Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:56:25 (1501989): wrapper (7.7.26015): starting
19:56:25 (1501989): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:56:25] Arguments: --nthreads 8
[2025-11-22 19:56:25] Threads: 8
[2025-11-22 19:56:25] Checking for CVMFS
[2025-11-22 19:56:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:56:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:56:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:56:27] 2.13.3.0 5206 2126 219088 153191 2 351 22077157 40960001 40822 16776704 0 19212733 99.830 6678744 25472 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 19:56:27] CVMFS is ok
[2025-11-22 19:56:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:56:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:56:27] Further information can be found at the LHC@home message board.
[2025-11-22 19:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:56:27] Checking for apptainer binary...
[2025-11-22 19:56:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:56:27] Running /usr/bin/apptainer --version
[2025-11-22 19:56:27] apptainer version 1.4.4-1.el9
[2025-11-22 19:56:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:56:28] lc-12-9.aglt2.org
[2025-11-22 19:56:28] apptainer works
[2025-11-22 19:56:28] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:56:28] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:56:28] Starting ATLAS job with PandaID=6895334151
[2025-11-22 19:56:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:04 (1501989): BOINC client no longer exists - exiting
20:20:04 (1501989): timer handler: client dead, exiting
20:28:34 (1594274): wrapper (7.7.26015): starting
20:28:34 (1594274): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 20:28:34] Arguments: --nthreads 9
[2025-11-22 20:28:34] Threads: 9
[2025-11-22 20:28:34] This job has been restarted, cleaning up previous attempt
[2025-11-22 20:28:34] Checking for CVMFS
[2025-11-22 20:28:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:28:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:28:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:28:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:28:36] 2.13.3.0 5206 2158 201740 153192 1 230 22341028 40960000 37932 16776704 0 19379698 99.831 6688416 25465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 20:28:36] CVMFS is ok
[2025-11-22 20:28:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:28:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:28:36] Further information can be found at the LHC@home message board.
[2025-11-22 20:28:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:28:36] Checking for apptainer binary...
[2025-11-22 20:28:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:28:36] Running /usr/bin/apptainer --version
[2025-11-22 20:28:36] apptainer version 1.4.4-1.el9
[2025-11-22 20:28:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:28:37] lc-12-9.aglt2.org
[2025-11-22 20:28:37] apptainer works
[2025-11-22 20:28:37] Set ATHENA_PROC_NUMBER=9
[2025-11-22 20:28:37] Set ATHENA_CORE_NUMBER=9
[2025-11-22 20:28:37] Starting ATLAS job with PandaID=6895334151
[2025-11-22 20:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:31:05]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:31:05] 2025-11-24 08:15:17,810 | INFO     | .. there are 79 such processes running
[2025-11-24 03:31:05] 2025-11-24 08:15:18,827 | INFO     | time since job start (110754s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:18,987 | INFO     | monitor loop #5112: job 0:6895334151 is in state 'finished'
[2025-11-24 03:31:05] 2025-11-24 08:15:18,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:31:05] 2025-11-24 08:15:20,851 | INFO     | time since job start (110756s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:21,509 | INFO     | monitor loop #5113: job 0:6895334151 is in state 'finished'
[2025-11-24 03:31:05] 2025-11-24 08:15:21,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:31:05] 2025-11-24 08:15:22,890 | INFO     | time since job start (110758s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:24,054 | INFO     | monitor loop #5114: job 0:6895334151 is in state 'finished'
