Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:49:48 (22541): wrapper (7.7.26015): starting
19:49:48 (22541): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:49:48] Arguments: --nthreads 8
[2025-11-22 19:49:48] Threads: 8
[2025-11-22 19:49:48] Checking for CVMFS
[2025-11-22 19:49:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:49:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:49:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:49:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:49:49] 2.11.2.0 2910 42398 80700 153191 0 81 11711415 20275200 1 130560 0 4788881 99.502 2875599 28261 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 19:49:49] CVMFS is ok
[2025-11-22 19:49:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:49:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:49:49] Further information can be found at the LHC@home message board.
[2025-11-22 19:49:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:49:49] Checking for apptainer binary...
[2025-11-22 19:49:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:49:49] Running /usr/bin/apptainer --version
[2025-11-22 19:49:49] apptainer version 1.3.2-1.el7
[2025-11-22 19:49:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:49:50] c-204-13.aglt2.org
[2025-11-22 19:49:50] apptainer works
[2025-11-22 19:49:50] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:49:50] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:49:50] Starting ATLAS job with PandaID=6895334087
[2025-11-22 19:49:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:22:29]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:22:29] 2025-11-23 13:21:37,026 | INFO     | intersect: -9583658403.632076
[2025-11-23 08:22:29] 2025-11-23 13:21:37,027 | INFO     | chi2: 6.847531147027718
[2025-11-23 08:22:29] 2025-11-23 13:21:37,027 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,028 | INFO     | sum of square deviations: 122621172642.67712
[2025-11-23 08:22:29] 2025-11-23 13:21:37,040 | INFO     | sum of deviations: 947637944345.4572
[2025-11-23 08:22:29] 2025-11-23 13:21:37,040 | INFO     | mean x: 1763881397.1893733
[2025-11-23 08:22:29] 2025-11-23 13:21:37,040 | INFO     | mean y: 3169657.622615804
[2025-11-23 08:22:29] 2025-11-23 13:21:37,040 | INFO     | intersect: -13628415371.926952
[2025-11-23 08:22:29] 2025-11-23 13:21:37,041 | INFO     | chi2: 3.697876106716462
[2025-11-23 08:22:29] 2025-11-23 13:21:37,041 | INFO     | current chi2=3.697876106716462 (change=45.99694360906142 %)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,042 | INFO     | sum of square deviations: 120132471002.78455
[2025-11-23 08:22:29] 2025-11-23 13:21:37,053 | INFO     | sum of deviations: 1091713964845.6182
[2025-11-23 08:22:29] 2025-11-23 13:21:37,053 | INFO     | mean x: 1763881244.6941016
[2025-11-23 08:22:29] 2025-11-23 13:21:37,053 | INFO     | mean y: 3178483.585733882
[2025-11-23 08:22:29] 2025-11-23 13:21:37,054 | INFO     | intersect: -16026241132.008345
[2025-11-23 08:22:29] 2025-11-23 13:21:37,054 | INFO     | chi2: 2.7226573352989623
[2025-11-23 08:22:29] 2025-11-23 13:21:37,055 | INFO     | current chi2=2.7226573352989623 (change=26.372402516304085 %)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,055 | INFO     | sum of square deviations: 117677632750.75545
[2025-11-23 08:22:29] 2025-11-23 13:21:37,066 | INFO     | sum of deviations: 1162864447875.8076
[2025-11-23 08:22:29] 2025-11-23 13:21:37,066 | INFO     | mean x: 1763881092.1975138
