Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-22 20:05:55 (11760): vboxwrapper version 26210
2025-11-22 20:05:55 (11760): BOINC client version: 7.24.1
2025-11-22 20:05:56 (11760): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-11-22 20:05:56 (11760): Successfully copied 'init_data.xml' to the shared directory.
2025-11-22 20:05:56 (11760): Create VM. (boinc_f04abb2c92904ef5, slot#3)
2025-11-22 20:05:57 (11760): Setting Memory Size for VM. (4600MB)
2025-11-22 20:05:57 (11760): Setting CPU Count for VM. (6)
2025-11-22 20:05:57 (11760): Setting Chipset Options for VM.
2025-11-22 20:05:58 (11760): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-22 20:05:58 (11760): Setting Boot Options for VM.
2025-11-22 20:05:58 (11760): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-22 20:05:59 (11760): Enabling VM Network Access.
2025-11-22 20:05:59 (11760): Disabling USB Support for VM.
2025-11-22 20:05:59 (11760): Disabling COM Port Support for VM.
2025-11-22 20:06:00 (11760): Disabling LPT Port Support for VM.
2025-11-22 20:06:00 (11760): Disabling Audio Support for VM.
2025-11-22 20:06:00 (11760): Disabling Clipboard Support for VM.
2025-11-22 20:06:00 (11760): Disabling Drag and Drop Support for VM.
2025-11-22 20:06:01 (11760): Adding storage controller(s) to VM.
2025-11-22 20:06:01 (11760): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-22 20:06:03 (11760): Adding VirtualBox Guest Additions to VM.
2025-11-22 20:06:03 (11760): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-22 20:06:04 (11760): forwarding host port 45816 to guest port 80
2025-11-22 20:06:04 (11760): Enabling remote desktop for VM.
2025-11-22 20:06:04 (11760): Enabling shared directory for VM.
2025-11-22 20:06:05 (11760): Starting VM using VBoxManage interface. (boinc_f04abb2c92904ef5, slot#3)
2025-11-22 20:06:11 (11760): Successfully started VM. (PID = '13132')
2025-11-22 20:06:11 (11760): Reporting VM Process ID to BOINC.
2025-11-22 20:06:11 (11760): Guest Log: BIOS: VirtualBox 7.1.6
2025-11-22 20:06:11 (11760): Guest Log: CPUID EDX: 0x178bfbff
2025-11-22 20:06:11 (11760): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-22 20:06:11 (11760): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-22 20:06:11 (11760): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-22 20:06:11 (11760): Detected: Web Application Enabled (http://localhost:45816)
2025-11-22 20:06:11 (11760): Detected: Remote Desktop Enabled (localhost:45817)
2025-11-22 20:06:11 (11760): Preference change detected
2025-11-22 20:06:11 (11760): Setting CPU throttle for VM. (90%)
2025-11-22 20:06:11 (11760): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-22 20:06:13 (11760): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-22 20:06:13 (11760): Guest Log: BIOS: Booting from Hard Disk...
2025-11-22 20:06:16 (11760): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-22 20:06:16 (11760): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-22 20:06:16 (11760): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-22 20:06:21 (11760): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-22 20:06:21 (11760): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-22 20:06:26 (11760): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000154 main     Log opened 2025-11-22T20:06:24.567091000Z
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000279 main     OS Product: Linux
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000320 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000348 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000374 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000375 main     Process ID: 1347
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.000376 main     Package type: LINUX_64BITS_GENERIC
2025-11-22 20:06:26 (11760): Guest Log: 00:00:00.001259 main     5.2.32 r132073 started. Verbose level = 0
2025-11-22 20:06:26 (11760): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-22 20:06:26 (11760): Guest Log: [INFO] Mounting shared directory
2025-11-22 20:06:26 (11760): Guest Log: [INFO] Checking for init_data.xml
2025-11-22 20:06:29 (11760): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-22 20:06:29 (11760): Guest Log: [INFO] Detected branch: prod
2025-11-22 20:06:30 (11760): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-22 20:06:30 (11760): Guest Log: Copying input files
2025-11-22 20:06:33 (11760): Guest Log: Copied input files into RunAtlas.
