Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:07:36 (932): wrapper (7.7.26015): starting
15:07:36 (932): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:07:36] Arguments: --nthreads 8
[2025-11-25 15:07:36] Threads: 8
[2025-11-25 15:07:36] Checking for CVMFS
[2025-11-25 15:07:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:07:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:07:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:07:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:07:38] 2.11.2.0 3140 283890 137100 153284 0 85 17751919 25165824 4632 130560 19 162419173 99.906 81199369 3103 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 15:07:38] CVMFS is ok
[2025-11-25 15:07:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:07:38] Checking for apptainer binary...
[2025-11-25 15:07:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:07:38] Running /usr/bin/apptainer --version
[2025-11-25 15:07:38] apptainer version 1.3.2-1.el7
[2025-11-25 15:07:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:07:45] cg-vwn243.simple-grid.lan
[2025-11-25 15:07:45] apptainer works
[2025-11-25 15:07:45] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:07:45] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:07:45] Starting ATLAS job with PandaID=6895326371
[2025-11-25 15:07:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:00:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:00:33] 2025-11-26 14:59:22,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:00:33] 2025-11-26 14:59:22,257 | INFO     | time since job start (89252s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:24,269 | INFO     | time since job start (89254s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:24,598 | INFO     | monitor loop #5984: job 0:6895326371 is in state 'finished'
[2025-11-26 16:00:33] 2025-11-26 14:59:24,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:00:33] 2025-11-26 14:59:26,276 | INFO     | time since job start (89256s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:27,103 | INFO     | monitor loop #5985: job 0:6895326371 is in state 'finished'
[2025-11-26 16:00:33] 2025-11-26 14:59:27,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:00:33] 2025-11-26 14:59:28,283 | INFO     | time since job start (89258s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:29,612 | INFO     | monitor loop #5986: job 0:6895326371 is in state 'finished'
[2025-11-26 16:00:33] 2025-11-26 14:59:29,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:00:33] 2025-11-26 14:59:30,294 | INFO     | time since job start (89260s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:32,124 | INFO     | monitor loop #5987: job 0:6895326371 is in state 'finished'
[2025-11-26 16:00:33] 2025-11-26 14:59:32,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:00:33] 2025-11-26 14:59:32,299 | INFO     | time since job start (89262s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,137 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:00:33] 2025-11-26 14:59:34,138 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 16:00:33] 2025-11-26 14:59:34,139 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895326371/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,140 | INFO     | extracted standard info from prmon json
[2025-11-26 16:00:33] 2025-11-26 14:59:34,140 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:00:33] 2025-11-26 14:59:34,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:00:33] 2025-11-26 14:59:34,191 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:00:33] 2025-11-26 14:59:34,193 | INFO     | sum of square deviations: 953166284901.1115
[2025-11-26 16:00:33] 2025-11-26 14:59:34,268 | INFO     | sum of deviations: 3890406524217.341
[2025-11-26 16:00:33] 2025-11-26 14:59:34,269 | INFO     | mean x: 1764124734.6898212
[2025-11-26 16:00:33] 2025-11-26 14:59:34,269 | INFO     | mean y: 2833311.5839064647
[2025-11-26 16:00:33] 2025-11-26 14:59:34,269 | INFO     | intersect: -7197549754.926364
[2025-11-26 16:00:33] 2025-11-26 14:59:34,271 | INFO     | chi2: 27.14544423567582
[2025-11-26 16:00:33] 2025-11-26 14:59:34,273 | INFO     | sum of square deviations: 943367307876.507
[2025-11-26 16:00:33] 2025-11-26 14:59:34,318 | INFO     | time since job start (89264s) is within the limit (172800.0s)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,348 | INFO     | sum of deviations: 4374563680888.1953
[2025-11-26 16:00:33] 2025-11-26 14:59:34,349 | INFO     | mean x: 1764124582.1939268
[2025-11-26 16:00:33] 2025-11-26 14:59:34,349 | INFO     | mean y: 2840845.8640441685
[2025-11-26 16:00:33] 2025-11-26 14:59:34,349 | INFO     | intersect: -8177721763.623645
[2025-11-26 16:00:33] 2025-11-26 14:59:34,351 | INFO     | chi2: 23.889165674530517
[2025-11-26 16:00:33] 2025-11-26 14:59:34,351 | INFO     | current chi2=23.889165674530517 (change=11.995672396717493 %)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,351 | INFO     | right removable region: 1448
[2025-11-26 16:00:33] 2025-11-26 14:59:34,353 | INFO     | sum of square deviations: 943366252576.5077
[2025-11-26 16:00:33] 2025-11-26 14:59:34,419 | INFO     | sum of deviations: 3263583766533.811
