[2025-11-23 02:28:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:28:54] ANSI_COLOR="0;31"
[2025-11-23 02:28:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:28:54] HOME_URL="https://www.centos.org/"
[2025-11-23 02:28:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:28:54] 
[2025-11-23 02:28:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:28:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:28:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:28:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:28:54] 
[2025-11-23 02:28:54] 2025-11-23 07:28:23,159 | INFO     | ***************************************
[2025-11-23 02:28:54] 2025-11-23 07:28:23,662 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 02:28:54] 2025-11-23 07:28:23,679 | INFO     | sufficient remaining disk space (17464033280 B)
[2025-11-23 02:28:54] 2025-11-23 07:28:23,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:28:54] 2025-11-23 07:28:23,679 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:28:54] 2025-11-23 07:28:23,680 | INFO     | update_server=False
[2025-11-23 02:28:54] 2025-11-23 07:28:23,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:28:54] 2025-11-23 07:28:23,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:28:54] 2025-11-23 07:28:23,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:28:54] 2025-11-23 07:28:23,777 | INFO     | all job control threads have been joined
[2025-11-23 02:28:54] 2025-11-23 07:28:23,779 | INFO     | all data control threads have been joined
[2025-11-23 02:28:54] 2025-11-23 07:28:23,889 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 02:28:54] 2025-11-23 07:28:23,890 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 02:28:54] 2025-11-23 07:28:23,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:28:54] 2025-11-23 07:28:23,890 | INFO     | will abort loop
[2025-11-23 02:28:54] 2025-11-23 07:28:24,037 | INFO     | all payload control threads have been joined
[2025-11-23 02:28:54] 2025-11-23 07:28:24,685 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,686 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,781 | INFO     | [job] control thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,781 | INFO     | [data] control thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,800 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,812 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,880 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:24,895 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:25,042 | INFO     | [payload] control thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:25,228 | INFO     | [job] validate thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:25,474 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:25,686 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:25,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:26,021 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:26,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:26,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:28:54] 2025-11-23 07:28:30,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:28:54] 2025-11-23 07:28:42,700 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:28:54] 2025-11-23 07:28:43,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948024420160)>', '<ExcThread(monitor, started 139947583452928)>']
[2025-11-23 02:28:54] 2025-11-23 07:28:48,030 | INFO     | all workflow threads have been joined
[2025-11-23 02:28:54] 2025-11-23 07:28:48,037 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:28:54] 2025-11-23 07:28:48,037 | INFO     | traces error code: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:48,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:28:54] 2025-11-23 07:28:54,331 | INFO     | PID=1324 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 02:28:54] 2025-11-23 07:28:54,332 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:28:54] 2025-11-23 07:28:54,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:28:54] 2025-11-23 07:28:54,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:28:54] 2025-11-23 07:28:54,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:28:54] 2025-11-23 07:28:54,332 | INFO     | [monitor] control thread has ended
[2025-11-23 02:28:54] 2025-11-23 07:28:54,421 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:28:54] 2025-11-23 07:28:54,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:28:54] 2025-11-23 07:28:54,430 [wrapper] pilotpid: 1324
[2025-11-23 02:28:54] 2025-11-23 07:28:54,433 [wrapper] Pilot exit status: 0
[2025-11-23 02:28:54] 2025-11-23 07:28:54,447 [wrapper] pandaids: 6895341397
[2025-11-23 02:28:54] 2025-11-23 07:28:54,486 [wrapper] cleanup supervisor_pilot  9154 1325
[2025-11-23 02:28:54] 2025-11-23 07:28:54,490 [wrapper] Test setup, not cleaning
[2025-11-23 02:28:54] 2025-11-23 07:28:54,494 [wrapper] apfmon messages muted
[2025-11-23 02:28:54] 2025-11-23 07:28:54,498 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:28:54] 2025-11-23 07:28:54,502 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:28:54]  *** Error codes and diagnostics ***
[2025-11-23 02:28:54]     "exeErrorCode": 0,
[2025-11-23 02:28:54]     "exeErrorDiag": "",
[2025-11-23 02:28:54]     "pilotErrorCode": 0,
[2025-11-23 02:28:54]     "pilotErrorDiag": "",
[2025-11-23 02:28:54]  *** Listing of results directory ***
[2025-11-23 02:28:54] total 1318868
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-11-23 02:28:54] -rwx------ 1 boincer umatlas     36292 Nov 22 10:08 runpilot2-wrapper.sh
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 10:08 queuedata.json
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas       100 Nov 22 20:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:28:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 20:02 run_atlas
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas       105 Nov 22 20:02 job.xml
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas 410964283 Nov 22 20:02 EVNT.47483658._000401.pool.root.1
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 20:02 start_atlas.sh
[2025-11-23 02:28:54] drwxrwx--x 2 boincer umatlas      4096 Nov 22 20:02 shared
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 20:02 input.tar.gz
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas         0 Nov 22 20:02 boinc_lockfile
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 20:02 pandaJob.out
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas        57 Nov 22 20:02 setup.sh.local
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas    989784 Nov 22 20:03 agis_schedconf.cvmfs.json
[2025-11-23 02:28:54] drwx------ 5 boincer umatlas      4096 Nov 22 20:03 pilot3
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 02:18 init_data.xml
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas       533 Nov 23 02:19 boinc_task_state.xml
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas 924866855 Nov 23 02:27 HITS.47556137._003967.pool.root.1
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas      1065 Nov 23 02:28 memory_monitor_summary.json
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas   1526164 Nov 23 02:28 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas   2144770 Nov 23 02:28 log.47556137._003967.job.log.tgz.1
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas      8664 Nov 23 02:28 heartbeat.json
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 02:28 boinc_mmap_file
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas        29 Nov 23 02:28 wrapper_checkpoint.txt
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas       744 Nov 23 02:28 pilotlog.txt
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas        95 Nov 23 02:28 pilot_heartbeat.json
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas   3238904 Nov 23 02:28 log.47556137._003967.job.log.1
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas       353 Nov 23 02:28 output.list
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas       620 Nov 23 02:28 runtime_log
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas   5406720 Nov 23 02:28 result.tar.gz
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas       669 Nov 23 02:28 u9kKDm5O4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPDKKDmXB91Dn.diag
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas      9345 Nov 23 02:28 runtime_log.err
[2025-11-23 02:28:54] -rw-r--r-- 1 boincer umatlas     21285 Nov 23 02:28 stderr.txt
[2025-11-23 02:28:54] HITS file was successfully produced:
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas 924866855 Nov 23 02:27 shared/HITS.pool.root.1
[2025-11-23 02:28:54]  *** Contents of shared directory: ***
[2025-11-23 02:28:54] total 1310408
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas 410964283 Nov 22 20:02 ATLAS.root_0
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 20:02 start_atlas.sh
[2025-11-23 02:28:54] -rw-r--r-- 2 boincer umatlas    590097 Nov 22 20:02 input.tar.gz
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas 924866855 Nov 23 02:27 HITS.pool.root.1
[2025-11-23 02:28:54] -rw------- 1 boincer umatlas   5406720 Nov 23 02:28 result.tar.gz
02:28:56 (30049): run_atlas exited; CPU time 262643.149193
02:28:56 (30049): called boinc_finish(0)

</stderr_txt>
]]>

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