Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:56:45 (1493): wrapper (7.7.26015): starting
19:56:45 (1493): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:56:45] Arguments: --nthreads 8
[2025-11-22 19:56:45] Threads: 8
[2025-11-22 19:56:45] Checking for CVMFS
[2025-11-22 19:56:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:56:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:56:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:56:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:56:45] 2.11.2.0 16446 112653 135220 153191 1 83 15780398 18432001 1859 130560 0 80144123 99.973 4699709 30057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 19:56:45] CVMFS is ok
[2025-11-22 19:56:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:56:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:56:45] Further information can be found at the LHC@home message board.
[2025-11-22 19:56:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:56:45] Checking for apptainer binary...
[2025-11-22 19:56:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:56:45] Running /usr/bin/apptainer --version
[2025-11-22 19:56:45] apptainer version 1.3.2-1.el7
[2025-11-22 19:56:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:56:46] c-206-26.aglt2.org
[2025-11-22 19:56:46] apptainer works
[2025-11-22 19:56:46] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:56:46] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:56:46] Starting ATLAS job with PandaID=6894274138
[2025-11-22 19:56:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 15:28:04]  *** The last 200 lines of the pilot log: ***
[2025-11-23 15:28:04] 2025-11-23 20:27:45,227 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 15:28:04] 2025-11-23 20:27:45,232 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2450.2083333333335
[2025-11-23 15:28:04] 2025-11-23 20:27:45,234 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894274138/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,235 | INFO     | extracted standard info from prmon json
[2025-11-23 15:28:04] 2025-11-23 20:27:45,235 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 15:28:04] 2025-11-23 20:27:45,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 15:28:04] 2025-11-23 20:27:45,250 | INFO     | fitting pss+swap vs Time
[2025-11-23 15:28:04] 2025-11-23 20:27:45,251 | INFO     | sum of square deviations: 472827461113.1295
[2025-11-23 15:28:04] 2025-11-23 20:27:45,277 | INFO     | sum of deviations: 2248300276985.9873
[2025-11-23 15:28:04] 2025-11-23 20:27:45,277 | INFO     | mean x: 1763894520.6576889
[2025-11-23 15:28:04] 2025-11-23 20:27:45,277 | INFO     | mean y: 2865171.8375325804
[2025-11-23 15:28:04] 2025-11-23 20:27:45,278 | INFO     | intersect: -8384474535.616326
[2025-11-23 15:28:04] 2025-11-23 20:27:45,279 | INFO     | chi2: 5.266428088022414
[2025-11-23 15:28:04] 2025-11-23 20:27:45,280 | INFO     | sum of square deviations: 466692442078.45667
[2025-11-23 15:28:04] 2025-11-23 20:27:45,303 | INFO     | sum of deviations: 2557428978465.9146
[2025-11-23 15:28:04] 2025-11-23 20:27:45,303 | INFO     | mean x: 1763894368.1605585
[2025-11-23 15:28:04] 2025-11-23 20:27:45,303 | INFO     | mean y: 2872852.1308900523
[2025-11-23 15:28:04] 2025-11-23 20:27:45,303 | INFO     | intersect: -9663095921.642988
[2025-11-23 15:28:04] 2025-11-23 20:27:45,304 | INFO     | chi2: 3.0848521804679017
[2025-11-23 15:28:04] 2025-11-23 20:27:45,305 | INFO     | current chi2=3.0848521804679017 (change=41.4242038644016 %)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,306 | INFO     | sum of square deviations: 460610726368.7654
