Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:48:18 (20787): wrapper (7.7.26015): starting
08:48:18 (20787): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 08:48:18] Arguments: --nthreads 4
[2025-11-27 08:48:18] Threads: 4
[2025-11-27 08:48:18] Checking for CVMFS
[2025-11-27 08:48:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:48:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:48:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:48:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:48:19] 2.9.2.0 3152 13 49072 153353 2 51 20965396 36864000 756 130560 0 53997 99.965 4120 24819 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 08:48:19] CVMFS is ok
[2025-11-27 08:48:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:48:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:48:19] Further information can be found at the LHC@home message board.
[2025-11-27 08:48:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:48:19] Checking for apptainer binary...
[2025-11-27 08:48:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:48:19] Running /usr/bin/apptainer --version
[2025-11-27 08:48:19] apptainer version 1.4.1-1.1
[2025-11-27 08:48:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:48:19] magicA250
[2025-11-27 08:48:19] apptainer works
[2025-11-27 08:48:19] Set ATHENA_PROC_NUMBER=4
[2025-11-27 08:48:19] Set ATHENA_CORE_NUMBER=4
[2025-11-27 08:48:19] Starting ATLAS job with PandaID=6895334059
[2025-11-27 08:48:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:01:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:01:29] 2025-11-27 15:00:57,970 | INFO     | aborting loop
[2025-11-27 16:01:29] 2025-11-27 15:00:57,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:01:29] 2025-11-27 15:00:58,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:01:29] 2025-11-27 15:00:58,720 | INFO     | all data control threads have been joined
[2025-11-27 16:01:29] 2025-11-27 15:00:58,781 | INFO     | all payload control threads have been joined
[2025-11-27 16:01:29] 2025-11-27 15:00:58,973 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:58,975 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:58,976 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:58,981 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,037 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,362 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,366 | INFO     | all job control threads have been joined
[2025-11-27 16:01:29] 2025-11-27 15:00:59,396 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,590 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,726 | INFO     | [data] control thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,787 | INFO     | [payload] control thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,954 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:00:59,976 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:01:00,372 | INFO     | [job] control thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:01:00,430 | INFO     | [job] validate thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:01:02,121 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:01:29] 2025-11-27 15:01:03,898 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:01:29] 2025-11-27 15:01:04,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955075565376)>', '<ExcThread(monitor, started 139954420164352)>']
[2025-11-27 16:01:29] 2025-11-27 15:01:09,924 | INFO     | all workflow threads have been joined
[2025-11-27 16:01:29] 2025-11-27 15:01:09,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:01:29] 2025-11-27 15:01:09,924 | INFO     | traces error code: 0
[2025-11-27 16:01:29] 2025-11-27 15:01:09,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | INFO     | PID=24825 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:01:29] 2025-11-27 15:01:28,885 | INFO     | [monitor] control thread has ended
[2025-11-27 16:01:29] 2025-11-27 15:01:28,960 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:01:29] 2025-11-27 15:01:28,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:01:29] 2025-11-27 15:01:28,968 [wrapper] pilotpid: 24825
[2025-11-27 16:01:29] 2025-11-27 15:01:28,972 [wrapper] Pilot exit status: 0
[2025-11-27 16:01:29] 2025-11-27 15:01:28,984 [wrapper] pandaids: 6895334059
[2025-11-27 16:01:29] 2025-11-27 15:01:29,005 [wrapper] cleanup supervisor_pilot   79373 24826