[2025-11-24 03:31:05] 2025-11-24 08:15:24,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:31:05] 2025-11-24 08:15:24,897 | INFO     | time since job start (110760s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:26,569 | INFO     | monitor loop #5115: job 0:6895334151 is in state 'finished'
[2025-11-24 03:31:05] 2025-11-24 08:15:26,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:31:05] 2025-11-24 08:15:26,904 | INFO     | time since job start (110762s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:28,697 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 03:31:05] 2025-11-24 08:15:28,710 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2748.5915104166666
[2025-11-24 03:31:05] 2025-11-24 08:15:28,745 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895334151/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:31:05] 2025-11-24 08:15:28,747 | INFO     | extracted standard info from prmon json
[2025-11-24 03:31:05] 2025-11-24 08:15:28,747 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:31:05] 2025-11-24 08:15:28,747 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:31:05] 2025-11-24 08:15:28,809 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:31:05] 2025-11-24 08:15:28,815 | INFO     | sum of square deviations: 1850900877000.9343
[2025-11-24 03:31:05] 2025-11-24 08:15:28,923 | INFO     | time since job start (110764s) is within the limit (172800.0s)
[2025-11-24 03:31:05] 2025-11-24 08:15:28,944 | INFO     | sum of deviations: 6709700626569.835
[2025-11-24 03:31:05] 2025-11-24 08:15:28,948 | INFO     | mean x: 1763916765.0242558
[2025-11-24 03:31:05] 2025-11-24 08:15:28,949 | INFO     | mean y: 3042787.685777288
[2025-11-24 03:31:05] 2025-11-24 08:15:28,949 | INFO     | intersect: -6391331741.26114
[2025-11-24 03:31:05] 2025-11-24 08:15:28,951 | INFO     | chi2: 18.886847660282054
[2025-11-24 03:31:05] 2025-11-24 08:15:28,958 | INFO     | sum of square deviations: 1835640145015.801
[2025-11-24 03:31:05] 2025-11-24 08:15:29,090 | INFO     | monitor loop #5116: job 0:6895334151 is in state 'finished'
[2025-11-24 03:31:05] 2025-11-24 08:15:29,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:31:05] 2025-11-24 08:15:29,090 | INFO     | sum of deviations: 7377186700644.87
[2025-11-24 03:31:05] 2025-11-24 08:15:29,091 | INFO     | mean x: 1763916612.5367606
[2025-11-24 03:31:05] 2025-11-24 08:15:29,091 | INFO     | mean y: 3049456.1299060252
[2025-11-24 03:31:05] 2025-11-24 08:15:29,091 | INFO     | intersect: -7085890176.393073
[2025-11-24 03:31:05] 2025-11-24 08:15:29,093 | INFO     | chi2: 15.37393303406176
[2025-11-24 03:31:05] 2025-11-24 08:15:29,093 | INFO     | current chi2=15.37393303406176 (change=18.59979330276354 %)
[2025-11-24 03:31:05] 2025-11-24 08:15:29,093 | INFO     | right removable region: 1808
[2025-11-24 03:31:05] 2025-11-24 08:15:29,099 | INFO     | sum of square deviations: 1835635138745.8052
[2025-11-24 03:31:05] 2025-11-24 08:15:29,229 | INFO     | sum of deviations: 6034232294452.487
[2025-11-24 03:31:05] 2025-11-24 08:15:29,229 | INFO     | mean x: 1763916917.5367606
[2025-11-24 03:31:05] 2025-11-24 08:15:29,229 | INFO     | mean y: 3049534.2559425095
[2025-11-24 03:31:05] 2025-11-24 08:15:29,229 | INFO     | intersect: -5795425447.980355
[2025-11-24 03:31:05] 2025-11-24 08:15:29,231 | INFO     | chi2: 15.753740660216756
[2025-11-24 03:31:05] 2025-11-24 08:15:29,236 | INFO     | current chi2=15.753740660216756 (change=16.588829731782294 %)
[2025-11-24 03:31:05] 2025-11-24 08:15:29,236 | INFO     | left removable region: 10
[2025-11-24 03:31:05] 2025-11-24 08:15:29,238 | INFO     | sum of square deviations: 1802352921084.1501
[2025-11-24 03:31:05] 2025-11-24 08:15:29,353 | INFO     | sum of deviations: 6521653222217.874
[2025-11-24 03:31:05] 2025-11-24 08:15:29,354 | INFO     | mean x: 1763916887.0617352
[2025-11-24 03:31:05] 2025-11-24 08:15:29,354 | INFO     | mean y: 3060466.8659621803
[2025-11-24 03:31:05] 2025-11-24 08:15:29,354 | INFO     | intersect: -6379515395.862974
[2025-11-24 03:31:05] 2025-11-24 08:15:29,356 | INFO     | chi2: 11.083108641804724
[2025-11-24 03:31:05] 2025-11-24 08:15:29,356 | INFO     | current memory leak: 3.62 B/s (using 1798 data points, chi2=11.08)
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | could have reported an average CPU frequency of 2686 MHz (63 samples)
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | ..............................
