Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
03:23:22 (616592): wrapper (7.7.26015): starting
03:23:22 (616592): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:23:22] Arguments: --nthreads 8
[2025-11-23 03:23:22] Threads: 8
[2025-11-23 03:23:22] Checking for CVMFS
[2025-11-23 03:23:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:23:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:23:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:23:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:23:23] 2.13.2.0 540105 584 44280 153195 1 80 2727904 4096001 0 130560 0 211914 99.982 18457 583 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-23 03:23:23] CVMFS is ok
[2025-11-23 03:23:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:23:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:23:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-23 03:23:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-23 03:23:23] Further information can be found at the LHC@home message board.
[2025-11-23 03:23:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:23:23] Checking for apptainer binary...
[2025-11-23 03:23:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:23:23] Running /usr/bin/apptainer --version
[2025-11-23 03:23:23] apptainer version 1.4.3
[2025-11-23 03:23:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:23:24] lab01ubuntu
[2025-11-23 03:23:24] apptainer works
[2025-11-23 03:23:24] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:23:24] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:23:24] Starting ATLAS job with PandaID=6895333856
[2025-11-23 03:23:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:20:00]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:20:00] 2025-11-23 13:19:11,883 | INFO     | time since job start (35717s) is within the limit (172800.0s)
[2025-11-23 13:20:00] 2025-11-23 13:19:13,551 | INFO     | monitor loop #2701: job 0:6895333856 is in state 'finished'
[2025-11-23 13:20:00] 2025-11-23 13:19:13,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:20:00] 2025-11-23 13:19:13,889 | INFO     | time since job start (35719s) is within the limit (172800.0s)
[2025-11-23 13:20:00] 2025-11-23 13:19:15,896 | INFO     | time since job start (35721s) is within the limit (172800.0s)
[2025-11-23 13:20:00] 2025-11-23 13:19:16,055 | INFO     | monitor loop #2702: job 0:6895333856 is in state 'finished'
[2025-11-23 13:20:00] 2025-11-23 13:19:16,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:20:00] 2025-11-23 13:19:17,901 | INFO     | time since job start (35723s) is within the limit (172800.0s)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,559 | INFO     | monitor loop #2703: job 0:6895333856 is in state 'finished'
[2025-11-23 13:20:00] 2025-11-23 13:19:18,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,868 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 13:20:00] 2025-11-23 13:19:18,869 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2025-11-23 13:20:00] 2025-11-23 13:19:18,873 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6895333856/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,875 | INFO     | extracted standard info from prmon json
[2025-11-23 13:20:00] 2025-11-23 13:19:18,875 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:20:00] 2025-11-23 13:19:18,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:20:00] 2025-11-23 13:19:18,895 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:20:00] 2025-11-23 13:19:18,897 | INFO     | sum of square deviations: 62079005820.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,914 | INFO     | sum of deviations: 606485553990.9998
[2025-11-23 13:20:00] 2025-11-23 13:19:18,915 | INFO     | mean x: 1763886108.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,915 | INFO     | mean y: 2862391.876923077
[2025-11-23 13:20:00] 2025-11-23 13:19:18,916 | INFO     | intersect: -17229556672.456097