[2025-11-23 08:22:29] 2025-11-23 13:21:37,066 | INFO     | mean y: 3182895.3370165746
[2025-11-23 08:22:29] 2025-11-23 13:21:37,067 | INFO     | intersect: -17427101555.9252
[2025-11-23 08:22:29] 2025-11-23 13:21:37,067 | INFO     | chi2: 2.368896904049545
[2025-11-23 08:22:29] 2025-11-23 13:21:37,068 | INFO     | current chi2=2.368896904049545 (change=12.993204347199741 %)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,068 | INFO     | right removable region: 723
[2025-11-23 08:22:29] 2025-11-23 13:21:37,068 | INFO     | sum of square deviations: 122620863982.67711
[2025-11-23 08:22:29] 2025-11-23 13:21:37,080 | INFO     | sum of deviations: 459247473699.2594
[2025-11-23 08:22:29] 2025-11-23 13:21:37,080 | INFO     | mean x: 1763881702.1893733
[2025-11-23 08:22:29] 2025-11-23 13:21:37,080 | INFO     | mean y: 3166831.084468665
[2025-11-23 08:22:29] 2025-11-23 13:21:37,080 | INFO     | intersect: -6603035321.831838
[2025-11-23 08:22:29] 2025-11-23 13:21:37,081 | INFO     | chi2: 4.629828124147284
[2025-11-23 08:22:29] 2025-11-23 13:21:37,081 | INFO     | current chi2=4.629828124147284 (change=32.3868993840658 %)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,082 | INFO     | sum of square deviations: 120131943231.55577
[2025-11-23 08:22:29] 2025-11-23 13:21:37,093 | INFO     | sum of deviations: 416649899464.6046
[2025-11-23 08:22:29] 2025-11-23 13:21:37,093 | INFO     | mean x: 1763881854.691358
[2025-11-23 08:22:29] 2025-11-23 13:21:37,093 | INFO     | mean y: 3169439.984910837
[2025-11-23 08:22:29] 2025-11-23 13:21:37,093 | INFO     | intersect: -6114447387.439792
[2025-11-23 08:22:29] 2025-11-23 13:21:37,094 | INFO     | chi2: 4.59235708737975
[2025-11-23 08:22:29] 2025-11-23 13:21:37,094 | INFO     | current chi2=4.59235708737975 (change=0.8093396938884272 %)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,094 | INFO     | left removable region: 20
[2025-11-23 08:22:29] 2025-11-23 13:21:37,095 | INFO     | sum of square deviations: 107731724509.26909
[2025-11-23 08:22:29] 2025-11-23 13:21:37,106 | INFO     | sum of deviations: 847457814366.832
[2025-11-23 08:22:29] 2025-11-23 13:21:37,106 | INFO     | mean x: 1763881671.70128
[2025-11-23 08:22:29] 2025-11-23 13:21:37,106 | INFO     | mean y: 3202537.075391181
[2025-11-23 08:22:29] 2025-11-23 13:21:37,106 | INFO     | intersect: -13872146744.770264
[2025-11-23 08:22:29] 2025-11-23 13:21:37,107 | INFO     | chi2: 0.08413582263936496
[2025-11-23 08:22:29] 2025-11-23 13:21:37,107 | INFO     | current memory leak: 7.87 B/s (using 703 data points, chi2=0.08)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | could have reported an average CPU frequency of 2178 MHz (28 samples)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | ..............................
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | . Timing measurements:
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | . get job = 0 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | . initial setup = 2 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,108 | INFO     | . payload setup = 8 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,109 | INFO     | . stage-in = 0 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,109 | INFO     | . payload execution = 45047 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,109 | INFO     | . stage-out = 3 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,109 | INFO     | . log creation = 0 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,109 | INFO     | ..............................