[2025-11-27 16:01:29] 2025-11-27 15:01:29,009 [wrapper] Test setup, not cleaning
[2025-11-27 16:01:29] 2025-11-27 15:01:29,012 [wrapper] apfmon messages muted
[2025-11-27 16:01:29] 2025-11-27 15:01:29,016 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:01:29] 2025-11-27 15:01:29,020 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:01:29]  *** Error codes and diagnostics ***
[2025-11-27 16:01:29]     "exeErrorCode": 0,
[2025-11-27 16:01:29]     "exeErrorDiag": "",
[2025-11-27 16:01:29]     "pilotErrorCode": 0,
[2025-11-27 16:01:29]     "pilotErrorDiag": "",
[2025-11-27 16:01:29]  *** Listing of results directory ***
[2025-11-27 16:01:29] total 1318060
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc    576529 Nov 22 03:10 pilot3.tar.gz
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      5112 Nov 22 03:29 queuedata.json
[2025-11-27 16:01:29] -rwx------ 1 boinc boinc     36292 Nov 22 03:30 runpilot2-wrapper.sh
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:01:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:48 run_atlas
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:48 job.xml
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc 410861383 Nov 27 08:48 EVNT.47483658._000222.pool.root.1
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc    590101 Nov 27 08:48 input.tar.gz
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:48 start_atlas.sh
[2025-11-27 16:01:29] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:48 shared
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:48 boinc_setup_complete
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      6378 Nov 27 08:48 init_data.xml
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:48 boinc_lockfile
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      2785 Nov 27 08:48 pandaJob.out
[2025-11-27 16:01:29] -rw------- 1 boinc boinc    991570 Nov 27 08:48 agis_schedconf.cvmfs.json
[2025-11-27 16:01:29] drwx------ 5 boinc boinc      4096 Nov 27 08:48 pilot3
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc       532 Nov 27 15:55 boinc_task_state.xml
[2025-11-27 16:01:29] -rw------- 1 boinc boinc 925105178 Nov 27 16:00 HITS.47556137._002189.pool.root.1
[2025-11-27 16:01:29] -rw------- 1 boinc boinc        95 Nov 27 16:00 pilot_heartbeat.json
[2025-11-27 16:01:29] -rw------- 1 boinc boinc      1030 Nov 27 16:00 memory_monitor_summary.json
[2025-11-27 16:01:29] -rw------- 1 boinc boinc   1516240 Nov 27 16:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:01:29] -rw------- 1 boinc boinc   1276749 Nov 27 16:00 log.47556137._002189.job.log.tgz.1
[2025-11-27 16:01:29] -rw------- 1 boinc boinc      8593 Nov 27 16:00 heartbeat.json
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:01 boinc_mmap_file
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc        29 Nov 27 16:01 wrapper_checkpoint.txt
[2025-11-27 16:01:29] -rw------- 1 boinc boinc       745 Nov 27 16:01 pilotlog.txt
[2025-11-27 16:01:29] -rw------- 1 boinc boinc   3641338 Nov 27 16:01 log.47556137._002189.job.log.1
[2025-11-27 16:01:29] -rw------- 1 boinc boinc       353 Nov 27 16:01 output.list
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:01 runtime_log
[2025-11-27 16:01:29] -rw------- 1 boinc boinc   4935680 Nov 27 16:01 result.tar.gz
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      8913 Nov 27 16:01 runtime_log.err
[2025-11-27 16:01:29] -rw------- 1 boinc boinc       669 Nov 27 16:01 aoIMDm7Ysg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbsJKDm2nfwPo.diag
[2025-11-27 16:01:29] -rw-r--r-- 1 boinc boinc      6928 Nov 27 16:01 stderr.txt
[2025-11-27 16:01:29] HITS file was successfully produced:
[2025-11-27 16:01:29] -rw------- 1 boinc boinc 925105178 Nov 27 16:00 shared/HITS.pool.root.1
[2025-11-27 16:01:29]  *** Contents of shared directory: ***
[2025-11-27 16:01:29] total 1310080
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc 410861383 Nov 27 08:48 ATLAS.root_0
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc    590101 Nov 27 08:48 input.tar.gz
[2025-11-27 16:01:29] -rw-r--r-- 2 boinc boinc     15847 Nov 27 08:48 start_atlas.sh
[2025-11-27 16:01:29] -rw------- 1 boinc boinc 925105178 Nov 27 16:00 HITS.pool.root.1
[2025-11-27 16:01:29] -rw------- 1 boinc boinc   4935680 Nov 27 16:01 result.tar.gz
16:01:30 (20787): run_atlas exited; CPU time 101627.729916
16:01:30 (20787): called boinc_finish(0)

</stderr_txt>
]]>

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