[2025-11-23 13:20:00] 2025-11-23 13:19:18,917 | INFO     | chi2: 13.12397194358493
[2025-11-23 13:20:00] 2025-11-23 13:19:18,919 | INFO     | sum of square deviations: 60500799485.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,935 | INFO     | sum of deviations: 796856148549.9999
[2025-11-23 13:20:00] 2025-11-23 13:19:18,935 | INFO     | mean x: 1763885955.5
[2025-11-23 13:20:00] 2025-11-23 13:19:18,935 | INFO     | mean y: 2880782.8379310346
[2025-11-23 13:20:00] 2025-11-23 13:19:18,936 | INFO     | intersect: -23229264592.854973
[2025-11-23 13:20:00] 2025-11-23 13:19:18,937 | INFO     | chi2: 10.066579916937762
[2025-11-23 13:20:00] 2025-11-23 13:19:18,938 | INFO     | current chi2=10.066579916937762 (change=23.296240191534682 %)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,938 | INFO     | right removable region: 579
[2025-11-23 13:20:00] 2025-11-23 13:19:18,939 | INFO     | sum of square deviations: 60500799485.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,956 | INFO     | sum of deviations: 395861717105.9998
[2025-11-23 13:20:00] 2025-11-23 13:19:18,956 | INFO     | mean x: 1763886260.5
[2025-11-23 13:20:00] 2025-11-23 13:19:18,956 | INFO     | mean y: 2882733.8413793105
[2025-11-23 13:20:00] 2025-11-23 13:19:18,957 | INFO     | intersect: -11538370436.446556
[2025-11-23 13:20:00] 2025-11-23 13:19:18,958 | INFO     | chi2: 9.650520041846054
[2025-11-23 13:20:00] 2025-11-23 13:19:18,959 | INFO     | current chi2=9.650520041846054 (change=26.466468510218956 %)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,960 | INFO     | sum of square deviations: 58949570400.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,976 | INFO     | sum of deviations: 231106292261.99988
[2025-11-23 13:20:00] 2025-11-23 13:19:18,977 | INFO     | mean x: 1763886413.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,977 | INFO     | mean y: 2898927.8139130436
[2025-11-23 13:20:00] 2025-11-23 13:19:18,978 | INFO     | intersect: -6912253228.744442
[2025-11-23 13:20:00] 2025-11-23 13:19:18,979 | INFO     | chi2: 7.663618478640919
[2025-11-23 13:20:00] 2025-11-23 13:19:18,980 | INFO     | current chi2=7.663618478640919 (change=20.58854398094239 %)
[2025-11-23 13:20:00] 2025-11-23 13:19:18,980 | INFO     | left removable region: 20
[2025-11-23 13:20:00] 2025-11-23 13:19:18,981 | INFO     | sum of square deviations: 54164215560.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,996 | INFO     | sum of deviations: 306844668182.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,996 | INFO     | mean x: 1763886535.0
[2025-11-23 13:20:00] 2025-11-23 13:19:18,997 | INFO     | mean y: 2938074.7978533097
[2025-11-23 13:20:00] 2025-11-23 13:19:18,997 | INFO     | intersect: -9989622012.096031
[2025-11-23 13:20:00] 2025-11-23 13:19:18,998 | INFO     | chi2: 2.5474403053304213
[2025-11-23 13:20:00] 2025-11-23 13:19:18,999 | INFO     | current memory leak: 5.67 B/s (using 559 data points, chi2=2.55)
[2025-11-23 13:20:00] 2025-11-23 13:19:19,000 | INFO     | could have reported an average CPU frequency of 2893 MHz (23 samples)
[2025-11-23 13:20:00] 2025-11-23 13:19:19,001 | INFO     | ..............................
[2025-11-23 13:20:00] 2025-11-23 13:19:19,001 | INFO     | . Timing measurements:
[2025-11-23 13:20:00] 2025-11-23 13:19:19,001 | INFO     | . get job = 0 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,002 | INFO     | . initial setup = 5 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,002 | INFO     | . payload setup = 18 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,002 | INFO     | . stage-in = 0 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,002 | INFO     | . payload execution = 35644 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,003 | INFO     | . stage-out = 4 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,003 | INFO     | . log creation = 0 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,003 | INFO     | ..............................
