Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:35:15 (1968427): wrapper (7.7.26015): starting
19:35:15 (1968427): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:35:15] Arguments: --nthreads 8
[2025-11-22 19:35:15] Threads: 8
[2025-11-22 19:35:15] Checking for CVMFS
[2025-11-22 19:35:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:35:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:35:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:35:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:35:18] 2.13.3.0 11250 25017 344276 153191 1 483 32511342 32935937 13832 16776704 0 85763086 99.498 108589989 38952 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 19:35:18] CVMFS is ok
[2025-11-22 19:35:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:35:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:35:18] Further information can be found at the LHC@home message board.
[2025-11-22 19:35:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:35:18] Checking for apptainer binary...
[2025-11-22 19:35:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:35:18] Running /usr/bin/apptainer --version
[2025-11-22 19:35:18] apptainer version 1.4.4-1.el9
[2025-11-22 19:35:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:35:19] c6-2-29-1.aglt2.org
[2025-11-22 19:35:19] apptainer works
[2025-11-22 19:35:19] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:35:19] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:35:19] Starting ATLAS job with PandaID=6895325361
[2025-11-22 19:35:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:32:46]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:32:46] 2025-11-24 16:31:32,793 | INFO     | time since job start (143717s) is within the limit (172800.0s)
[2025-11-24 11:32:46] 2025-11-24 16:31:33,946 | INFO     | monitor loop #8537: job 0:6895325361 is in state 'finished'
[2025-11-24 11:32:46] 2025-11-24 16:31:33,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:32:46] 2025-11-24 16:31:34,715 | INFO     | PID=1980946 has CPU usage=15.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 11:32:46] 2025-11-24 16:31:34,715 | INFO     | .. there are 17 such processes running
[2025-11-24 11:32:46] 2025-11-24 16:31:35,717 | INFO     | time since job start (143720s) is within the limit (172800.0s)
[2025-11-24 11:32:46] 2025-11-24 16:31:36,453 | INFO     | monitor loop #8538: job 0:6895325361 is in state 'finished'
[2025-11-24 11:32:46] 2025-11-24 16:31:36,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:32:46] 2025-11-24 16:31:37,741 | INFO     | time since job start (143722s) is within the limit (172800.0s)
[2025-11-24 11:32:46] 2025-11-24 16:31:38,971 | INFO     | monitor loop #8539: job 0:6895325361 is in state 'finished'
[2025-11-24 11:32:46] 2025-11-24 16:31:38,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:32:46] 2025-11-24 16:31:39,761 | INFO     | time since job start (143724s) is within the limit (172800.0s)
[2025-11-24 11:32:46] 2025-11-24 16:31:41,481 | INFO     | monitor loop #8540: job 0:6895325361 is in state 'finished'
[2025-11-24 11:32:46] 2025-11-24 16:31:41,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:32:46] 2025-11-24 16:31:41,769 | INFO     | time since job start (143726s) is within the limit (172800.0s)
[2025-11-24 11:32:46] 2025-11-24 16:31:42,413 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 11:32:46] 2025-11-24 16:31:42,416 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2787.406178571429
[2025-11-24 11:32:46] 2025-11-24 16:31:42,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895325361/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 11:32:46] 2025-11-24 16:31:42,427 | INFO     | extracted standard info from prmon json
[2025-11-24 11:32:46] 2025-11-24 16:31:42,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:32:46] 2025-11-24 16:31:42,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:32:46] 2025-11-24 16:31:42,534 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:32:46] 2025-11-24 16:31:42,537 | INFO     | sum of square deviations: 4044906653807.515
[2025-11-24 11:32:46] 2025-11-24 16:31:42,813 | INFO     | sum of deviations: 14137061013673.592
[2025-11-24 11:32:46] 2025-11-24 16:31:42,813 | INFO     | mean x: 1763930066.8772302
[2025-11-24 11:32:46] 2025-11-24 16:31:42,813 | INFO     | mean y: 2935492.43797791
[2025-11-24 11:32:46] 2025-11-24 16:31:42,813 | INFO     | intersect: -6162049045.789492
[2025-11-24 11:32:46] 2025-11-24 16:31:42,816 | INFO     | chi2: 18.539716248489754
[2025-11-24 11:32:46] 2025-11-24 16:31:42,818 | INFO     | sum of square deviations: 4019191176310.147
[2025-11-24 11:32:46] 2025-11-24 16:31:42,992 | INFO     | sum of deviations: 14935507510969.342
[2025-11-24 11:32:46] 2025-11-24 16:31:42,993 | INFO     | mean x: 1763929914.388676
[2025-11-24 11:32:46] 2025-11-24 16:31:42,993 | INFO     | mean y: 2940227.6513409964
[2025-11-24 11:32:46] 2025-11-24 16:31:42,993 | INFO     | intersect: -6551908081.246969
[2025-11-24 11:32:46] 2025-11-24 16:31:42,999 | INFO     | chi2: 15.50060405688277
[2025-11-24 11:32:46] 2025-11-24 16:31:42,999 | INFO     | current chi2=15.50060405688277 (change=16.392441776742672 %)
[2025-11-24 11:32:46] 2025-11-24 16:31:42,999 | INFO     | right removable region: 2348
[2025-11-24 11:32:46] 2025-11-24 16:31:43,006 | INFO     | sum of square deviations: 4019183598289.9155