[2025-11-26 16:00:33] 2025-11-26 14:59:34,420 | INFO     | mean x: 1764124887.1939268
[2025-11-26 16:00:33] 2025-11-26 14:59:34,420 | INFO     | mean y: 2843065.954451346
[2025-11-26 16:00:33] 2025-11-26 14:59:34,420 | INFO     | intersect: -6100162344.998028
[2025-11-26 16:00:33] 2025-11-26 14:59:34,422 | INFO     | chi2: 22.06735580500794
[2025-11-26 16:00:33] 2025-11-26 14:59:34,422 | INFO     | current chi2=22.06735580500794 (change=18.70696381529104 %)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,422 | INFO     | left removable region: 10
[2025-11-26 16:00:33] 2025-11-26 14:59:34,424 | INFO     | sum of square deviations: 922044356450.2073
[2025-11-26 16:00:33] 2025-11-26 14:59:34,491 | INFO     | sum of deviations: 3300472963749.9766
[2025-11-26 16:00:33] 2025-11-26 14:59:34,492 | INFO     | mean x: 1764124856.70306
[2025-11-26 16:00:33] 2025-11-26 14:59:34,492 | INFO     | mean y: 2861289.5292072324
[2025-11-26 16:00:33] 2025-11-26 14:59:34,492 | INFO     | intersect: -6311852697.381006
[2025-11-26 16:00:33] 2025-11-26 14:59:34,494 | INFO     | chi2: 13.93540669528238
[2025-11-26 16:00:33] 2025-11-26 14:59:34,494 | INFO     | current memory leak: 3.58 B/s (using 1438 data points, chi2=13.94)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,495 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,495 | INFO     | ..............................
[2025-11-26 16:00:33] 2025-11-26 14:59:34,495 | INFO     | . Timing measurements:
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . get job = 0 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . initial setup = 8 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . payload setup = 148 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . stage-in = 0 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . payload execution = 88823 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . stage-out = 6 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | . log creation = 2 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,496 | INFO     | ..............................
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | 
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | job summary report
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | --------------------------------------------------
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | PanDA job id: 6895326371
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | task id: 47556137
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | errors: (none)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,607 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | pilot state: finished 
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | transexitcode: 0
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | exeerrorcode: 0
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | exeerrordiag: 
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | exitcode: 0
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | exitmsg: OK
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | cpuconsumptiontime: 333104 s
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | nevents: 1000
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | neventsw: 0
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | pid: 11263
[2025-11-26 16:00:33] 2025-11-26 14:59:34,608 | INFO     | pgrp: 11263
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | corecount: 8
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | event service: False
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | sizes: {0: 2284089, 1: 2284288, 12: 2284288, 23: 2284316, 33: 2284344, 44: 2284400, 55: 2284556, 66: 2284584, 76: 2284612, 87: 2284668, 95: 2284958, 98: 2285266, 8
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | --------------------------------------------------
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | 
[2025-11-26 16:00:33] 2025-11-26 14:59:34,609 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-26 16:00:33] 2025-11-26 14:59:34,983 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | job 6895326371 has completed (purged errors)
[2025-11-26 16:00:33] 2025-11-26 14:59:34,986 | INFO     | overall cleanup function is called
[2025-11-26 16:00:33] 2025-11-26 14:59:36,009 | INFO     | --- collectZombieJob: --- 10, [11263]
[2025-11-26 16:00:33] 2025-11-26 14:59:36,009 | INFO     | zombie collector waiting for pid 11263
[2025-11-26 16:00:33] 2025-11-26 14:59:36,009 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:00:33] 2025-11-26 14:59:36,009 | INFO     | collected zombie processes
[2025-11-26 16:00:33] 2025-11-26 14:59:36,009 | INFO     | will attempt to kill all subprocesses of pid=11263
[2025-11-26 16:00:33] 2025-11-26 14:59:36,140 | INFO     | process IDs to be killed: [11263] (in reverse order)
[2025-11-26 16:00:33] 2025-11-26 14:59:36,939 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:00:33] 2025-11-26 14:59:36,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:00:33] 2025-11-26 14:59:36,943 | INFO     | did not find any defunct processes belonging to 11263
