Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:35:59 (1380849): wrapper (7.7.26015): starting
19:35:59 (1380849): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 19:36:00] Arguments: --nthreads 9
[2025-11-22 19:36:00] Threads: 9
[2025-11-22 19:36:00] Checking for CVMFS
[2025-11-22 19:36:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:36:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:36:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:36:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:36:02] 2.13.3.0 5206 2105 216460 153191 2 314 40678495 40960000 41486 16776704 0 19005477 99.831 6610286 25335 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 19:36:02] CVMFS is ok
[2025-11-22 19:36:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:36:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:36:02] Further information can be found at the LHC@home message board.
[2025-11-22 19:36:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:36:02] Checking for apptainer binary...
[2025-11-22 19:36:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:36:02] Running /usr/bin/apptainer --version
[2025-11-22 19:36:02] apptainer version 1.4.4-1.el9
[2025-11-22 19:36:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:36:03] lc-12-9.aglt2.org
[2025-11-22 19:36:03] apptainer works
[2025-11-22 19:36:03] Set ATHENA_PROC_NUMBER=9
[2025-11-22 19:36:03] Set ATHENA_CORE_NUMBER=9
[2025-11-22 19:36:03] Starting ATLAS job with PandaID=6895334145
[2025-11-22 19:36:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:20:10 (1380849): BOINC client no longer exists - exiting
20:20:10 (1380849): timer handler: client dead, exiting
20:28:34 (1594273): wrapper (7.7.26015): starting
20:28:34 (1594273): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 20:28:34] Arguments: --nthreads 9
[2025-11-22 20:28:34] Threads: 9
[2025-11-22 20:28:34] This job has been restarted, cleaning up previous attempt
[2025-11-22 20:28:34] Checking for CVMFS
[2025-11-22 20:28:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:28:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:28:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:28:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:28:36] 2.13.3.0 5206 2158 201740 153192 1 230 22341028 40960000 37932 16776704 0 19379701 99.831 6688416 25465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 20:28:36] CVMFS is ok
[2025-11-22 20:28:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 20:28:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 20:28:36] Further information can be found at the LHC@home message board.
[2025-11-22 20:28:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:28:36] Checking for apptainer binary...
[2025-11-22 20:28:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:28:36] Running /usr/bin/apptainer --version
[2025-11-22 20:28:36] apptainer version 1.4.4-1.el9
[2025-11-22 20:28:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:28:37] lc-12-9.aglt2.org
[2025-11-22 20:28:37] apptainer works
[2025-11-22 20:28:37] Set ATHENA_PROC_NUMBER=9
[2025-11-22 20:28:37] Set ATHENA_CORE_NUMBER=9
[2025-11-22 20:28:37] Starting ATLAS job with PandaID=6895334145
[2025-11-22 20:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:36:13]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:36:13] 2025-11-24 09:35:19,114 | INFO     | time since job start (115554s) is within the limit (172800.0s)
[2025-11-24 04:36:13] 2025-11-24 09:35:19,535 | INFO     | monitor loop #5377: job 0:6895334145 is in state 'finished'
[2025-11-24 04:36:13] 2025-11-24 09:35:19,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:36:13] 2025-11-24 09:35:21,120 | INFO     | time since job start (115556s) is within the limit (172800.0s)
[2025-11-24 04:36:13] 2025-11-24 09:35:22,041 | INFO     | monitor loop #5378: job 0:6895334145 is in state 'finished'
[2025-11-24 04:36:13] 2025-11-24 09:35:22,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:36:13] 2025-11-24 09:35:23,134 | INFO     | time since job start (115558s) is within the limit (172800.0s)
[2025-11-24 04:36:13] 2025-11-24 09:35:24,554 | INFO     | monitor loop #5379: job 0:6895334145 is in state 'finished'