[2025-11-23 15:28:04] 2025-11-23 20:27:45,338 | INFO     | sum of deviations: 2710502572864.578
[2025-11-23 15:28:04] 2025-11-23 20:27:45,338 | INFO     | mean x: 1763894215.663453
[2025-11-23 15:28:04] 2025-11-23 20:27:45,339 | INFO     | mean y: 2876689.3400525856
[2025-11-23 15:28:04] 2025-11-23 20:27:45,339 | INFO     | intersect: -10376907228.2169
[2025-11-23 15:28:04] 2025-11-23 20:27:45,340 | INFO     | chi2: 2.46007305682342
[2025-11-23 15:28:04] 2025-11-23 20:27:45,340 | INFO     | current chi2=2.46007305682342 (change=20.253130039758236 %)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,340 | INFO     | right removable region: 1140
[2025-11-23 15:28:04] 2025-11-23 20:27:45,341 | INFO     | sum of square deviations: 466692050275.7772
[2025-11-23 15:28:04] 2025-11-23 20:27:45,366 | INFO     | sum of deviations: 1952473886277.5713
[2025-11-23 15:28:04] 2025-11-23 20:27:45,366 | INFO     | mean x: 1763894673.1596859
[2025-11-23 15:28:04] 2025-11-23 20:27:45,366 | INFO     | mean y: 2872516.466841187
[2025-11-23 15:28:04] 2025-11-23 20:27:45,366 | INFO     | intersect: -7376636702.628059
[2025-11-23 15:28:04] 2025-11-23 20:27:45,367 | INFO     | chi2: 3.2547333018618794
[2025-11-23 15:28:04] 2025-11-23 20:27:45,367 | INFO     | current chi2=3.2547333018618794 (change=38.198466826800285 %)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,368 | INFO     | sum of square deviations: 460610082698.0597
[2025-11-23 15:28:04] 2025-11-23 20:27:45,394 | INFO     | sum of deviations: 1879332734857.56
[2025-11-23 15:28:04] 2025-11-23 20:27:45,395 | INFO     | mean x: 1763894825.6599474
[2025-11-23 15:28:04] 2025-11-23 20:27:45,395 | INFO     | mean y: 2874350.0297984225
[2025-11-23 15:28:04] 2025-11-23 20:27:45,395 | INFO     | intersect: -7193983494.008388
[2025-11-23 15:28:04] 2025-11-23 20:27:45,396 | INFO     | chi2: 3.2086118810348516
[2025-11-23 15:28:04] 2025-11-23 20:27:45,396 | INFO     | current chi2=3.2086118810348516 (change=1.4170568384403066 %)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,396 | INFO     | left removable region: 20
[2025-11-23 15:28:04] 2025-11-23 20:27:45,397 | INFO     | sum of square deviations: 435643396595.7722
[2025-11-23 15:28:04] 2025-11-23 20:27:45,430 | INFO     | sum of deviations: 2245544076114.7256
[2025-11-23 15:28:04] 2025-11-23 20:27:45,431 | INFO     | mean x: 1763894795.1642857
[2025-11-23 15:28:04] 2025-11-23 20:27:45,431 | INFO     | mean y: 2889259.8982142857
[2025-11-23 15:28:04] 2025-11-23 20:27:45,431 | INFO     | intersect: -9089188203.279839
[2025-11-23 15:28:04] 2025-11-23 20:27:45,433 | INFO     | chi2: 0.32706232058606444
[2025-11-23 15:28:04] 2025-11-23 20:27:45,433 | INFO     | current memory leak: 5.15 B/s (using 1120 data points, chi2=0.33)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,434 | INFO     | could have reported an average CPU frequency of 2629 MHz (42 samples)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | ..............................
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . Timing measurements:
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . get job = 0 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . initial setup = 2 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . payload setup = 5 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . stage-in = 0 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,435 | INFO     | . payload execution = 70212 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,436 | INFO     | . stage-out = 4 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,436 | INFO     | . log creation = 0 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,436 | INFO     | ..............................