[2025-11-24 11:32:46] 2025-11-24 16:31:43,189 | INFO     | sum of deviations: 13152622831600.553
[2025-11-24 11:32:46] 2025-11-24 16:31:43,189 | INFO     | mean x: 1763930219.3882504
[2025-11-24 11:32:46] 2025-11-24 16:31:43,189 | INFO     | mean y: 2941328.8250319283
[2025-11-24 11:32:46] 2025-11-24 16:31:43,189 | INFO     | intersect: -5769452071.3538885
[2025-11-24 11:32:46] 2025-11-24 16:31:43,196 | INFO     | chi2: 14.123095591996986
[2025-11-24 11:32:46] 2025-11-24 16:31:43,196 | INFO     | current chi2=14.123095591996986 (change=23.822482487306385 %)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,196 | INFO     | left removable region: 10
[2025-11-24 11:32:46] 2025-11-24 16:31:43,199 | INFO     | sum of square deviations: 3962986372202.1934
[2025-11-24 11:32:46] 2025-11-24 16:31:43,389 | INFO     | sum of deviations: 13268165685444.984
[2025-11-24 11:32:46] 2025-11-24 16:31:43,390 | INFO     | mean x: 1763930188.912746
[2025-11-24 11:32:46] 2025-11-24 16:31:43,394 | INFO     | mean y: 2952380.980325064
[2025-11-24 11:32:46] 2025-11-24 16:31:43,394 | INFO     | intersect: -5902724753.873697
[2025-11-24 11:32:46] 2025-11-24 16:31:43,397 | INFO     | chi2: 6.920962875265028
[2025-11-24 11:32:46] 2025-11-24 16:31:43,397 | INFO     | current memory leak: 3.35 B/s (using 2338 data points, chi2=6.92)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | could have reported an average CPU frequency of 2814 MHz (81 samples)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | ..............................
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | . Timing measurements:
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | . get job = 0 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | . initial setup = 3 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | . payload setup = 33 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,404 | INFO     | . stage-in = 0 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,405 | INFO     | . payload execution = 143605 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,405 | INFO     | . stage-out = 8 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,405 | INFO     | . log creation = 2 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,405 | INFO     | ..............................
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | 
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | job summary report
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | --------------------------------------------------
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | PanDA job id: 6895325361
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | task id: 47556149
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | errors: (none)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | pilot state: finished 
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | transexitcode: 0
[2025-11-24 11:32:46] 2025-11-24 16:31:43,512 | INFO     | exeerrorcode: 0
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | exeerrordiag: 
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | exitcode: 0
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | exitmsg: OK
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | cpuconsumptiontime: 261253 s
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | nevents: 1000
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | neventsw: 0
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | pid: 1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | pgrp: 1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | corecount: 8
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | event service: False
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | sizes: {0: 2298575, 1: 2298659, 2: 2298830, 3: 2298858, 13: 2298886, 24: 2298942, 30: 2299360, 35: 2299388, 143642: 2390225, 143643: 2390224, 143651: 2400065, 1436
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | --------------------------------------------------
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | 
[2025-11-24 11:32:46] 2025-11-24 16:31:43,513 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 11:32:46] 2025-11-24 16:31:43,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,565 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,565 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,566 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,566 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,566 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,566 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | job 6895325361 has completed (purged errors)
[2025-11-24 11:32:46] 2025-11-24 16:31:43,568 | INFO     | overall cleanup function is called
[2025-11-24 11:32:46] 2025-11-24 16:31:44,606 | INFO     | --- collectZombieJob: --- 10, [1996471]
[2025-11-24 11:32:46] 2025-11-24 16:31:44,606 | INFO     | zombie collector waiting for pid 1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:44,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:32:46] 2025-11-24 16:31:44,606 | INFO     | collected zombie processes
[2025-11-24 11:32:46] 2025-11-24 16:31:44,606 | INFO     | will attempt to kill all subprocesses of pid=1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:45,326 | INFO     | process IDs to be killed: [1996471] (in reverse order)