[2025-11-23 08:22:29] 2025-11-23 13:21:37,200 | INFO     | 
[2025-11-23 08:22:29] 2025-11-23 13:21:37,201 | INFO     | job summary report
[2025-11-23 08:22:29] 2025-11-23 13:21:37,201 | INFO     | --------------------------------------------------
[2025-11-23 08:22:29] 2025-11-23 13:21:37,201 | INFO     | PanDA job id: 6895334087
[2025-11-23 08:22:29] 2025-11-23 13:21:37,201 | INFO     | task id: 47556149
[2025-11-23 08:22:29] 2025-11-23 13:21:37,202 | INFO     | errors: (none)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,202 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:22:29] 2025-11-23 13:21:37,202 | INFO     | pilot state: finished 
[2025-11-23 08:22:29] 2025-11-23 13:21:37,202 | INFO     | transexitcode: 0
[2025-11-23 08:22:29] 2025-11-23 13:21:37,203 | INFO     | exeerrorcode: 0
[2025-11-23 08:22:29] 2025-11-23 13:21:37,203 | INFO     | exeerrordiag: 
[2025-11-23 08:22:29] 2025-11-23 13:21:37,203 | INFO     | exitcode: 0
[2025-11-23 08:22:29] 2025-11-23 13:21:37,203 | INFO     | exitmsg: OK
[2025-11-23 08:22:29] 2025-11-23 13:21:37,204 | INFO     | cpuconsumptiontime: 346893 s
[2025-11-23 08:22:29] 2025-11-23 13:21:37,204 | INFO     | nevents: 1000
[2025-11-23 08:22:29] 2025-11-23 13:21:37,204 | INFO     | neventsw: 0
[2025-11-23 08:22:29] 2025-11-23 13:21:37,204 | INFO     | pid: 2462
[2025-11-23 08:22:29] 2025-11-23 13:21:37,204 | INFO     | pgrp: 2462
[2025-11-23 08:22:29] 2025-11-23 13:21:37,205 | INFO     | corecount: 8
[2025-11-23 08:22:29] 2025-11-23 13:21:37,205 | INFO     | event service: False
[2025-11-23 08:22:29] 2025-11-23 13:21:37,205 | INFO     | sizes: {0: 2298805, 6: 2299067, 11: 2299095, 45059: 2345048, 45060: 2345047, 45064: 2354281, 45071: 2354471}
[2025-11-23 08:22:29] 2025-11-23 13:21:37,205 | INFO     | --------------------------------------------------
[2025-11-23 08:22:29] 2025-11-23 13:21:37,205 | INFO     | 
[2025-11-23 08:22:29] 2025-11-23 13:21:37,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 08:22:29] 2025-11-23 13:21:37,214 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6895334087: 8296680 B (within 2537553920 B limit)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,215 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6895334087/HITS.47556149._000442.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,215 | INFO     | total size of present files: 0 B (workdir size: 8296680 B)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,215 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6895334087/HITS.47556149._000442.pool.root.1 since it does not exist
[2025-11-23 08:22:29] 2025-11-23 13:21:37,235 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,235 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,236 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,236 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,236 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,236 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,237 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,237 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,237 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,238 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,238 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,238 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,238 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:22:29] 2025-11-23 13:21:37,240 | INFO     | job 6895334087 has completed (purged errors)
[2025-11-23 08:22:29] 2025-11-23 13:21:37,241 | INFO     | overall cleanup function is called
[2025-11-23 08:22:29] 2025-11-23 13:21:37,340 | INFO     | number of running child processes to parent process 2462: 1
[2025-11-23 08:22:29] 2025-11-23 13:21:37,340 | INFO     | maximum number of monitored processes: 16
[2025-11-23 08:22:29] 2025-11-23 13:21:37,340 | INFO     | aborting job monitoring since job object (job id=6895334087) has expired
[2025-11-23 08:22:29] 2025-11-23 13:21:38,261 | INFO     | --- collectZombieJob: --- 10, [2462]
[2025-11-23 08:22:29] 2025-11-23 13:21:38,261 | INFO     | zombie collector waiting for pid 2462
[2025-11-23 08:22:29] 2025-11-23 13:21:38,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:22:29] 2025-11-23 13:21:38,262 | INFO     | collected zombie processes
[2025-11-23 08:22:29] 2025-11-23 13:21:38,262 | INFO     | will attempt to kill all subprocesses of pid=2462
[2025-11-23 08:22:29] 2025-11-23 13:21:38,357 | INFO     | process IDs to be killed: [2462] (in reverse order)
[2025-11-23 08:22:29] 2025-11-23 13:21:38,403 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:22:29] 2025-11-23 13:21:38,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:22:29] 2025-11-23 13:21:38,408 | INFO     | did not find any defunct processes belonging to 2462
[2025-11-23 08:22:29] 2025-11-23 13:21:38,411 | INFO     | did not find any defunct processes belonging to 2462
[2025-11-23 08:22:29] 2025-11-23 13:21:38,413 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:22:29] 2025-11-23 13:21:38,413 | INFO     | ready for new job