[2025-11-23 15:28:04] 2025-11-23 20:27:45,580 | INFO     | time since job start (70247s) is within the limit (172800.0s)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,592 | INFO     | 
[2025-11-23 15:28:04] 2025-11-23 20:27:45,592 | INFO     | job summary report
[2025-11-23 15:28:04] 2025-11-23 20:27:45,593 | INFO     | --------------------------------------------------
[2025-11-23 15:28:04] 2025-11-23 20:27:45,593 | INFO     | PanDA job id: 6894274138
[2025-11-23 15:28:04] 2025-11-23 20:27:45,593 | INFO     | task id: 47533967
[2025-11-23 15:28:04] 2025-11-23 20:27:45,593 | INFO     | errors: (none)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | pilot state: finished 
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | transexitcode: 0
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | exeerrorcode: 0
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | exeerrordiag: 
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | exitcode: 0
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | exitmsg: OK
[2025-11-23 15:28:04] 2025-11-23 20:27:45,594 | INFO     | cpuconsumptiontime: 546835 s
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | nevents: 1000
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | neventsw: 0
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | pid: 11764
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | pgrp: 11764
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | corecount: 8
[2025-11-23 15:28:04] 2025-11-23 20:27:45,595 | INFO     | event service: False
[2025-11-23 15:28:04] 2025-11-23 20:27:45,596 | INFO     | sizes: {0: 2298573, 1: 2298828, 2: 2298828, 5: 2299118, 12: 2299174, 70221: 2355845, 70226: 2364839, 70227: 2364895, 70232: 2365141}
[2025-11-23 15:28:04] 2025-11-23 20:27:45,596 | INFO     | --------------------------------------------------
[2025-11-23 15:28:04] 2025-11-23 20:27:45,596 | INFO     | 
[2025-11-23 15:28:04] 2025-11-23 20:27:45,596 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 15:28:04] 2025-11-23 20:27:45,617 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,618 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,618 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,618 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 15:28:04] 2025-11-23 20:27:45,621 | INFO     | job 6894274138 has completed (purged errors)
[2025-11-23 15:28:04] 2025-11-23 20:27:45,621 | INFO     | overall cleanup function is called
[2025-11-23 15:28:04] 2025-11-23 20:27:46,639 | INFO     | --- collectZombieJob: --- 10, [11764]
[2025-11-23 15:28:04] 2025-11-23 20:27:46,640 | INFO     | zombie collector waiting for pid 11764
[2025-11-23 15:28:04] 2025-11-23 20:27:46,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 15:28:04] 2025-11-23 20:27:46,640 | INFO     | collected zombie processes
[2025-11-23 15:28:04] 2025-11-23 20:27:46,641 | INFO     | will attempt to kill all subprocesses of pid=11764
[2025-11-23 15:28:04] 2025-11-23 20:27:46,929 | INFO     | PID=5312 has CPU usage=19.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 15:28:04] 2025-11-23 20:27:46,930 | INFO     | .. there are 3 such processes running
[2025-11-23 15:28:04] 2025-11-23 20:27:46,963 | INFO     | process IDs to be killed: [11764] (in reverse order)
[2025-11-23 15:28:04] 2025-11-23 20:27:47,096 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 15:28:04] 2025-11-23 20:27:47,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 15:28:04] 2025-11-23 20:27:47,102 | INFO     | did not find any defunct processes belonging to 11764
[2025-11-23 15:28:04] 2025-11-23 20:27:47,107 | INFO     | did not find any defunct processes belonging to 11764
[2025-11-23 15:28:04] 2025-11-23 20:27:47,109 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 15:28:04] 2025-11-23 20:27:47,109 | INFO     | ready for new job
[2025-11-23 15:28:04] 2025-11-23 20:27:47,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 15:28:04] 2025-11-23 20:27:47,114 | INFO     | ***************************************
[2025-11-23 15:28:04] 2025-11-23 20:27:47,114 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 15:28:04] 2025-11-23 20:27:47,115 | INFO     | ***************************************
[2025-11-23 15:28:04] 2025-11-23 20:27:47,115 | INFO     | 
[2025-11-23 15:28:04] 2025-11-23 20:27:47,116 | INFO     | architecture information:
[2025-11-23 15:28:04] 2025-11-23 20:27:47,117 | INFO     | executing command: cat /etc/os-release
[2025-11-23 15:28:04] 2025-11-23 20:27:47,130 | INFO     | cat /etc/os-release:
[2025-11-23 15:28:04] NAME="CentOS Linux"
[2025-11-23 15:28:04] VERSION="7 (Core)"
[2025-11-23 15:28:04] ID="centos"
[2025-11-23 15:28:04] ID_LIKE="rhel fedora"
[2025-11-23 15:28:04] VERSION_ID="7"