[2025-11-24 04:36:13] 2025-11-24 09:35:24,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:36:13] 2025-11-24 09:35:25,166 | INFO     | time since job start (115560s) is within the limit (172800.0s)
[2025-11-24 04:36:13] 2025-11-24 09:35:27,092 | INFO     | monitor loop #5380: job 0:6895334145 is in state 'finished'
[2025-11-24 04:36:13] 2025-11-24 09:35:27,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:36:13] 2025-11-24 09:35:27,173 | INFO     | time since job start (115562s) is within the limit (172800.0s)
[2025-11-24 04:36:13] 2025-11-24 09:35:27,878 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 04:36:13] 2025-11-24 09:35:27,888 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2691.183677083334
[2025-11-24 04:36:13] 2025-11-24 09:35:27,929 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895334145/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 04:36:13] 2025-11-24 09:35:27,929 | INFO     | extracted standard info from prmon json
[2025-11-24 04:36:13] 2025-11-24 09:35:27,929 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 04:36:13] 2025-11-24 09:35:27,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 04:36:13] 2025-11-24 09:35:27,994 | INFO     | fitting pss+swap vs Time
[2025-11-24 04:36:13] 2025-11-24 09:35:27,996 | INFO     | sum of square deviations: 2103369496045.3242
[2025-11-24 04:36:13] 2025-11-24 09:35:28,586 | INFO     | sum of deviations: 7853189547641.216
[2025-11-24 04:36:13] 2025-11-24 09:35:28,586 | INFO     | mean x: 1763919175.8748019
[2025-11-24 04:36:13] 2025-11-24 09:35:28,587 | INFO     | mean y: 3068402.562070787
[2025-11-24 04:36:13] 2025-11-24 09:35:28,587 | INFO     | intersect: -6582741490.045312
[2025-11-24 04:36:13] 2025-11-24 09:35:28,644 | INFO     | chi2: 19.105208238717747
[2025-11-24 04:36:13] 2025-11-24 09:35:28,665 | INFO     | sum of square deviations: 2086748202855.0571
[2025-11-24 04:36:13] 2025-11-24 09:35:29,171 | INFO     | sum of deviations: 8560055604905.777
[2025-11-24 04:36:13] 2025-11-24 09:35:29,171 | INFO     | mean x: 1763919023.3850636
[2025-11-24 04:36:13] 2025-11-24 09:35:29,171 | INFO     | mean y: 3074886.459745763
[2025-11-24 04:36:13] 2025-11-24 09:35:29,171 | INFO     | intersect: -7232702243.751117
[2025-11-24 04:36:13] 2025-11-24 09:35:29,235 | INFO     | chi2: 15.546375836359372
[2025-11-24 04:36:13] 2025-11-24 09:35:29,235 | INFO     | current chi2=15.546375836359372 (change=18.627550968778277 %)
[2025-11-24 04:36:13] 2025-11-24 09:35:29,236 | INFO     | right removable region: 1887
[2025-11-24 04:36:13] 2025-11-24 09:35:29,250 | INFO     | sum of square deviations: 2086743728505.059
[2025-11-24 04:36:13] 2025-11-24 09:35:29,669 | INFO     | monitor loop #5381: job 0:6895334145 is in state 'finished'
[2025-11-24 04:36:13] 2025-11-24 09:35:29,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:36:13] 2025-11-24 09:35:29,811 | INFO     | sum of deviations: 7141561844693.115
[2025-11-24 04:36:13] 2025-11-24 09:35:29,811 | INFO     | mean x: 1763919328.3850636
[2025-11-24 04:36:13] 2025-11-24 09:35:29,811 | INFO     | mean y: 3074928.869173729
[2025-11-24 04:36:13] 2025-11-24 09:35:29,811 | INFO     | intersect: -6033669689.376811
[2025-11-24 04:36:13] 2025-11-24 09:35:29,827 | INFO     | chi2: 15.973080790544504
[2025-11-24 04:36:13] 2025-11-24 09:35:29,828 | INFO     | current chi2=15.973080790544504 (change=16.3941026396447 %)
[2025-11-24 04:36:13] 2025-11-24 09:35:29,828 | INFO     | left removable region: 10
[2025-11-24 04:36:13] 2025-11-24 09:35:29,835 | INFO     | sum of square deviations: 2050481651222.306
[2025-11-24 04:36:13] 2025-11-24 09:35:30,097 | INFO     | sum of deviations: 7649669961699.07
[2025-11-24 04:36:13] 2025-11-24 09:35:30,098 | INFO     | mean x: 1763919297.9057007
[2025-11-24 04:36:13] 2025-11-24 09:35:30,098 | INFO     | mean y: 3085618.8534896113
[2025-11-24 04:36:13] 2025-11-24 09:35:30,098 | INFO     | intersect: -6577514826.903752
[2025-11-24 04:36:13] 2025-11-24 09:35:30,100 | INFO     | chi2: 11.22032627510403
[2025-11-24 04:36:13] 2025-11-24 09:35:30,101 | INFO     | current memory leak: 3.73 B/s (using 1877 data points, chi2=11.22)
[2025-11-24 04:36:13] 2025-11-24 09:35:30,102 | INFO     | could have reported an average CPU frequency of 2689 MHz (66 samples)
[2025-11-24 04:36:13] 2025-11-24 09:35:30,102 | INFO     | ..............................