[2025-11-23 13:20:00] 2025-11-23 13:19:19,155 | INFO     | 
[2025-11-23 13:20:00] 2025-11-23 13:19:19,156 | INFO     | job summary report
[2025-11-23 13:20:00] 2025-11-23 13:19:19,156 | INFO     | --------------------------------------------------
[2025-11-23 13:20:00] 2025-11-23 13:19:19,156 | INFO     | PanDA job id: 6895333856
[2025-11-23 13:20:00] 2025-11-23 13:19:19,157 | INFO     | task id: 47556137
[2025-11-23 13:20:00] 2025-11-23 13:19:19,157 | INFO     | errors: (none)
[2025-11-23 13:20:00] 2025-11-23 13:19:19,157 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:20:00] 2025-11-23 13:19:19,157 | INFO     | pilot state: finished 
[2025-11-23 13:20:00] 2025-11-23 13:19:19,158 | INFO     | transexitcode: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:19,158 | INFO     | exeerrorcode: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:19,158 | INFO     | exeerrordiag: 
[2025-11-23 13:20:00] 2025-11-23 13:19:19,158 | INFO     | exitcode: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:19,159 | INFO     | exitmsg: OK
[2025-11-23 13:20:00] 2025-11-23 13:19:19,159 | INFO     | cpuconsumptiontime: 272144 s
[2025-11-23 13:20:00] 2025-11-23 13:19:19,159 | INFO     | nevents: 1000
[2025-11-23 13:20:00] 2025-11-23 13:19:19,159 | INFO     | neventsw: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:19,160 | INFO     | pid: 626743
[2025-11-23 13:20:00] 2025-11-23 13:19:19,160 | INFO     | pgrp: 626743
[2025-11-23 13:20:00] 2025-11-23 13:19:19,160 | INFO     | corecount: 8
[2025-11-23 13:20:00] 2025-11-23 13:19:19,160 | INFO     | event service: False
[2025-11-23 13:20:00] 2025-11-23 13:19:19,161 | INFO     | sizes: {0: 2298642, 1: 2298841, 12: 2298841, 16: 2299131, 22: 2299159, 35667: 2340895, 35673: 2349959, 35691: 2350149}
[2025-11-23 13:20:00] 2025-11-23 13:19:19,161 | INFO     | --------------------------------------------------
[2025-11-23 13:20:00] 2025-11-23 13:19:19,161 | INFO     | 
[2025-11-23 13:20:00] 2025-11-23 13:19:19,162 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-23 13:20:00] 2025-11-23 13:19:19,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,211 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,211 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:20:00] 2025-11-23 13:19:19,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:20:00] 2025-11-23 13:19:19,217 | INFO     | job 6895333856 has completed (purged errors)
[2025-11-23 13:20:00] 2025-11-23 13:19:19,218 | INFO     | overall cleanup function is called
[2025-11-23 13:20:00] 2025-11-23 13:19:20,250 | INFO     | --- collectZombieJob: --- 10, [626743]
[2025-11-23 13:20:00] 2025-11-23 13:19:20,251 | INFO     | zombie collector waiting for pid 626743
[2025-11-23 13:20:00] 2025-11-23 13:19:20,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:20:00] 2025-11-23 13:19:20,252 | INFO     | collected zombie processes
[2025-11-23 13:20:00] 2025-11-23 13:19:20,252 | INFO     | will attempt to kill all subprocesses of pid=626743
[2025-11-23 13:20:00] 2025-11-23 13:19:20,400 | INFO     | process IDs to be killed: [626743] (in reverse order)
[2025-11-23 13:20:00] 2025-11-23 13:19:20,484 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:20:00] 2025-11-23 13:19:20,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:20:00] 2025-11-23 13:19:20,487 | INFO     | did not find any defunct processes belonging to 626743
[2025-11-23 13:20:00] 2025-11-23 13:19:20,489 | INFO     | did not find any defunct processes belonging to 626743
[2025-11-23 13:20:00] 2025-11-23 13:19:20,491 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:20:00] 2025-11-23 13:19:20,491 | INFO     | ready for new job
[2025-11-23 13:20:00] 2025-11-23 13:19:20,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | ***************************************
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | ***************************************
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | 
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | pilot is running in a VM
[2025-11-23 13:20:00] 2025-11-23 13:19:20,495 | INFO     | architecture information:
[2025-11-23 13:20:00] 2025-11-23 13:19:20,497 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:20:00] 2025-11-23 13:19:20,528 | INFO     | cat /etc/os-release:
[2025-11-23 13:20:00] NAME="CentOS Linux"
[2025-11-23 13:20:00] VERSION="7 (Core)"
[2025-11-23 13:20:00] ID="centos"
[2025-11-23 13:20:00] ID_LIKE="rhel fedora"
[2025-11-23 13:20:00] VERSION_ID="7"
[2025-11-23 13:20:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:20:00] ANSI_COLOR="0;31"