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | . Timing measurements:
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | . get job = 0 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | . initial setup = 3 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,362 | INFO     | . payload setup = 28 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,363 | INFO     | . stage-in = 0 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,363 | INFO     | . payload execution = 110644 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,363 | INFO     | . stage-out = 9 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,363 | INFO     | . log creation = 3 s
[2025-11-24 03:31:05] 2025-11-24 08:15:29,363 | INFO     | ..............................
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | 
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | job summary report
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | --------------------------------------------------
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | PanDA job id: 6895334151
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | task id: 47556137
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | errors: (none)
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | pilot state: finished 
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | transexitcode: 0
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | exeerrorcode: 0
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | exeerrordiag: 
[2025-11-24 03:31:05] 2025-11-24 08:15:30,009 | INFO     | exitcode: 0
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | exitmsg: OK
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | cpuconsumptiontime: 268231 s
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | nevents: 1000
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | neventsw: 0
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | pid: 1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | pgrp: 1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | corecount: 9
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | event service: False
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | sizes: {0: 2298579, 1: 2298607, 2: 2298806, 13: 2298806, 20: 2299124, 24: 2299152, 110677: 2372639, 110678: 2372638, 110688: 2381688, 110689: 2381744, 110724: 2381
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | --------------------------------------------------
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | 
[2025-11-24 03:31:05] 2025-11-24 08:15:30,010 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:31:05] 2025-11-24 08:15:30,206 | INFO     | job 6895334151 has completed (purged errors)
[2025-11-24 03:31:05] 2025-11-24 08:15:30,206 | INFO     | overall cleanup function is called
[2025-11-24 03:31:05] 2025-11-24 08:15:31,263 | INFO     | --- collectZombieJob: --- 10, [1656051]
[2025-11-24 03:31:05] 2025-11-24 08:15:31,264 | INFO     | zombie collector waiting for pid 1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:31,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:31:05] 2025-11-24 08:15:31,264 | INFO     | collected zombie processes
[2025-11-24 03:31:05] 2025-11-24 08:15:31,264 | INFO     | will attempt to kill all subprocesses of pid=1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:36,113 | INFO     | process IDs to be killed: [1656051] (in reverse order)
[2025-11-24 03:31:05] 2025-11-24 08:15:36,989 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:31:05] 2025-11-24 08:15:37,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:31:05] 2025-11-24 08:15:37,197 | INFO     | did not find any defunct processes belonging to 1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:37,317 | INFO     | did not find any defunct processes belonging to 1656051
[2025-11-24 03:31:05] 2025-11-24 08:15:37,330 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:31:05] 2025-11-24 08:15:37,331 | INFO     | ready for new job
[2025-11-24 03:31:05] 2025-11-24 08:15:37,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:31:05] 2025-11-24 08:15:37,352 | INFO     | ***************************************
[2025-11-24 03:31:05] 2025-11-24 08:15:37,352 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:31:05] 2025-11-24 08:15:37,352 | INFO     | ***************************************
[2025-11-24 03:31:05] 2025-11-24 08:15:37,352 | INFO     | 
[2025-11-24 03:31:05] 2025-11-24 08:15:37,386 | INFO     | architecture information:
[2025-11-24 03:31:05] 2025-11-24 08:15:37,389 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:31:05] 2025-11-24 08:15:37,448 | INFO     | cat /etc/os-release:
[2025-11-24 03:31:05] NAME="CentOS Linux"
[2025-11-24 03:31:05] VERSION="7 (Core)"
[2025-11-24 03:31:05] ID="centos"
[2025-11-24 03:31:05] ID_LIKE="rhel fedora"
[2025-11-24 03:31:05] VERSION_ID="7"
[2025-11-24 03:31:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:31:05] ANSI_COLOR="0;31"
[2025-11-24 03:31:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:31:05] HOME_URL="https://www.centos.org/"
[2025-11-24 03:31:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:31:05] 
[2025-11-24 03:31:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:31:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:31:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:31:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:31:05] 
[2025-11-24 03:31:05] 2025-11-24 08:15:37,449 | INFO     | ***************************************
[2025-11-24 03:31:05] 2025-11-24 08:15:37,974 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 03:31:05] 2025-11-24 08:15:38,084 | INFO     | sufficient remaining disk space (389172690944 B)
[2025-11-24 03:31:05] 2025-11-24 08:15:38,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:31:05] 2025-11-24 08:15:38,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:31:05] 2025-11-24 08:15:38,085 | INFO     | update_server=False
[2025-11-24 03:31:05] 2025-11-24 08:15:38,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:31:05] 2025-11-24 08:15:38,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:31:05] 2025-11-24 08:15:38,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:31:05] 2025-11-24 08:15:38,086 | INFO     | aborting loop
[2025-11-24 03:31:05] 2025-11-24 08:15:38,162 | INFO     | all data control threads have been joined
[2025-11-24 03:31:05] 2025-11-24 08:15:38,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:31:05] 2025-11-24 08:15:39,091 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,096 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,167 | INFO     | [data] control thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,259 | INFO     | all payload control threads have been joined
[2025-11-24 03:31:05] 2025-11-24 08:15:39,359 | INFO     | all job control threads have been joined
[2025-11-24 03:31:05] 2025-11-24 08:15:39,655 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,669 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,690 | INFO     | [job] validate thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,697 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:39,733 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,094 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,265 | INFO     | [payload] control thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,297 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,368 | INFO     | [job] control thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:40,468 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:41,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:31:05] 2025-11-24 08:15:45,453 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:31:05] 2025-11-24 08:15:56,752 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:31:05] 2025-11-24 08:15:57,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457831712576)>', '<ExcThread(monitor, started 140457342383872)>']
[2025-11-24 03:31:05] 2025-11-24 08:16:02,639 | INFO     | all workflow threads have been joined
[2025-11-24 03:31:05] 2025-11-24 08:16:02,639 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:31:05] 2025-11-24 08:16:02,639 | INFO     | traces error code: 0
[2025-11-24 03:31:05] 2025-11-24 08:16:02,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | INFO     | PID=1617185 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | INFO     | .. there are 79 such processes running
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:31:05] 2025-11-24 08:16:10,678 | INFO     | [monitor] control thread has ended
[2025-11-24 03:31:05] 2025-11-24 08:16:10,868 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:31:05] 2025-11-24 08:16:10,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:31:05] 2025-11-24 08:16:10,916 [wrapper] pilotpid: 1617185
[2025-11-24 03:31:05] 2025-11-24 08:16:10,935 [wrapper] Pilot exit status: 0
[2025-11-24 03:31:05] 2025-11-24 08:16:11,002 [wrapper] pandaids: 6895334151 6895334151
[2025-11-24 03:31:05] 2025-11-24 08:16:11,294 [wrapper] cleanup supervisor_pilot 2840017 1617186
[2025-11-24 03:31:05] 2025-11-24 08:16:11,320 [wrapper] Test setup, not cleaning