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . Timing measurements:
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . get job = 0 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . initial setup = 2 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . payload setup = 30 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . stage-in = 0 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . payload execution = 115440 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . stage-out = 8 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | . log creation = 1 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,103 | INFO     | ..............................
[2025-11-24 04:36:13] 2025-11-24 09:35:30,369 | INFO     | 
[2025-11-24 04:36:13] 2025-11-24 09:35:30,369 | INFO     | job summary report
[2025-11-24 04:36:13] 2025-11-24 09:35:30,369 | INFO     | --------------------------------------------------
[2025-11-24 04:36:13] 2025-11-24 09:35:30,369 | INFO     | PanDA job id: 6895334145
[2025-11-24 04:36:13] 2025-11-24 09:35:30,369 | INFO     | task id: 47556137
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | errors: (none)
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | pilot state: finished 
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | transexitcode: 0
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | exeerrorcode: 0
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | exeerrordiag: 
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | exitcode: 0
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | exitmsg: OK
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | cpuconsumptiontime: 273773 s
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | nevents: 1000
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | neventsw: 0
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | pid: 1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | pgrp: 1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:30,370 | INFO     | corecount: 9
[2025-11-24 04:36:13] 2025-11-24 09:35:30,371 | INFO     | event service: False
[2025-11-24 04:36:13] 2025-11-24 09:35:30,371 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 3: 2298812, 13: 2298840, 20: 2299158, 24: 2299314, 115475: 2374579, 115484: 2383601, 115486: 2383657, 115521: 2383903}
[2025-11-24 04:36:13] 2025-11-24 09:35:30,371 | INFO     | --------------------------------------------------
[2025-11-24 04:36:13] 2025-11-24 09:35:30,371 | INFO     | 
[2025-11-24 04:36:13] 2025-11-24 09:35:30,371 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 04:36:13] 2025-11-24 09:35:30,427 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,427 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,427 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,427 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 04:36:13] 2025-11-24 09:35:30,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 04:36:13] 2025-11-24 09:35:30,429 | INFO     | job 6895334145 has completed (purged errors)
[2025-11-24 04:36:13] 2025-11-24 09:35:30,429 | INFO     | overall cleanup function is called
[2025-11-24 04:36:13] 2025-11-24 09:35:31,498 | INFO     | --- collectZombieJob: --- 10, [1658238]
[2025-11-24 04:36:13] 2025-11-24 09:35:31,499 | INFO     | zombie collector waiting for pid 1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:31,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 04:36:13] 2025-11-24 09:35:31,499 | INFO     | collected zombie processes
[2025-11-24 04:36:13] 2025-11-24 09:35:31,499 | INFO     | will attempt to kill all subprocesses of pid=1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:32,815 | INFO     | PID=1617754 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 04:36:13] 2025-11-24 09:35:32,815 | INFO     | .. there are 86 such processes running
[2025-11-24 04:36:13] 2025-11-24 09:35:34,111 | INFO     | process IDs to be killed: [1658238] (in reverse order)
[2025-11-24 04:36:13] 2025-11-24 09:35:34,374 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 04:36:13] 2025-11-24 09:35:34,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 04:36:13] 2025-11-24 09:35:34,401 | INFO     | did not find any defunct processes belonging to 1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:34,436 | INFO     | did not find any defunct processes belonging to 1658238
[2025-11-24 04:36:13] 2025-11-24 09:35:34,445 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 04:36:13] 2025-11-24 09:35:34,446 | INFO     | ready for new job
[2025-11-24 04:36:13] 2025-11-24 09:35:34,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 04:36:13] 2025-11-24 09:35:34,455 | INFO     | ***************************************