[2025-11-23 13:20:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:20:00] HOME_URL="https://www.centos.org/"
[2025-11-23 13:20:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:20:00] 
[2025-11-23 13:20:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:20:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:20:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:20:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:20:00] 
[2025-11-23 13:20:00] 2025-11-23 13:19:20,529 | INFO     | ***************************************
[2025-11-23 13:20:00] 2025-11-23 13:19:21,032 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-23 13:20:00] 2025-11-23 13:19:21,125 | INFO     | sufficient remaining disk space (15014559744 B)
[2025-11-23 13:20:00] 2025-11-23 13:19:21,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:20:00] 2025-11-23 13:19:21,127 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:20:00] 2025-11-23 13:19:21,127 | INFO     | update_server=False
[2025-11-23 13:20:00] 2025-11-23 13:19:21,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:20:00] 2025-11-23 13:19:21,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:20:00] 2025-11-23 13:19:21,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:20:00] 2025-11-23 13:19:21,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:20:00] 2025-11-23 13:19:21,483 | INFO     | all data control threads have been joined
[2025-11-23 13:20:00] 2025-11-23 13:19:21,701 | INFO     | all job control threads have been joined
[2025-11-23 13:20:00] 2025-11-23 13:19:22,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:20:00] 2025-11-23 13:19:22,069 | INFO     | aborting loop
[2025-11-23 13:20:00] 2025-11-23 13:19:22,133 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,135 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,391 | INFO     | all payload control threads have been joined
[2025-11-23 13:20:00] 2025-11-23 13:19:22,417 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,483 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,488 | INFO     | [data] control thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,618 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,706 | INFO     | [job] control thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,737 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,915 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:22,986 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:23,075 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:23,183 | INFO     | [job] validate thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:23,290 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:23,397 | INFO     | [payload] control thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:23,411 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:25,136 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:20:00] 2025-11-23 13:19:51,140 | INFO     | PID=620321 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 13:20:00] 2025-11-23 13:19:51,140 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:20:00] 2025-11-23 13:19:51,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:20:00] 2025-11-23 13:19:51,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:20:00] 2025-11-23 13:19:52,396 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:20:00] 2025-11-23 13:19:54,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128399027947328)>', '<ExcThread(monitor, started 128398290568960)>']
[2025-11-23 13:20:00] 2025-11-23 13:19:55,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:20:00] 2025-11-23 13:19:55,161 | INFO     | [monitor] control thread has ended
[2025-11-23 13:20:00] 2025-11-23 13:19:59,444 | INFO     | all workflow threads have been joined
[2025-11-23 13:20:00] 2025-11-23 13:19:59,445 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:20:00] 2025-11-23 13:19:59,457 | INFO     | traces error code: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:59,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:20:00] 2025-11-23 13:19:59,656 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:20:00] 2025-11-23 13:19:59,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:20:00] 2025-11-23 13:19:59,674 [wrapper] pilotpid: 620321
[2025-11-23 13:20:00] 2025-11-23 13:19:59,682 [wrapper] Pilot exit status: 0
[2025-11-23 13:20:00] 2025-11-23 13:19:59,712 [wrapper] pandaids: 6895333856
[2025-11-23 13:20:00] 2025-11-23 13:19:59,789 [wrapper] cleanup supervisor_pilot  690216 620322