[2025-11-26 16:00:33] 2025-11-26 14:59:36,946 | INFO     | did not find any defunct processes belonging to 11263
[2025-11-26 16:00:33] 2025-11-26 14:59:36,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:00:33] 2025-11-26 14:59:36,949 | INFO     | ready for new job
[2025-11-26 16:00:33] 2025-11-26 14:59:36,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:00:33] 2025-11-26 14:59:36,954 | INFO     | ***************************************
[2025-11-26 16:00:33] 2025-11-26 14:59:36,955 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:00:33] 2025-11-26 14:59:36,955 | INFO     | ***************************************
[2025-11-26 16:00:33] 2025-11-26 14:59:36,955 | INFO     | 
[2025-11-26 16:00:33] 2025-11-26 14:59:36,955 | INFO     | pilot is running in a VM
[2025-11-26 16:00:33] 2025-11-26 14:59:36,956 | INFO     | architecture information:
[2025-11-26 16:00:33] 2025-11-26 14:59:36,956 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:00:33] 2025-11-26 14:59:37,156 | INFO     | cat /etc/os-release:
[2025-11-26 16:00:33] NAME="CentOS Linux"
[2025-11-26 16:00:33] VERSION="7 (Core)"
[2025-11-26 16:00:33] ID="centos"
[2025-11-26 16:00:33] ID_LIKE="rhel fedora"
[2025-11-26 16:00:33] VERSION_ID="7"
[2025-11-26 16:00:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:00:33] ANSI_COLOR="0;31"
[2025-11-26 16:00:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:00:33] HOME_URL="https://www.centos.org/"
[2025-11-26 16:00:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:00:33] 
[2025-11-26 16:00:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:00:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:00:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:00:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:00:33] 
[2025-11-26 16:00:33] 2025-11-26 14:59:37,157 | INFO     | ***************************************
[2025-11-26 16:00:33] 2025-11-26 14:59:37,659 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-26 16:00:33] 2025-11-26 14:59:37,795 | INFO     | sufficient remaining disk space (495965962240 B)
[2025-11-26 16:00:33] 2025-11-26 14:59:37,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:00:33] 2025-11-26 14:59:37,796 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:00:33] 2025-11-26 14:59:37,796 | INFO     | update_server=False
[2025-11-26 16:00:33] 2025-11-26 14:59:37,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:00:33] 2025-11-26 14:59:37,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:00:33] 2025-11-26 14:59:38,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:00:33] 2025-11-26 14:59:38,141 | INFO     | aborting loop
[2025-11-26 16:00:33] 2025-11-26 14:59:38,214 | INFO     | all job control threads have been joined
[2025-11-26 16:00:33] 2025-11-26 14:59:38,235 | INFO     | all payload control threads have been joined
[2025-11-26 16:00:33] 2025-11-26 14:59:38,488 | INFO     | all data control threads have been joined
[2025-11-26 16:00:33] 2025-11-26 14:59:38,802 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:38,811 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:38,889 | INFO     | [job] validate thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,088 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,147 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,219 | INFO     | [job] control thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,241 | INFO     | [payload] control thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,411 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,494 | INFO     | [data] control thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:00:33] 2025-11-26 14:59:39,664 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:39,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:00:33] 2025-11-26 14:59:39,805 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:40,164 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:40,629 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:00:33] 2025-11-26 14:59:43,765 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:00:33] 2025-11-26 15:00:07,525 | INFO     | PID=4711 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 16:00:33] 2025-11-26 15:00:07,525 | INFO     | .. there are 9 such processes running
[2025-11-26 16:00:33] 2025-11-26 15:00:07,526 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:00:33] 2025-11-26 15:00:07,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:00:33] 2025-11-26 15:00:07,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:00:33] 2025-11-26 15:00:25,898 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:00:33] 2025-11-26 15:00:26,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514993358656)>', '<ExcThread(monitor, started 140514766440192)>']
[2025-11-26 16:00:33] 2025-11-26 15:00:26,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:00:33] 2025-11-26 15:00:26,643 | INFO     | [monitor] control thread has ended
[2025-11-26 16:00:33] 2025-11-26 15:00:31,187 | INFO     | all workflow threads have been joined
[2025-11-26 16:00:33] 2025-11-26 15:00:31,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:00:33] 2025-11-26 15:00:31,187 | INFO     | traces error code: 0
