Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:18:01 (2065244): wrapper (7.7.26015): starting
01:18:01 (2065244): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 01:18:01] Arguments: --nthreads 3
[2025-11-23 01:18:01] Threads: 3
[2025-11-23 01:18:01] Checking for CVMFS
[2025-11-23 01:18:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:18:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:18:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:18:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:18:01] 2.9.2.0 1731473 73 59688 153191 3 88 34769057 36864001 0 130560 0 1001668 100.000 5181 12605 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 01:18:01] CVMFS is ok
[2025-11-23 01:18:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 01:18:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 01:18:01] Further information can be found at the LHC@home message board.
[2025-11-23 01:18:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:18:01] Checking for apptainer binary...
[2025-11-23 01:18:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:18:01] Running /usr/bin/apptainer --version
[2025-11-23 01:18:01] apptainer version 1.4.1-1.1
[2025-11-23 01:18:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:18:02] thA335
[2025-11-23 01:18:02] apptainer works
[2025-11-23 01:18:02] Set ATHENA_PROC_NUMBER=3
[2025-11-23 01:18:02] Set ATHENA_CORE_NUMBER=3
[2025-11-23 01:18:02] Starting ATLAS job with PandaID=6895333985
[2025-11-23 01:18:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:22:21]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | INFO     | sufficient remaining disk space (827267743744 B)
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | INFO     | update_server=False
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:22:21] 2025-11-23 00:21:28,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:22:21] 2025-11-23 00:21:28,756 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 01:22:21] 2025-11-23 00:21:28,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:22:21] 2025-11-23 00:21:28,756 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:22:21] 2025-11-23 00:21:28,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:22:21] 2025-11-23 00:21:28,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:22:21] 2025-11-23 00:21:28,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:22:21] 2025-11-23 00:21:28,858 | INFO     | aborting loop
[2025-11-23 01:22:21] 2025-11-23 00:21:29,374 | INFO     | all payload control threads have been joined
[2025-11-23 01:22:21] 2025-11-23 00:21:29,455 | INFO     | all data control threads have been joined
[2025-11-23 01:22:21] 2025-11-23 00:21:29,737 | INFO     | all job control threads have been joined
[2025-11-23 01:22:21] 2025-11-23 00:21:29,761 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:29,762 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:29,863 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:29,874 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,228 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,369 | INFO     | [job] validate thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,379 | INFO     | [payload] control thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,452 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,460 | INFO     | [data] control thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,492 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,658 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,741 | INFO     | [job] control thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,762 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:30,983 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:21:32,760 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:22:21] 2025-11-23 00:22:15,111 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:22:21] 2025-11-23 00:22:16,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159701251904)>', '<ExcThread(monitor, started 140158900872960)>']
[2025-11-23 01:22:21] 2025-11-23 00:22:17,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:22:21] 2025-11-23 00:22:17,010 | INFO     | [monitor] control thread has ended
[2025-11-23 01:22:21] 2025-11-23 00:22:21,143 | INFO     | all workflow threads have been joined
[2025-11-23 01:22:21] 2025-11-23 00:22:21,143 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:22:21] 2025-11-23 00:22:21,144 | INFO     | traces error code: 0
[2025-11-23 01:22:21] 2025-11-23 00:22:21,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:22:21] 2025-11-23 00:22:21,190 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:22:21] 2025-11-23 00:22:21,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:22:21] 2025-11-23 00:22:21,197 [wrapper] pilotpid: 2068983