[2025-11-23 15:28:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 15:28:04] ANSI_COLOR="0;31"
[2025-11-23 15:28:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 15:28:04] HOME_URL="https://www.centos.org/"
[2025-11-23 15:28:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 15:28:04] 
[2025-11-23 15:28:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 15:28:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 15:28:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 15:28:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 15:28:04] 
[2025-11-23 15:28:04] 2025-11-23 20:27:47,131 | INFO     | ***************************************
[2025-11-23 15:28:04] 2025-11-23 20:27:47,633 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 15:28:04] 2025-11-23 20:27:47,657 | INFO     | sufficient remaining disk space (24939331584 B)
[2025-11-23 15:28:04] 2025-11-23 20:27:47,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 15:28:04] 2025-11-23 20:27:47,658 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 15:28:04] 2025-11-23 20:27:47,658 | INFO     | update_server=False
[2025-11-23 15:28:04] 2025-11-23 20:27:47,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 15:28:04] 2025-11-23 20:27:47,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 15:28:04] 2025-11-23 20:27:47,659 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 15:28:04] 2025-11-23 20:27:47,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 15:28:04] 2025-11-23 20:27:47,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 15:28:04] 2025-11-23 20:27:47,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 15:28:04] 2025-11-23 20:27:47,842 | INFO     | all job control threads have been joined
[2025-11-23 15:28:04] 2025-11-23 20:27:47,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:28:04] 2025-11-23 20:27:47,997 | INFO     | aborting loop
[2025-11-23 15:28:04] 2025-11-23 20:27:48,234 | INFO     | all payload control threads have been joined
[2025-11-23 15:28:04] 2025-11-23 20:27:48,550 | INFO     | all data control threads have been joined
[2025-11-23 15:28:04] 2025-11-23 20:27:48,663 | INFO     | [job] retrieve thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:48,847 | INFO     | [job] control thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:48,857 | INFO     | [payload] validate_post thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,002 | INFO     | [job] job monitor thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,240 | INFO     | [payload] control thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,327 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,458 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,458 | INFO     | [job] validate thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,555 | INFO     | [data] control thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,805 | INFO     | [data] copytool_out thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,955 | INFO     | [payload] failed_post thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:49,958 | INFO     | [data] copytool_in thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:50,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:28:04] 2025-11-23 20:27:51,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 15:28:04] 2025-11-23 20:27:51,619 | INFO     | [job] queue monitor thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:54,519 | INFO     | [monitor] cgroup control has ended
[2025-11-23 15:28:04] 2025-11-23 20:27:55,116 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:58,293 | INFO     | job.realtimelogging is not enabled
[2025-11-23 15:28:04] 2025-11-23 20:27:59,302 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 15:28:04] 2025-11-23 20:27:59,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335722346304)>', '<ExcThread(monitor, started 140335279752960)>']
[2025-11-23 15:28:04] 2025-11-23 20:27:59,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 15:28:04] 2025-11-23 20:27:59,722 | INFO     | [monitor] control thread has ended
[2025-11-23 15:28:04] 2025-11-23 20:28:04,539 | INFO     | all workflow threads have been joined
[2025-11-23 15:28:04] 2025-11-23 20:28:04,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 15:28:04] 2025-11-23 20:28:04,540 | INFO     | traces error code: 0
[2025-11-23 15:28:04] 2025-11-23 20:28:04,540 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 15:28:04] 2025-11-23 20:28:04,676 [wrapper] ==== pilot stdout END ====
[2025-11-23 15:28:04] 2025-11-23 20:28:04,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 15:28:04] 2025-11-23 20:28:04,681 [wrapper] pilotpid: 5312
[2025-11-23 15:28:04] 2025-11-23 20:28:04,684 [wrapper] Pilot exit status: 0
[2025-11-23 15:28:04] 2025-11-23 20:28:04,691 [wrapper] pandaids: 6894274138