[2025-11-23 13:20:00] 2025-11-23 13:19:59,798 [wrapper] Test setup, not cleaning
[2025-11-23 13:20:00] 2025-11-23 13:19:59,806 [wrapper] apfmon messages muted
[2025-11-23 13:20:00] 2025-11-23 13:19:59,815 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:20:00] 2025-11-23 13:19:59,824 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:20:00]  *** Error codes and diagnostics ***
[2025-11-23 13:20:00]     "exeErrorCode": 0,
[2025-11-23 13:20:00]     "exeErrorDiag": "",
[2025-11-23 13:20:00]     "pilotErrorCode": 0,
[2025-11-23 13:20:00]     "pilotErrorDiag": "",
[2025-11-23 13:20:00]  *** Listing of results directory ***
[2025-11-23 13:20:00] total 1318184
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc    576529 Nov 22 01:38 pilot3.tar.gz
[2025-11-23 13:20:00] -rwx------ 1 boinc boinc     36292 Nov 22 02:06 runpilot2-wrapper.sh
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc      5112 Nov 22 02:06 queuedata.json
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc       100 Nov 23 03:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:20:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 03:23 run_atlas
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc       105 Nov 23 03:23 job.xml
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc 410503442 Nov 23 03:23 EVNT.47483658._000214.pool.root.1
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc      6315 Nov 23 03:23 init_data.xml
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:23 start_atlas.sh
[2025-11-23 13:20:00] drwxrwx--x 2 boinc boinc      4096 Nov 23 03:23 shared
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc    590098 Nov 23 03:23 input.tar.gz
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc         0 Nov 23 03:23 boinc_lockfile
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc      2785 Nov 23 03:23 pandaJob.out
[2025-11-23 13:20:00] -rw------- 1 boinc boinc    989784 Nov 23 03:23 agis_schedconf.cvmfs.json
[2025-11-23 13:20:00] drwx------ 5 boinc boinc      4096 Nov 23 03:23 pilot3
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc       532 Nov 23 13:05 boinc_task_state.xml
[2025-11-23 13:20:00] -rw------- 1 boinc boinc 921543033 Nov 23 13:18 HITS.47556137._002105.pool.root.1
[2025-11-23 13:20:00] -rw------- 1 boinc boinc      1032 Nov 23 13:18 memory_monitor_summary.json
[2025-11-23 13:20:00] -rw------- 1 boinc boinc   1526164 Nov 23 13:18 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:20:00] -rw------- 1 boinc boinc   1860159 Nov 23 13:19 log.47556137._002105.job.log.tgz.1
[2025-11-23 13:20:00] -rw------- 1 boinc boinc        95 Nov 23 13:19 pilot_heartbeat.json
[2025-11-23 13:20:00] -rw------- 1 boinc boinc      8584 Nov 23 13:19 heartbeat.json
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc        29 Nov 23 13:19 wrapper_checkpoint.txt
[2025-11-23 13:20:00] -rw------- 1 boinc boinc      4816 Nov 23 13:19 pilotlog.txt
[2025-11-23 13:20:00] -rw------- 1 boinc boinc   5062801 Nov 23 13:19 log.47556137._002105.job.log.1
[2025-11-23 13:20:00] -rw------- 1 boinc boinc       353 Nov 23 13:19 output.list
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc       620 Nov 23 13:19 runtime_log
[2025-11-23 13:20:00] -rw------- 1 boinc boinc   6942720 Nov 23 13:19 result.tar.gz
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc      8904 Nov 23 13:19 runtime_log.err
[2025-11-23 13:20:00] -rw------- 1 boinc boinc       656 Nov 23 13:19 a6hLDm4Bsg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmurJKDmnUNzrm.diag
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc      8192 Nov 23 13:20 boinc_mmap_file
[2025-11-23 13:20:00] -rw-r--r-- 1 boinc boinc     21660 Nov 23 13:20 stderr.txt
[2025-11-23 13:20:00] HITS file was successfully produced:
[2025-11-23 13:20:00] -rw------- 1 boinc boinc 921543033 Nov 23 13:18 shared/HITS.pool.root.1
[2025-11-23 13:20:00]  *** Contents of shared directory: ***
[2025-11-23 13:20:00] total 1308216
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc 410503442 Nov 23 03:23 ATLAS.root_0
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc     15847 Nov 23 03:23 start_atlas.sh
[2025-11-23 13:20:00] -rw-r--r-- 2 boinc boinc    590098 Nov 23 03:23 input.tar.gz
[2025-11-23 13:20:00] -rw------- 1 boinc boinc 921543033 Nov 23 13:18 HITS.pool.root.1
[2025-11-23 13:20:00] -rw------- 1 boinc boinc   6942720 Nov 23 13:19 result.tar.gz
13:20:01 (616592): run_atlas exited; CPU time 271800.336478
13:20:01 (616592): called boinc_finish(0)

</stderr_txt>
]]>

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