[2025-11-24 04:36:13] 2025-11-24 09:35:34,461 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 04:36:13] 2025-11-24 09:35:34,461 | INFO     | ***************************************
[2025-11-24 04:36:13] 2025-11-24 09:35:34,461 | INFO     | 
[2025-11-24 04:36:13] 2025-11-24 09:35:34,470 | INFO     | architecture information:
[2025-11-24 04:36:13] 2025-11-24 09:35:34,471 | INFO     | executing command: cat /etc/os-release
[2025-11-24 04:36:13] 2025-11-24 09:35:34,550 | INFO     | cat /etc/os-release:
[2025-11-24 04:36:13] NAME="CentOS Linux"
[2025-11-24 04:36:13] VERSION="7 (Core)"
[2025-11-24 04:36:13] ID="centos"
[2025-11-24 04:36:13] ID_LIKE="rhel fedora"
[2025-11-24 04:36:13] VERSION_ID="7"
[2025-11-24 04:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 04:36:13] ANSI_COLOR="0;31"
[2025-11-24 04:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 04:36:13] HOME_URL="https://www.centos.org/"
[2025-11-24 04:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 04:36:13] 
[2025-11-24 04:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 04:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 04:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 04:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 04:36:13] 
[2025-11-24 04:36:13] 2025-11-24 09:35:34,550 | INFO     | ***************************************
[2025-11-24 04:36:13] 2025-11-24 09:35:35,053 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 04:36:13] 2025-11-24 09:35:35,095 | INFO     | sufficient remaining disk space (412339929088 B)
[2025-11-24 04:36:13] 2025-11-24 09:35:35,095 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 04:36:13] 2025-11-24 09:35:35,095 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 04:36:13] 2025-11-24 09:35:35,095 | INFO     | update_server=False
[2025-11-24 04:36:13] 2025-11-24 09:35:35,096 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:36:13] 2025-11-24 09:35:35,177 | INFO     | all data control threads have been joined
[2025-11-24 04:36:13] 2025-11-24 09:35:35,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:36:13] 2025-11-24 09:35:35,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:36:13] 2025-11-24 09:35:35,741 | INFO     | aborting loop
[2025-11-24 04:36:13] 2025-11-24 09:35:35,830 | INFO     | all payload control threads have been joined
[2025-11-24 04:36:13] 2025-11-24 09:35:36,108 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,191 | INFO     | [data] control thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,249 | INFO     | all job control threads have been joined
[2025-11-24 04:36:13] 2025-11-24 09:35:36,429 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,465 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,526 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,526 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:36:13] 2025-11-24 09:35:36,746 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:36,836 | INFO     | [payload] control thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,019 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,066 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,263 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,263 | INFO     | [job] control thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,529 | INFO     | [job] validate thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,563 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:37,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:36:13] 2025-11-24 09:35:38,601 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:35:41,773 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:36:13] 2025-11-24 09:36:05,852 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:36:13] 2025-11-24 09:36:06,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763030091584)>', '<ExcThread(monitor, started 139761708685056)>']
[2025-11-24 04:36:13] 2025-11-24 09:36:09,558 | INFO     | PID=1617754 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | INFO     | .. there are 86 such processes running
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:36:13] 2025-11-24 09:36:09,559 | INFO     | [monitor] control thread has ended
[2025-11-24 04:36:13] 2025-11-24 09:36:11,593 | INFO     | all workflow threads have been joined
[2025-11-24 04:36:13] 2025-11-24 09:36:11,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:36:13] 2025-11-24 09:36:11,593 | INFO     | traces error code: 0
[2025-11-24 04:36:13] 2025-11-24 09:36:11,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:36:13] 2025-11-24 09:36:12,604 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:36:13] 2025-11-24 09:36:12,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:36:13] 2025-11-24 09:36:12,647 [wrapper] pilotpid: 1617754
[2025-11-24 04:36:13] 2025-11-24 09:36:12,691 [wrapper] Pilot exit status: 0