2025-11-22 20:06:33 (11760): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-22 20:06:33 (11760): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-22 20:06:33 (11760): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-22 20:06:33 (11760): Guest Log: Further information can be found at the LHC@home message board.
2025-11-22 20:06:36 (11760): Guest Log: 00:00:10.005631 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 500 043 000ns (GuestNow=1 763 859 996 069 736 000 ns GuestLast=1 763 841 984 569 693 000 ns fSetTimeLastLoop=true )
2025-11-22 20:06:42 (11760): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-22 20:06:43 (11760): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-22 20:06:43 (11760): Guest Log: 2.6.3.0 1625 0 32200 153191 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-22 20:06:43 (11760): Guest Log: copied the webapp to /var/www
2025-11-22 20:06:43 (11760): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-22 20:06:43 (11760): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-22 20:06:44 (11760): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-22 20:06:44 (11760): Guest Log:  *** Starting ATLAS job. (PandaID=6894276355 taskID=47533967) ***
2025-11-22 22:36:11 (11760): Status Report: Elapsed Time: '6000.000000'
2025-11-22 22:36:11 (11760): Status Report: CPU Time: '22977.734375'
2025-11-23 01:00:33 (11760): Status Report: Elapsed Time: '12000.000000'
2025-11-23 01:00:33 (11760): Status Report: CPU Time: '46560.671875'
2025-11-23 03:18:25 (11760): Status Report: Elapsed Time: '18000.000000'
2025-11-23 03:18:25 (11760): Status Report: CPU Time: '69114.890625'
2025-11-23 05:43:19 (11760): Status Report: Elapsed Time: '24000.000000'
2025-11-23 05:43:19 (11760): Status Report: CPU Time: '92816.250000'
2025-11-23 08:09:59 (11760): Status Report: Elapsed Time: '30000.000000'
2025-11-23 08:09:59 (11760): Status Report: CPU Time: '116751.609375'
2025-11-23 10:35:34 (11760): Status Report: Elapsed Time: '36000.000000'
2025-11-23 10:35:34 (11760): Status Report: CPU Time: '140441.734375'
2025-11-23 12:55:57 (11760): Status Report: Elapsed Time: '42000.000000'
2025-11-23 12:55:57 (11760): Status Report: CPU Time: '163386.281250'
2025-11-23 15:07:33 (11760): Guest Log:  *** Job finished ***
2025-11-23 15:07:33 (11760): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:16,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:16,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:20,782 | INFO     | [monitor] cgroup control has ended
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:21,889 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529340061504)>', '<ExcThread(monitor, started 140528209344256)>']
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:22,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:22,845 | INFO     | [monitor] control thread has ended
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,892 | INFO     | all workflow threads have been joined
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,892 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,892 | INFO     | traces error code: 0
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,961 [wrapper] ==== pilot stdout END ====
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,965 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,969 [wrapper] pilotpid: 6043
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,972 [wrapper] Pilot exit status: 0
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:26,985 [wrapper] pandaids: 6894276355
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:27,011 [wrapper] cleanup supervisor_pilot 19507 6044
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:27,016 [wrapper] Test setup, not cleaning
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:27,020 [wrapper] apfmon messages muted
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:27,023 [wrapper] ==== wrapper stdout END ====
2025-11-23 15:07:33 (11760): Guest Log: 2025-11-23 20:07:27,028 [wrapper] ==== wrapper stderr END ====
2025-11-23 15:07:33 (11760): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 15:07:33 (11760): Guest Log:     "exeErrorCode": 0,
2025-11-23 15:07:33 (11760): Guest Log:     "exeErrorDiag": "",
2025-11-23 15:07:33 (11760): Guest Log:     "pilotErrorCode": 0,