[2025-11-24 11:32:46] 2025-11-24 16:31:45,492 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:32:46] 2025-11-24 16:31:45,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:32:46] 2025-11-24 16:31:45,536 | INFO     | did not find any defunct processes belonging to 1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:45,555 | INFO     | did not find any defunct processes belonging to 1996471
[2025-11-24 11:32:46] 2025-11-24 16:31:45,563 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:32:46] 2025-11-24 16:31:45,564 | INFO     | ready for new job
[2025-11-24 11:32:46] 2025-11-24 16:31:45,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:32:46] 2025-11-24 16:31:45,585 | INFO     | ***************************************
[2025-11-24 11:32:46] 2025-11-24 16:31:45,586 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:32:46] 2025-11-24 16:31:45,587 | INFO     | ***************************************
[2025-11-24 11:32:46] 2025-11-24 16:31:45,587 | INFO     | 
[2025-11-24 11:32:46] 2025-11-24 16:31:45,596 | INFO     | architecture information:
[2025-11-24 11:32:46] 2025-11-24 16:31:45,598 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:32:46] 2025-11-24 16:31:45,655 | INFO     | cat /etc/os-release:
[2025-11-24 11:32:46] NAME="CentOS Linux"
[2025-11-24 11:32:46] VERSION="7 (Core)"
[2025-11-24 11:32:46] ID="centos"
[2025-11-24 11:32:46] ID_LIKE="rhel fedora"
[2025-11-24 11:32:46] VERSION_ID="7"
[2025-11-24 11:32:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:32:46] ANSI_COLOR="0;31"
[2025-11-24 11:32:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:32:46] HOME_URL="https://www.centos.org/"
[2025-11-24 11:32:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:32:46] 
[2025-11-24 11:32:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:32:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:32:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:32:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:32:46] 
[2025-11-24 11:32:46] 2025-11-24 16:31:45,656 | INFO     | ***************************************
[2025-11-24 11:32:46] 2025-11-24 16:31:46,159 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 11:32:46] 2025-11-24 16:31:46,295 | INFO     | sufficient remaining disk space (72236400640 B)
[2025-11-24 11:32:46] 2025-11-24 16:31:46,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:32:46] 2025-11-24 16:31:46,295 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:32:46] 2025-11-24 16:31:46,296 | INFO     | update_server=False
[2025-11-24 11:32:46] 2025-11-24 16:31:46,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:32:46] 2025-11-24 16:31:46,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:32:46] 2025-11-24 16:31:46,569 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 11:32:46] 2025-11-24 16:31:46,569 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 11:32:46] 2025-11-24 16:31:46,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:32:46] 2025-11-24 16:31:46,570 | INFO     | will abort loop
[2025-11-24 11:32:46] 2025-11-24 16:31:46,630 | INFO     | all job control threads have been joined
[2025-11-24 11:32:46] 2025-11-24 16:31:47,300 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:47,331 | INFO     | all data control threads have been joined
[2025-11-24 11:32:46] 2025-11-24 16:31:47,575 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:47,629 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:47,636 | INFO     | [job] control thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:47,777 | INFO     | all payload control threads have been joined
[2025-11-24 11:32:46] 2025-11-24 16:31:47,879 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:47,895 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,251 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,259 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,269 | INFO     | [job] validate thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,304 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,337 | INFO     | [data] control thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:32:46] 2025-11-24 16:31:48,583 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:48,783 | INFO     | [payload] control thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:49,532 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:31:49,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:32:46] 2025-11-24 16:31:53,761 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:32:46] 2025-11-24 16:32:15,377 | INFO     | PID=1980946 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 11:32:46] 2025-11-24 16:32:15,379 | INFO     | .. there are 17 such processes running
[2025-11-24 11:32:46] 2025-11-24 16:32:15,379 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:32:46] 2025-11-24 16:32:15,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:32:46] 2025-11-24 16:32:15,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:32:46] 2025-11-24 16:32:39,296 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:32:46] 2025-11-24 16:32:40,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723609581376)>', '<ExcThread(monitor, started 139723129480960)>']
[2025-11-24 11:32:46] 2025-11-24 16:32:40,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:32:46] 2025-11-24 16:32:40,558 | INFO     | [monitor] control thread has ended
[2025-11-24 11:32:46] 2025-11-24 16:32:45,217 | INFO     | all workflow threads have been joined