[2025-11-23 08:22:29] 2025-11-23 13:21:38,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:22:29] 2025-11-23 13:21:38,418 | INFO     | ***************************************
[2025-11-23 08:22:29] 2025-11-23 13:21:38,418 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:22:29] 2025-11-23 13:21:38,418 | INFO     | ***************************************
[2025-11-23 08:22:29] 2025-11-23 13:21:38,418 | INFO     | 
[2025-11-23 08:22:29] 2025-11-23 13:21:38,419 | INFO     | architecture information:
[2025-11-23 08:22:29] 2025-11-23 13:21:38,420 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:22:29] 2025-11-23 13:21:38,437 | INFO     | cat /etc/os-release:
[2025-11-23 08:22:29] NAME="CentOS Linux"
[2025-11-23 08:22:29] VERSION="7 (Core)"
[2025-11-23 08:22:29] ID="centos"
[2025-11-23 08:22:29] ID_LIKE="rhel fedora"
[2025-11-23 08:22:29] VERSION_ID="7"
[2025-11-23 08:22:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:22:29] ANSI_COLOR="0;31"
[2025-11-23 08:22:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:22:29] HOME_URL="https://www.centos.org/"
[2025-11-23 08:22:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:22:29] 
[2025-11-23 08:22:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:22:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:22:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:22:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:22:29] 
[2025-11-23 08:22:29] 2025-11-23 13:21:38,437 | INFO     | ***************************************
[2025-11-23 08:22:29] 2025-11-23 13:21:38,938 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 08:22:29] 2025-11-23 13:21:38,957 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-23 08:22:29] 2025-11-23 13:21:38,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:22:29] 2025-11-23 13:21:38,958 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:22:29] 2025-11-23 13:21:38,958 | INFO     | update_server=False
[2025-11-23 08:22:29] 2025-11-23 13:21:38,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:22:29] 2025-11-23 13:21:38,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:22:29] 2025-11-23 13:21:38,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:22:29] 2025-11-23 13:21:38,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:22:29] 2025-11-23 13:21:38,960 | INFO     | aborting loop
[2025-11-23 08:22:29] 2025-11-23 13:21:39,021 | INFO     | all payload control threads have been joined
[2025-11-23 08:22:29] 2025-11-23 13:21:39,834 | INFO     | all data control threads have been joined
[2025-11-23 08:22:29] 2025-11-23 13:21:39,964 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:39,966 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:39,966 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,027 | INFO     | [payload] control thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,579 | INFO     | all job control threads have been joined
[2025-11-23 08:22:29] 2025-11-23 13:21:40,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,791 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:22:29] 2025-11-23 13:21:40,830 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,840 | INFO     | [data] control thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,845 | INFO     | [job] validate thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,909 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,966 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:40,981 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:41,024 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:41,272 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:41,585 | INFO     | [job] control thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:21:44,835 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:22:29] 2025-11-23 13:22:10,056 | INFO     | PID=26728 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 08:22:29] 2025-11-23 13:22:10,056 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:22:29] 2025-11-23 13:22:10,056 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:22:29] 2025-11-23 13:22:10,056 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:22:29] 2025-11-23 13:22:22,848 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:22:29] 2025-11-23 13:22:23,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503940413248)>', '<ExcThread(monitor, started 140503186130688)>']
[2025-11-23 08:22:29] 2025-11-23 13:22:24,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:22:29] 2025-11-23 13:22:24,127 | INFO     | [monitor] control thread has ended
[2025-11-23 08:22:29] 2025-11-23 13:22:28,596 | INFO     | all workflow threads have been joined
[2025-11-23 08:22:29] 2025-11-23 13:22:28,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:22:29] 2025-11-23 13:22:28,597 | INFO     | traces error code: 0
[2025-11-23 08:22:29] 2025-11-23 13:22:28,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:22:29] 2025-11-23 13:22:28,735 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:22:29] 2025-11-23 13:22:28,741 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:22:29] 2025-11-23 13:22:28,746 [wrapper] pilotpid: 26728
[2025-11-23 08:22:29] 2025-11-23 13:22:28,752 [wrapper] Pilot exit status: 0
[2025-11-23 08:22:29] 2025-11-23 13:22:28,770 [wrapper] pandaids: 6895334087
[2025-11-23 08:22:29] 2025-11-23 13:22:28,819 [wrapper] cleanup supervisor_pilot  1156 26729
[2025-11-23 08:22:29] 2025-11-23 13:22:28,824 [wrapper] Test setup, not cleaning
[2025-11-23 08:22:29] 2025-11-23 13:22:28,829 [wrapper] apfmon messages muted
[2025-11-23 08:22:29] 2025-11-23 13:22:28,835 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:22:29] 2025-11-23 13:22:28,839 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:22:29]  *** Error codes and diagnostics ***
[2025-11-23 08:22:29]     "exeErrorCode": 0,
[2025-11-23 08:22:29]     "exeErrorDiag": "",
[2025-11-23 08:22:29]     "pilotErrorCode": 0,
[2025-11-23 08:22:29]     "pilotErrorDiag": "",
[2025-11-23 08:22:29]  *** Listing of results directory ***
[2025-11-23 08:22:29] total 1320976
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 21:36 pilot3.tar.gz
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 21:38 queuedata.json
[2025-11-23 08:22:29] -rwx------ 1 boincer umatlas     36292 Nov 21 21:38 runpilot2-wrapper.sh
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas       100 Nov 22 19:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:22:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 19:49 run_atlas
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas       105 Nov 22 19:49 job.xml
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas 409592414 Nov 22 19:49 EVNT.47483658._001058.pool.root.1
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:49 start_atlas.sh
[2025-11-23 08:22:29] drwxrwx--x 2 boincer umatlas      4096 Nov 22 19:49 shared
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 19:49 input.tar.gz
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas         0 Nov 22 19:49 boinc_lockfile
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 19:49 pandaJob.out
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas        57 Nov 22 19:49 setup.sh.local
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas    989784 Nov 22 19:50 agis_schedconf.cvmfs.json
[2025-11-23 08:22:29] drwx------ 5 boincer umatlas      4096 Nov 22 19:50 pilot3
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas       533 Nov 23 08:06 boinc_task_state.xml
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 08:20 init_data.xml
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas 922798756 Nov 23 08:20 HITS.47556149._000442.pool.root.1
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas      1062 Nov 23 08:21 memory_monitor_summary.json
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas   1526164 Nov 23 08:21 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas        95 Nov 23 08:21 pilot_heartbeat.json
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas   1983707 Nov 23 08:21 log.47556149._000442.job.log.tgz.1
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas      8658 Nov 23 08:21 heartbeat.json
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 08:22 boinc_mmap_file
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas        29 Nov 23 08:22 wrapper_checkpoint.txt
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas      4746 Nov 23 08:22 pilotlog.txt
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas   6196868 Nov 23 08:22 log.47556149._000442.job.log.1
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas       353 Nov 23 08:22 output.list
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas       620 Nov 23 08:22 runtime_log
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas   8202240 Nov 23 08:22 result.tar.gz
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 08:22 runtime_log.err
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas       668 Nov 23 08:22 I7BODmAhsg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7sJKDmKZQxIn.diag
[2025-11-23 08:22:29] -rw-r--r-- 1 boincer umatlas     21498 Nov 23 08:22 stderr.txt
[2025-11-23 08:22:29] HITS file was successfully produced:
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas 922798756 Nov 23 08:20 shared/HITS.pool.root.1
[2025-11-23 08:22:29]  *** Contents of shared directory: ***
[2025-11-23 08:22:29] total 1309780
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas 409592414 Nov 22 19:49 ATLAS.root_0
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 19:49 start_atlas.sh
[2025-11-23 08:22:29] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 19:49 input.tar.gz
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas 922798756 Nov 23 08:20 HITS.pool.root.1
[2025-11-23 08:22:29] -rw------- 1 boincer umatlas   8202240 Nov 23 08:22 result.tar.gz
08:22:30 (22541): run_atlas exited; CPU time 344399.489868
08:22:30 (22541): called boinc_finish(0)

</stderr_txt>
]]>

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