[2025-11-24 04:36:13] 2025-11-24 09:36:12,805 [wrapper] pandaids: 6895334145 6895334145
[2025-11-24 04:36:13] 2025-11-24 09:36:13,241 [wrapper] cleanup supervisor_pilot 3267985 1617755
[2025-11-24 04:36:13] 2025-11-24 09:36:13,255 [wrapper] Test setup, not cleaning
[2025-11-24 04:36:13] 2025-11-24 09:36:13,269 [wrapper] apfmon messages muted
[2025-11-24 04:36:13] 2025-11-24 09:36:13,314 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:36:13] 2025-11-24 09:36:13,329 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:36:13]  *** Error codes and diagnostics ***
[2025-11-24 04:36:13]     "exeErrorCode": 0,
[2025-11-24 04:36:13]     "exeErrorDiag": "",
[2025-11-24 04:36:13]     "pilotErrorCode": 0,
[2025-11-24 04:36:13]     "pilotErrorDiag": "",
[2025-11-24 04:36:13]  *** Listing of results directory ***
[2025-11-24 04:36:13] total 1732452
[2025-11-24 04:36:13] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 21:56 queuedata.json
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 21:56 pilot3.tar.gz
[2025-11-24 04:36:13] -rwx------. 1 boincer umatlas     36292 Nov 21 21:59 runpilot2-wrapper.sh
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas       100 Nov 22 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:36:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 19:35 run_atlas
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas       105 Nov 22 19:35 job.xml
[2025-11-24 04:36:13] -rw-r--r--. 3 boincer umatlas 409392230 Nov 22 19:35 EVNT.47483658._000228.pool.root.1
[2025-11-24 04:36:13] -rw-r--r--. 3 boincer umatlas 409392230 Nov 22 19:35 ATLAS.root_0
[2025-11-24 04:36:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:35 start_atlas.sh
[2025-11-24 04:36:13] drwxrwx--x. 2 boincer umatlas        68 Nov 22 19:35 shared
[2025-11-24 04:36:13] -rw-r--r--. 2 boincer umatlas    590102 Nov 22 19:35 input.tar.gz
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas         0 Nov 22 19:35 boinc_lockfile
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 20:28 pandaJob.out
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas    989784 Nov 22 20:29 agis_schedconf.cvmfs.json
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas       533 Nov 24 04:02 boinc_task_state.xml
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas      6799 Nov 24 04:28 init_data.xml
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas 920853771 Nov 24 04:33 HITS.47556137._002245.pool.root.1
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas      1059 Nov 24 04:34 memory_monitor_summary.json
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas   1526164 Nov 24 04:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas   2754096 Nov 24 04:34 log.47556137._002245.job.log.tgz.1
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas        96 Nov 24 04:35 pilot_heartbeat.json
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas      8619 Nov 24 04:35 heartbeat.json
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas        29 Nov 24 04:36 wrapper_checkpoint.txt
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas      4825 Nov 24 04:36 pilotlog.txt
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 04:36 boinc_mmap_file
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas  12486736 Nov 24 04:36 log.47556137._002245.job.log.1
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas       353 Nov 24 04:36 output.list
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas       620 Nov 24 04:36 runtime_log
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas  15257600 Nov 24 04:36 result.tar.gz
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas      8899 Nov 24 04:36 runtime_log.err
[2025-11-24 04:36:13] -rw-------. 1 boincer umatlas       787 Nov 24 04:36 Ay2MDmv1sg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKtJKDmv0Gl7n.diag
[2025-11-24 04:36:13] -rw-r--r--. 1 boincer umatlas     24172 Nov 24 04:36 stderr.txt
[2025-11-24 04:36:34] HITS file was successfully produced:
[2025-11-24 04:36:34] -rw-------. 1 boincer umatlas 920853771 Nov 24 04:33 shared/HITS.pool.root.1
[2025-11-24 04:36:34]  *** Contents of shared directory: ***
[2025-11-24 04:36:34] total 1314568
[2025-11-24 04:36:34] -rw-r--r--. 3 boincer umatlas 409392230 Nov 22 19:35 ATLAS.root_0
[2025-11-24 04:36:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:35 start_atlas.sh
[2025-11-24 04:36:34] -rw-r--r--. 2 boincer umatlas    590102 Nov 22 19:35 input.tar.gz
[2025-11-24 04:36:34] -rw-------. 1 boincer umatlas 920853771 Nov 24 04:33 HITS.pool.root.1
[2025-11-24 04:36:34] -rw-------. 1 boincer umatlas  15257600 Nov 24 04:36 result.tar.gz
04:36:36 (1594273): run_atlas exited; CPU time 279553.191925
04:36:36 (1594273): called boinc_finish(0)

</stderr_txt>
]]>

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