[2025-11-23 01:22:21] 2025-11-23 00:22:21,200 [wrapper] Pilot exit status: 0
[2025-11-23 01:22:21] 2025-11-23 00:22:21,208 [wrapper] pandaids: 6895333985
[2025-11-23 01:22:21] 2025-11-23 00:22:21,224 [wrapper] cleanup supervisor_pilot 2068989 2068984
[2025-11-23 01:22:21] 2025-11-23 00:22:21,227 [wrapper] Test setup, not cleaning
[2025-11-23 01:22:21] 2025-11-23 00:22:21,230 [wrapper] apfmon messages muted
[2025-11-23 01:22:21] 2025-11-23 00:22:21,233 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:22:21] 2025-11-23 00:22:21,235 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:22:21]  *** Error codes and diagnostics ***
[2025-11-23 01:22:21]     "exeErrorCode": 65,
[2025-11-23 01:22:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 01:22:21]     "pilotErrorCode": 1305,
[2025-11-23 01:22:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 01:22:21]  *** Listing of results directory ***
[2025-11-23 01:22:21] total 404016
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:10 pilot3.tar.gz
[2025-11-23 01:22:21] -rwx------ 1 boinc boinc     36292 Nov 22 03:12 runpilot2-wrapper.sh
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      5112 Nov 22 03:12 queuedata.json
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc       100 Nov 23 01:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:22:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 01:18 run_atlas
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc       105 Nov 23 01:18 job.xml
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc 409523283 Nov 23 01:18 EVNT.47483658._000217.pool.root.1
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc    590092 Nov 23 01:18 input.tar.gz
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc     15847 Nov 23 01:18 start_atlas.sh
[2025-11-23 01:22:21] drwxrwx--x 2 boinc boinc      4096 Nov 23 01:18 shared
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc         0 Nov 23 01:18 boinc_setup_complete
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      6194 Nov 23 01:18 init_data.xml
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc         0 Nov 23 01:18 boinc_lockfile
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      2785 Nov 23 01:18 pandaJob.out
[2025-11-23 01:22:21] -rw------- 1 boinc boinc    989784 Nov 23 01:18 agis_schedconf.cvmfs.json
[2025-11-23 01:22:21] -rw------- 1 boinc boinc   1526164 Nov 23 01:18 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:22:21] drwx------ 5 boinc boinc      4096 Nov 23 01:18 pilot3
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc       523 Nov 23 01:19 boinc_task_state.xml
[2025-11-23 01:22:21] -rw------- 1 boinc boinc       957 Nov 23 01:19 memory_monitor_summary.json
[2025-11-23 01:22:21] -rw------- 1 boinc boinc     55707 Nov 23 01:19 log.47556137._002133.job.log.tgz.1
[2025-11-23 01:22:21] -rw------- 1 boinc boinc        95 Nov 23 01:21 pilot_heartbeat.json
[2025-11-23 01:22:21] -rw------- 1 boinc boinc      8400 Nov 23 01:21 heartbeat.json
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      8192 Nov 23 01:22 boinc_mmap_file
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc        23 Nov 23 01:22 wrapper_checkpoint.txt
[2025-11-23 01:22:21] -rw------- 1 boinc boinc      4556 Nov 23 01:22 pilotlog.txt
[2025-11-23 01:22:21] -rw------- 1 boinc boinc     93075 Nov 23 01:22 log.47556137._002133.job.log.1
[2025-11-23 01:22:21] -rw------- 1 boinc boinc       186 Nov 23 01:22 output.list
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc       620 Nov 23 01:22 runtime_log
[2025-11-23 01:22:21] -rw------- 1 boinc boinc    163840 Nov 23 01:22 result.tar.gz
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      8744 Nov 23 01:22 runtime_log.err
[2025-11-23 01:22:21] -rw------- 1 boinc boinc       649 Nov 23 01:22 OKbKDmAIsg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8rJKDmUUMYbn.diag
[2025-11-23 01:22:21] -rw-r--r-- 1 boinc boinc      8048 Nov 23 01:22 stderr.txt
[2025-11-23 01:22:21] No HITS result produced
[2025-11-23 01:22:21]  *** Contents of shared directory: ***
[2025-11-23 01:22:21] total 400684
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc 409523283 Nov 23 01:18 ATLAS.root_0
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc    590092 Nov 23 01:18 input.tar.gz
[2025-11-23 01:22:21] -rw-r--r-- 2 boinc boinc     15847 Nov 23 01:18 start_atlas.sh
[2025-11-23 01:22:21] -rw------- 1 boinc boinc    163840 Nov 23 01:22 result.tar.gz
01:22:22 (2065244): run_atlas exited; CPU time 31.968603
01:22:22 (2065244): called boinc_finish(0)

</stderr_txt>
]]>

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