[2025-11-24 11:32:46] 2025-11-24 16:32:45,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:32:46] 2025-11-24 16:32:45,219 | INFO     | traces error code: 0
[2025-11-24 11:32:46] 2025-11-24 16:32:45,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:32:46] 2025-11-24 16:32:45,744 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:32:46] 2025-11-24 16:32:45,749 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:32:46] 2025-11-24 16:32:45,753 [wrapper] pilotpid: 1980946
[2025-11-24 11:32:46] 2025-11-24 16:32:45,759 [wrapper] Pilot exit status: 0
[2025-11-24 11:32:46] 2025-11-24 16:32:45,789 [wrapper] pandaids: 6895325361
[2025-11-24 11:32:46] 2025-11-24 16:32:45,928 [wrapper] cleanup supervisor_pilot 3339937 1980947
[2025-11-24 11:32:46] 2025-11-24 16:32:45,932 [wrapper] Test setup, not cleaning
[2025-11-24 11:32:46] 2025-11-24 16:32:45,936 [wrapper] apfmon messages muted
[2025-11-24 11:32:46] 2025-11-24 16:32:45,962 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:32:46] 2025-11-24 16:32:45,970 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:32:46]  *** Error codes and diagnostics ***
[2025-11-24 11:32:46]     "exeErrorCode": 0,
[2025-11-24 11:32:46]     "exeErrorDiag": "",
[2025-11-24 11:32:46]     "pilotErrorCode": 0,
[2025-11-24 11:32:46]     "pilotErrorDiag": "",
[2025-11-24 11:32:46]  *** Listing of results directory ***
[2025-11-24 11:32:46] total 1327220
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 09:45 queuedata.json
[2025-11-24 11:32:46] -rwx------. 1 boincer umatlas     36292 Nov 21 09:47 runpilot2-wrapper.sh
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 09:47 pilot3.tar.gz
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas       100 Nov 22 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:32:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 19:35 run_atlas
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas       105 Nov 22 19:35 job.xml
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas 409728012 Nov 22 19:35 EVNT.47483658._001020.pool.root.1
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:35 start_atlas.sh
[2025-11-24 11:32:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 19:35 shared
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 19:35 input.tar.gz
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas         0 Nov 22 19:35 boinc_lockfile
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas      2783 Nov 22 19:35 pandaJob.out
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas        57 Nov 22 19:35 setup.sh.local
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas    989784 Nov 22 19:36 agis_schedconf.cvmfs.json
[2025-11-24 11:32:46] drwx------. 5 boincer umatlas      4096 Nov 22 19:36 pilot3
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas       534 Nov 24 11:18 boinc_task_state.xml
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas      6843 Nov 24 11:29 init_data.xml
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas 902889280 Nov 24 11:30 HITS.47556149._000069.pool.root.1
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas      1058 Nov 24 11:31 memory_monitor_summary.json
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas   1516227 Nov 24 11:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas   3138488 Nov 24 11:31 log.47556149._000069.job.log.tgz.1
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas        95 Nov 24 11:31 pilot_heartbeat.json
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas      8634 Nov 24 11:31 heartbeat.json
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas      5010 Nov 24 11:32 pilotlog.txt
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas        30 Nov 24 11:32 wrapper_checkpoint.txt
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 11:32 boinc_mmap_file
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas  18126704 Nov 24 11:32 log.47556149._000069.job.log.1
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas       353 Nov 24 11:32 output.list
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas       620 Nov 24 11:32 runtime_log
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas  21288960 Nov 24 11:32 result.tar.gz
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas       664 Nov 24 11:32 mZELDmtahg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7UJKDmvtU0Qm.diag
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 11:32 runtime_log.err
[2025-11-24 11:32:46] -rw-r--r--. 1 boincer umatlas     21876 Nov 24 11:32 stderr.txt
[2025-11-24 11:32:46] HITS file was successfully produced:
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas 902889280 Nov 24 11:30 shared/HITS.pool.root.1
[2025-11-24 11:32:46]  *** Contents of shared directory: ***
[2025-11-24 11:32:46] total 1303252
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas 409728012 Nov 22 19:35 ATLAS.root_0
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:35 start_atlas.sh
[2025-11-24 11:32:46] -rw-r--r--. 2 boincer umatlas    590100 Nov 22 19:35 input.tar.gz
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas 902889280 Nov 24 11:30 HITS.pool.root.1
[2025-11-24 11:32:46] -rw-------. 1 boincer umatlas  21288960 Nov 24 11:32 result.tar.gz
11:32:47 (1968427): run_atlas exited; CPU time 263778.153020
11:32:47 (1968427): called boinc_finish(0)

</stderr_txt>
]]>

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