[2025-11-23 15:28:04] 2025-11-23 20:28:04,731 [wrapper] cleanup supervisor_pilot  8201 5313
[2025-11-23 15:28:04] 2025-11-23 20:28:04,733 [wrapper] Test setup, not cleaning
[2025-11-23 15:28:04] 2025-11-23 20:28:04,736 [wrapper] apfmon messages muted
[2025-11-23 15:28:04] 2025-11-23 20:28:04,738 [wrapper] ==== wrapper stdout END ====
[2025-11-23 15:28:04] 2025-11-23 20:28:04,741 [wrapper] ==== wrapper stderr END ====
[2025-11-23 15:28:04]  *** Error codes and diagnostics ***
[2025-11-23 15:28:04]     "exeErrorCode": 0,
[2025-11-23 15:28:04]     "exeErrorDiag": "",
[2025-11-23 15:28:04]     "pilotErrorCode": 0,
[2025-11-23 15:28:04]     "pilotErrorDiag": "",
[2025-11-23 15:28:04]  *** Listing of results directory ***
[2025-11-23 15:28:04] total 1320496
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 02:20 queuedata.json
[2025-11-23 15:28:04] -rwx------ 1 boincer umatlas     36292 Nov 21 02:21 runpilot2-wrapper.sh
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas       100 Nov 22 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 15:28:04] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 19:56 run_atlas
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas       105 Nov 22 19:56 job.xml
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas 409351175 Nov 22 19:56 EVNT.47493127._002303.pool.root.1
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:56 start_atlas.sh
[2025-11-23 15:28:04] drwxrwx--x 2 boincer umatlas      4096 Nov 22 19:56 shared
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 19:56 input.tar.gz
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas         0 Nov 22 19:56 boinc_lockfile
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas      2782 Nov 22 19:56 pandaJob.out
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas        57 Nov 22 19:56 setup.sh.local
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas    989784 Nov 22 19:56 agis_schedconf.cvmfs.json
[2025-11-23 15:28:04] drwx------ 5 boincer umatlas      4096 Nov 22 19:56 pilot3
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas       533 Nov 23 15:11 boinc_task_state.xml
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas      5954 Nov 23 15:22 init_data.xml
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas 914909208 Nov 23 15:26 HITS.47533967._002741.pool.root.1
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas        95 Nov 23 15:27 pilot_heartbeat.json
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas      1066 Nov 23 15:27 memory_monitor_summary.json
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas   1526164 Nov 23 15:27 agis_ddmendpoints.agis.ALL.json
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas   2305995 Nov 23 15:27 log.47533967._002741.job.log.tgz.1
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas      8673 Nov 23 15:27 heartbeat.json
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 15:28 boinc_mmap_file
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas        29 Nov 23 15:28 wrapper_checkpoint.txt
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas      4624 Nov 23 15:28 pilotlog.txt
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas   9696081 Nov 23 15:28 log.47533967._002741.job.log.1
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas       353 Nov 23 15:28 output.list
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas       620 Nov 23 15:28 runtime_log
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas  12021760 Nov 23 15:28 result.tar.gz
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas       668 Nov 23 15:28 wLiKDmRdag8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyQHKDmjVZ0Un.diag
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 15:28 runtime_log.err
[2025-11-23 15:28:04] -rw-r--r-- 1 boincer umatlas     21299 Nov 23 15:28 stderr.txt
[2025-11-23 15:28:04] HITS file was successfully produced:
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas 914909208 Nov 23 15:26 shared/HITS.pool.root.1
[2025-11-23 15:28:04]  *** Contents of shared directory: ***
[2025-11-23 15:28:04] total 1305568
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas 409351175 Nov 22 19:56 ATLAS.root_0
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:56 start_atlas.sh
[2025-11-23 15:28:04] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 19:56 input.tar.gz
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas 914909208 Nov 23 15:26 HITS.pool.root.1
[2025-11-23 15:28:04] -rw------- 1 boincer umatlas  12021760 Nov 23 15:28 result.tar.gz
15:28:06 (1493): run_atlas exited; CPU time 546240.552867
15:28:06 (1493): called boinc_finish(0)

</stderr_txt>
]]>

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