2025-11-23 15:07:33 (11760): Guest Log:     "pilotErrorDiag": "",
2025-11-23 15:07:33 (11760): Guest Log:  *** Listing of results directory ***
2025-11-23 15:07:33 (11760): Guest Log: total 920408
2025-11-23 15:07:33 (11760): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 07:07 pilot3.tar.gz
2025-11-23 15:07:33 (11760): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 07:44 runpilot2-wrapper.sh
2025-11-23 15:07:33 (11760): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 07:44 queuedata.json
2025-11-23 15:07:33 (11760): Guest Log: -rwxr-xr-x. 1 atlas atlas      9208 Nov 23 01:06 init_data.xml
2025-11-23 15:07:33 (11760): Guest Log: -rwxr-xr-x. 1 atlas atlas    590095 Nov 23 01:06 input.tar.gz
2025-11-23 15:07:33 (11760): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 23 01:06 start_atlas.sh
2025-11-23 15:07:33 (11760): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 01:06 EVNT.47493127._002315.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 15:07:33 (11760): Guest Log: -rw-r--r--. 1 atlas atlas      2783 Nov 23 01:06 pandaJob.out
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 01:07 agis_schedconf.cvmfs.json
2025-11-23 15:07:33 (11760): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 01:07 pilot3
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas 919087971 Nov 23 20:05 HITS.47533967._002861.pool.root.1
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas      1046 Nov 23 20:06 memory_monitor_summary.json
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 20:06 agis_ddmendpoints.agis.ALL.json
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas   1932205 Nov 23 20:06 log.47533967._002861.job.log.tgz.1
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas      8638 Nov 23 20:06 heartbeat.json
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 20:07 pilot_heartbeat.json
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 23 20:07 pilotlog.txt
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas   7843952 Nov 23 20:07 log.47533967._002861.job.log.1
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 20:07 output.list
2025-11-23 15:07:33 (11760): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 20:07 runtime_log
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas   9799680 Nov 23 20:07 result.tar.gz
2025-11-23 15:07:33 (11760): Guest Log: -rw-r--r--. 1 atlas atlas      8749 Nov 23 20:07 runtime_log.err
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas       666 Nov 23 20:07 l8tLDmJ0ag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpCJKDmG9vDNn.diag
2025-11-23 15:07:33 (11760): Guest Log: Looking for outputfile HITS.47533967._002861.pool.root.1
2025-11-23 15:07:33 (11760): Guest Log: HITS file was successfully produced
2025-11-23 15:07:33 (11760): Guest Log: -rw-------. 1 atlas atlas 919087971 Nov 23 20:05 /home/atlas/RunAtlas/HITS.47533967._002861.pool.root.1
2025-11-23 15:07:41 (11760): Guest Log: Successfully finished the ATLAS job!
2025-11-23 15:07:41 (11760): Guest Log: Copying the results back to the shared directory!
2025-11-23 15:07:41 (11760): Guest Log:  *** Contents of shared directory: ***
2025-11-23 15:07:41 (11760): Guest Log: total 1308588
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root 410479842 Nov 23 01:05 ATLAS.root_0
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root 919087971 Nov 23 20:07 HITS.pool.root.1
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root      9208 Nov 23 01:05 init_data.xml
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root    590095 Nov 23 00:55 input.tar.gz
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root   9799680 Nov 23 20:07 result.tar.gz
2025-11-23 15:07:41 (11760): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 00:55 start_atlas.sh
2025-11-23 15:07:41 (11760): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 15:07:41 (11760): VM Completion File Detected.
2025-11-23 15:07:41 (11760): Powering off VM.
2025-11-23 15:07:43 (11760): Successfully stopped VM.
2025-11-23 15:07:43 (11760): Deregistering VM. (boinc_f04abb2c92904ef5, slot#3)
2025-11-23 15:07:43 (11760): Removing network bandwidth throttle group from VM.
2025-11-23 15:07:44 (11760): Removing VM from VirtualBox.
2025-11-23 15:07:54 (11760): called boinc_finish(0)

</stderr_txt>
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