Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:05:02 (1094879): wrapper (7.7.26015): starting
20:05:02 (1094879): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:05:02] Arguments: --nthreads 3
[2025-11-25 20:05:02] Threads: 3
[2025-11-25 20:05:02] Checking for CVMFS
[2025-11-25 20:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:05:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:05:02] 2.9.2.0 3943730 10126 86144 153293 2 81 29927584 36864000 0 130560 0 3743175 99.932 520843 4704 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:05:02] CVMFS is ok
[2025-11-25 20:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:05:02] Further information can be found at the LHC@home message board.
[2025-11-25 20:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:05:02] Checking for apptainer binary...
[2025-11-25 20:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:05:02] Running /usr/bin/apptainer --version
[2025-11-25 20:05:02] apptainer version 1.4.1-1.1
[2025-11-25 20:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:05:02] thA331a
[2025-11-25 20:05:02] apptainer works
[2025-11-25 20:05:02] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:05:02] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:05:02] Starting ATLAS job with PandaID=6893935683
[2025-11-25 20:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:43:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:43:27] 2025-11-25 22:42:43,363 | INFO     | process IDs to be killed: [1105044] (in reverse order)
[2025-11-25 23:43:27] 2025-11-25 22:42:43,386 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:43:27] 2025-11-25 22:42:43,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:43:27] 2025-11-25 22:42:43,388 | INFO     | did not find any defunct processes belonging to 1105044
[2025-11-25 23:43:27] 2025-11-25 22:42:43,389 | INFO     | did not find any defunct processes belonging to 1105044
[2025-11-25 23:43:27] 2025-11-25 22:42:43,389 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:43:27] 2025-11-25 22:42:43,389 | INFO     | ready for new job
[2025-11-25 23:43:27] 2025-11-25 22:42:43,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:43:27] 2025-11-25 22:42:43,390 | INFO     | ***************************************
[2025-11-25 23:43:27] 2025-11-25 22:42:43,390 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:43:27] 2025-11-25 22:42:43,390 | INFO     | ***************************************
[2025-11-25 23:43:27] 2025-11-25 22:42:43,390 | INFO     | 
[2025-11-25 23:43:27] 2025-11-25 22:42:43,391 | INFO     | architecture information:
[2025-11-25 23:43:27] 2025-11-25 22:42:43,391 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:43:27] 2025-11-25 22:42:43,399 | INFO     | cat /etc/os-release:
[2025-11-25 23:43:27] NAME="CentOS Linux"
[2025-11-25 23:43:27] VERSION="7 (Core)"
[2025-11-25 23:43:27] ID="centos"
[2025-11-25 23:43:27] ID_LIKE="rhel fedora"
[2025-11-25 23:43:27] VERSION_ID="7"
[2025-11-25 23:43:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:43:27] ANSI_COLOR="0;31"
[2025-11-25 23:43:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:43:27] HOME_URL="https://www.centos.org/"
[2025-11-25 23:43:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:43:27] 
[2025-11-25 23:43:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:43:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:43:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:43:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:43:27] 
[2025-11-25 23:43:27] 2025-11-25 22:42:43,399 | INFO     | ***************************************
[2025-11-25 23:43:27] 2025-11-25 22:42:43,902 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | INFO     | sufficient remaining disk space (328005058560 B)
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | INFO     | update_server=False
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:43:27] 2025-11-25 22:42:43,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:43:27] 2025-11-25 22:42:44,281 | INFO     | all job control threads have been joined
[2025-11-25 23:43:27] 2025-11-25 22:42:44,401 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 23:43:27] 2025-11-25 22:42:44,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 23:43:27] 2025-11-25 22:42:44,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:43:27] 2025-11-25 22:42:44,401 | INFO     | will abort loop
[2025-11-25 23:43:27] 2025-11-25 22:42:44,523 | INFO     | all data control threads have been joined
[2025-11-25 23:43:27] 2025-11-25 22:42:44,724 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:43:27] 2025-11-25 22:42:44,884 | INFO     | all payload control threads have been joined
[2025-11-25 23:43:27] 2025-11-25 22:42:44,921 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:44,921 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:44,959 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,002 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,287 | INFO     | [job] control thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,407 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,529 | INFO     | [data] control thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,541 | INFO     | [job] validate thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,548 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,556 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,558 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,630 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,890 | INFO     | [payload] control thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:45,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:43:27] 2025-11-25 22:42:46,364 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:46,730 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:42:49,950 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:43:27] 2025-11-25 22:43:14,112 | INFO     | PID=1098594 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:43:27] 2025-11-25 22:43:14,113 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:43:27] 2025-11-25 22:43:14,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:43:27] 2025-11-25 22:43:14,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:43:27] 2025-11-25 22:43:22,642 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:43:27] 2025-11-25 22:43:22,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139691245918016)>', '<ExcThread(monitor, started 139690875262720)>']
[2025-11-25 23:43:27] 2025-11-25 22:43:23,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:43:27] 2025-11-25 22:43:23,154 | INFO     | [monitor] control thread has ended
[2025-11-25 23:43:27] 2025-11-25 22:43:27,673 | INFO     | all workflow threads have been joined
[2025-11-25 23:43:27] 2025-11-25 22:43:27,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:43:27] 2025-11-25 22:43:27,673 | INFO     | traces error code: 0
[2025-11-25 23:43:27] 2025-11-25 22:43:27,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:43:27] 2025-11-25 22:43:27,723 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:43:27] 2025-11-25 22:43:27,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:43:27] 2025-11-25 22:43:27,728 [wrapper] pilotpid: 1098594
[2025-11-25 23:43:27] 2025-11-25 22:43:27,730 [wrapper] Pilot exit status: 0
[2025-11-25 23:43:27] 2025-11-25 22:43:27,737 [wrapper] pandaids: 6893935683
[2025-11-25 23:43:27] 2025-11-25 22:43:27,753 [wrapper] cleanup supervisor_pilot 1128220 1098595
[2025-11-25 23:43:27] 2025-11-25 22:43:27,755 [wrapper] Test setup, not cleaning
[2025-11-25 23:43:27] 2025-11-25 22:43:27,757 [wrapper] apfmon messages muted
[2025-11-25 23:43:27] 2025-11-25 22:43:27,760 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:43:27] 2025-11-25 22:43:27,762 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:43:27]  *** Error codes and diagnostics ***
[2025-11-25 23:43:27]     "exeErrorCode": 0,
[2025-11-25 23:43:27]     "exeErrorDiag": "",
[2025-11-25 23:43:27]     "pilotErrorCode": 0,
[2025-11-25 23:43:27]     "pilotErrorDiag": "",
[2025-11-25 23:43:27]  *** Listing of results directory ***
[2025-11-25 23:43:27] total 620124
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc    576529 Nov 21 16:44 pilot3.tar.gz
[2025-11-25 23:43:27] -rwx------ 1 boinc boinc     36292 Nov 21 16:46 runpilot2-wrapper.sh
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc      5112 Nov 21 16:46 queuedata.json
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:43:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:05 run_atlas
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:05 job.xml
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc 293493793 Nov 25 20:05 EVNT.47523640._000003.pool.root.1
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc    589956 Nov 25 20:05 input.tar.gz
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:05 start_atlas.sh
[2025-11-25 23:43:27] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:05 shared
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:05 boinc_setup_complete
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc      6442 Nov 25 20:05 init_data.xml
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:05 boinc_lockfile
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc      2630 Nov 25 20:05 pandaJob.out
[2025-11-25 23:43:27] -rw------- 1 boinc boinc    991543 Nov 25 20:05 agis_schedconf.cvmfs.json
[2025-11-25 23:43:27] drwx------ 5 boinc boinc      4096 Nov 25 20:05 pilot3
[2025-11-25 23:43:27] -rw------- 1 boinc boinc 333146602 Nov 25 23:42 HITS.47523642._000067.pool.root.1
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc       530 Nov 25 23:42 boinc_task_state.xml
[2025-11-25 23:43:27] -rw------- 1 boinc boinc      1021 Nov 25 23:42 memory_monitor_summary.json
[2025-11-25 23:43:27] -rw------- 1 boinc boinc   1516240 Nov 25 23:42 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:43:27] -rw------- 1 boinc boinc    377742 Nov 25 23:42 log.47523642._000067.job.log.tgz.1
[2025-11-25 23:43:27] -rw------- 1 boinc boinc      7769 Nov 25 23:42 heartbeat.json
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc      8192 Nov 25 23:43 boinc_mmap_file
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc        28 Nov 25 23:43 wrapper_checkpoint.txt
[2025-11-25 23:43:27] -rw------- 1 boinc boinc        95 Nov 25 23:43 pilot_heartbeat.json
[2025-11-25 23:43:27] -rw------- 1 boinc boinc      4938 Nov 25 23:43 pilotlog.txt
[2025-11-25 23:43:27] -rw------- 1 boinc boinc   1851818 Nov 25 23:43 log.47523642._000067.job.log.1
[2025-11-25 23:43:27] -rw------- 1 boinc boinc       357 Nov 25 23:43 output.list
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc       620 Nov 25 23:43 runtime_log
[2025-11-25 23:43:27] -rw------- 1 boinc boinc   2252800 Nov 25 23:43 result.tar.gz
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc      8903 Nov 25 23:43 runtime_log.err
[2025-11-25 23:43:27] -rw------- 1 boinc boinc       662 Nov 25 23:43 H2XKDmmWig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXWJKDmkyeh4m.diag
[2025-11-25 23:43:27] -rw-r--r-- 1 boinc boinc     10539 Nov 25 23:43 stderr.txt
[2025-11-25 23:43:27] HITS file was successfully produced:
[2025-11-25 23:43:27] -rw------- 1 boinc boinc 333146602 Nov 25 23:42 shared/HITS.pool.root.1
[2025-11-25 23:43:27]  *** Contents of shared directory: ***
[2025-11-25 23:43:27] total 614760
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc 293493793 Nov 25 20:05 ATLAS.root_0
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc    589956 Nov 25 20:05 input.tar.gz
[2025-11-25 23:43:27] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:05 start_atlas.sh
[2025-11-25 23:43:27] -rw------- 1 boinc boinc 333146602 Nov 25 23:42 HITS.pool.root.1
[2025-11-25 23:43:27] -rw------- 1 boinc boinc   2252800 Nov 25 23:43 result.tar.gz
23:43:29 (1094879): run_atlas exited; CPU time 38361.521908
23:43:29 (1094879): called boinc_finish(0)

</stderr_txt>
]]>

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