[2025-11-26 16:00:33] 2025-11-26 15:00:31,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:00:33] 2025-11-26 15:00:31,340 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:00:33] 2025-11-26 15:00:31,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:00:33] 2025-11-26 15:00:31,353 [wrapper] pilotpid: 4711
[2025-11-26 16:00:33] 2025-11-26 15:00:31,362 [wrapper] Pilot exit status: 0
[2025-11-26 16:00:33] 2025-11-26 15:00:31,409 [wrapper] pandaids: 6895326371
[2025-11-26 16:00:33] 2025-11-26 15:00:31,456 [wrapper] cleanup supervisor_pilot 12632 4712
[2025-11-26 16:00:33] 2025-11-26 15:00:31,551 [wrapper] Test setup, not cleaning
[2025-11-26 16:00:33] 2025-11-26 15:00:31,595 [wrapper] apfmon messages muted
[2025-11-26 16:00:33] 2025-11-26 15:00:31,680 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:00:33] 2025-11-26 15:00:31,765 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:00:33]  *** Error codes and diagnostics ***
[2025-11-26 16:00:33]     "exeErrorCode": 0,
[2025-11-26 16:00:33]     "exeErrorDiag": "",
[2025-11-26 16:00:33]     "pilotErrorCode": 0,
[2025-11-26 16:00:33]     "pilotErrorDiag": "",
[2025-11-26 16:00:33]  *** Listing of results directory ***
[2025-11-26 16:00:33] total 1330716
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc    576529 Nov 21 16:23 pilot3.tar.gz
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc      5112 Nov 21 16:31 queuedata.json
[2025-11-26 16:00:33] -rwx------. 1 boinc boinc     36292 Nov 21 16:32 runpilot2-wrapper.sh
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc       100 Nov 25 15:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:00:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 15:07 run_atlas
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc       105 Nov 25 15:07 job.xml
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc      6391 Nov 25 15:07 init_data.xml
[2025-11-26 16:00:33] -rw-r--r--. 2 boinc boinc 410344540 Nov 25 15:07 EVNT.47483658._000040.pool.root.1
[2025-11-26 16:00:33] -rw-r--r--. 2 boinc boinc     15847 Nov 25 15:07 start_atlas.sh
[2025-11-26 16:00:33] drwxrwx--x. 2 boinc boinc        68 Nov 25 15:07 shared
[2025-11-26 16:00:33] -rw-r--r--. 2 boinc boinc    590099 Nov 25 15:07 input.tar.gz
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc         0 Nov 25 15:07 boinc_lockfile
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc      2783 Nov 25 15:07 pandaJob.out
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc    991909 Nov 25 15:11 agis_schedconf.cvmfs.json
[2025-11-26 16:00:33] drwx------. 5 boinc boinc      4096 Nov 25 15:11 pilot3
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc       533 Nov 26 15:34 boinc_task_state.xml
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc 919566382 Nov 26 15:56 HITS.47556137._000399.pool.root.1
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc      1031 Nov 26 15:57 memory_monitor_summary.json
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc   1516240 Nov 26 15:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc   2533048 Nov 26 15:58 log.47556137._000399.job.log.tgz.1
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc      8625 Nov 26 15:59 heartbeat.json
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc        95 Nov 26 16:00 pilot_heartbeat.json
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc        29 Nov 26 16:00 wrapper_checkpoint.txt
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc      4883 Nov 26 16:00 pilotlog.txt
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc  11885998 Nov 26 16:00 log.47556137._000399.job.log.1
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc       353 Nov 26 16:00 output.list
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc       620 Nov 26 16:00 runtime_log
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc  14438400 Nov 26 16:00 result.tar.gz
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc      8192 Nov 26 16:00 boinc_mmap_file
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc      8817 Nov 26 16:00 runtime_log.err
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc       662 Nov 26 16:00 6WiKDm1Iig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxVJKDm3Frhtn.diag
[2025-11-26 16:00:33] -rw-r--r--. 1 boinc boinc     21434 Nov 26 16:00 stderr.txt
[2025-11-26 16:00:33] HITS file was successfully produced:
[2025-11-26 16:00:33] -rw-------. 1 boinc boinc 919566382 Nov 26 15:56 shared/HITS.pool.root.1
[2025-11-26 16:00:33]  *** Contents of shared directory: ***
[2025-11-26 16:00:34] total 1313440
[2025-11-26 16:00:34] -rw-r--r--. 2 boinc boinc 410344540 Nov 25 15:07 ATLAS.root_0
[2025-11-26 16:00:34] -rw-r--r--. 2 boinc boinc     15847 Nov 25 15:07 start_atlas.sh
[2025-11-26 16:00:34] -rw-r--r--. 2 boinc boinc    590099 Nov 25 15:07 input.tar.gz
[2025-11-26 16:00:34] -rw-------. 1 boinc boinc 919566382 Nov 26 15:56 HITS.pool.root.1
[2025-11-26 16:00:34] -rw-------. 1 boinc boinc  14438400 Nov 26 16:00 result.tar.gz
16:00:35 (932): run_atlas exited; CPU time 333719.005508
16:00:35 (932): called boinc_finish(0)

</stderr_txt>
]]>

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