[2025-11-24 03:31:05] 2025-11-24 08:16:11,344 [wrapper] apfmon messages muted
[2025-11-24 03:31:05] 2025-11-24 08:16:11,366 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:31:05] 2025-11-24 08:16:11,383 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:31:05]  *** Error codes and diagnostics ***
[2025-11-24 03:31:05]     "exeErrorCode": 0,
[2025-11-24 03:31:05]     "exeErrorDiag": "",
[2025-11-24 03:31:05]     "pilotErrorCode": 0,
[2025-11-24 03:31:05]     "pilotErrorDiag": "",
[2025-11-24 03:31:05]  *** Listing of results directory ***
[2025-11-24 03:31:05] total 1733076
[2025-11-24 03:31:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 21:56 pilot3.tar.gz
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 22:02 queuedata.json
[2025-11-24 03:31:05] -rwx------. 1 boincer umatlas     36292 Nov 21 22:03 runpilot2-wrapper.sh
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas       100 Nov 22 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:31:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 19:56 run_atlas
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas       105 Nov 22 19:56 job.xml
[2025-11-24 03:31:05] -rw-r--r--. 3 boincer umatlas 409768931 Nov 22 19:56 EVNT.47483658._000229.pool.root.1
[2025-11-24 03:31:05] -rw-r--r--. 3 boincer umatlas 409768931 Nov 22 19:56 ATLAS.root_0
[2025-11-24 03:31:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:56 start_atlas.sh
[2025-11-24 03:31:05] drwxrwx--x. 2 boincer umatlas        68 Nov 22 19:56 shared
[2025-11-24 03:31:05] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 19:56 input.tar.gz
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas         0 Nov 22 19:56 boinc_lockfile
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas      2782 Nov 22 20:28 pandaJob.out
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas    989784 Nov 22 20:29 agis_schedconf.cvmfs.json
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas       533 Nov 24 02:48 boinc_task_state.xml
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas 921973469 Nov 24 03:12 HITS.47556137._002251.pool.root.1
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas      1057 Nov 24 03:14 memory_monitor_summary.json
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas   1526164 Nov 24 03:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas   2704374 Nov 24 03:14 log.47556137._002251.job.log.tgz.1
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas      8616 Nov 24 03:15 heartbeat.json
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas        96 Nov 24 03:15 pilot_heartbeat.json
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas       823 Nov 24 03:16 pilotlog.txt
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas  11915748 Nov 24 03:16 log.47556137._002251.job.log.1
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas       353 Nov 24 03:16 output.list
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas       620 Nov 24 03:16 runtime_log
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas  14643200 Nov 24 03:16 result.tar.gz
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas      8899 Nov 24 03:16 runtime_log.err
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas       787 Nov 24 03:16 99vNDmt5sg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRtJKDmt1UjGn.diag
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas      6799 Nov 24 03:30 init_data.xml
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 03:30 boinc_mmap_file
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas        29 Nov 24 03:30 wrapper_checkpoint.txt
[2025-11-24 03:31:05] -rw-r--r--. 1 boincer umatlas     24075 Nov 24 03:31 stderr.txt
[2025-11-24 03:31:05] HITS file was successfully produced:
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas 921973469 Nov 24 03:12 shared/HITS.pool.root.1
[2025-11-24 03:31:05]  *** Contents of shared directory: ***
[2025-11-24 03:31:05] total 1315432
[2025-11-24 03:31:05] -rw-r--r--. 3 boincer umatlas 409768931 Nov 22 19:56 ATLAS.root_0
[2025-11-24 03:31:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:56 start_atlas.sh
[2025-11-24 03:31:05] -rw-r--r--. 2 boincer umatlas    590101 Nov 22 19:56 input.tar.gz
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas 921973469 Nov 24 03:12 HITS.pool.root.1
[2025-11-24 03:31:05] -rw-------. 1 boincer umatlas  14643200 Nov 24 03:16 result.tar.gz
03:31:07 (1594274): run_atlas exited; CPU time 273451.677934
03:31:07 (1594274): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN