Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:27:43 (1437495): wrapper (7.7.26015): starting
19:27:43 (1437495): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 19:27:43] Arguments: --nthreads 8
[2025-11-22 19:27:43] Threads: 8
[2025-11-22 19:27:43] Checking for CVMFS
[2025-11-22 19:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:27:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:27:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:27:45] 2.13.2.0 6384 29397 236012 153191 2 138 37565021 40960000 11359 16776704 0 28179085 99.770 16521277 35838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 19:27:45] CVMFS is ok
[2025-11-22 19:27:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:27:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:27:45] Further information can be found at the LHC@home message board.
[2025-11-22 19:27:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:27:45] Checking for apptainer binary...
[2025-11-22 19:27:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 19:27:45] Running /usr/bin/apptainer --version
[2025-11-22 19:27:45] apptainer version 1.4.4-1.el9
[2025-11-22 19:27:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:27:46] c-210-33-2.aglt2.org
[2025-11-22 19:27:46] apptainer works
[2025-11-22 19:27:46] Set ATHENA_PROC_NUMBER=8
[2025-11-22 19:27:46] Set ATHENA_CORE_NUMBER=8
[2025-11-22 19:27:46] Starting ATLAS job with PandaID=6895324418
[2025-11-22 19:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 08:00:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 08:00:54] 2025-11-23 13:00:07,867 | INFO     | time since job start (45112s) is within the limit (172800.0s)
[2025-11-23 08:00:54] 2025-11-23 13:00:08,467 | INFO     | monitor loop #3082: job 0:6895324418 is in state 'finished'
[2025-11-23 08:00:54] 2025-11-23 13:00:08,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:00:54] 2025-11-23 13:00:10,317 | INFO     | PID=1441189 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:00:54] 2025-11-23 13:00:10,317 | INFO     | .. there are 11 such processes running
[2025-11-23 08:00:54] 2025-11-23 13:00:10,998 | INFO     | monitor loop #3083: job 0:6895324418 is in state 'finished'
[2025-11-23 08:00:54] 2025-11-23 13:00:10,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:00:54] 2025-11-23 13:00:11,331 | INFO     | time since job start (45116s) is within the limit (172800.0s)
[2025-11-23 08:00:54] 2025-11-23 13:00:13,350 | INFO     | time since job start (45118s) is within the limit (172800.0s)
[2025-11-23 08:00:54] 2025-11-23 13:00:13,506 | INFO     | monitor loop #3084: job 0:6895324418 is in state 'finished'
[2025-11-23 08:00:54] 2025-11-23 13:00:13,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:00:54] 2025-11-23 13:00:15,390 | INFO     | time since job start (45120s) is within the limit (172800.0s)
[2025-11-23 08:00:54] 2025-11-23 13:00:16,014 | INFO     | monitor loop #3085: job 0:6895324418 is in state 'finished'
[2025-11-23 08:00:54] 2025-11-23 13:00:16,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:00:54] 2025-11-23 13:00:17,419 | INFO     | time since job start (45122s) is within the limit (172800.0s)
[2025-11-23 08:00:54] 2025-11-23 13:00:18,549 | INFO     | monitor loop #3086: job 0:6895324418 is in state 'finished'
[2025-11-23 08:00:54] 2025-11-23 13:00:18,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 08:00:54] 2025-11-23 13:00:18,930 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 08:00:54] 2025-11-23 13:00:18,939 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2913.539910714285
[2025-11-23 08:00:54] 2025-11-23 13:00:18,964 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895324418/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 08:00:54] 2025-11-23 13:00:18,965 | INFO     | extracted standard info from prmon json
[2025-11-23 08:00:54] 2025-11-23 13:00:18,965 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 08:00:54] 2025-11-23 13:00:18,965 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 08:00:54] 2025-11-23 13:00:18,994 | INFO     | fitting pss+swap vs Time
[2025-11-23 08:00:54] 2025-11-23 13:00:19,000 | INFO     | sum of square deviations: 124644793786.93385
[2025-11-23 08:00:54] 2025-11-23 13:00:19,023 | INFO     | sum of deviations: -76576338205.65762
[2025-11-23 08:00:54] 2025-11-23 13:00:19,023 | INFO     | mean x: 1763880248.5460706
[2025-11-23 08:00:54] 2025-11-23 13:00:19,023 | INFO     | mean y: 2885966.445799458
[2025-11-23 08:00:54] 2025-11-23 13:00:19,023 | INFO     | intersect: 1086537247.5240345
[2025-11-23 08:00:54] 2025-11-23 13:00:19,024 | INFO     | chi2: 19.873083779552854
[2025-11-23 08:00:54] 2025-11-23 13:00:19,030 | INFO     | sum of square deviations: 122128834722.02881
[2025-11-23 08:00:54] 2025-11-23 13:00:19,052 | INFO     | sum of deviations: 163419278429.08932
[2025-11-23 08:00:54] 2025-11-23 13:00:19,052 | INFO     | mean x: 1763880096.0518417
[2025-11-23 08:00:54] 2025-11-23 13:00:19,052 | INFO     | mean y: 2900508.1555252387
[2025-11-23 08:00:54] 2025-11-23 13:00:19,052 | INFO     | intersect: -2357328451.6007876
[2025-11-23 08:00:54] 2025-11-23 13:00:19,053 | INFO     | chi2: 16.573767854422957
[2025-11-23 08:00:54] 2025-11-23 13:00:19,053 | INFO     | current chi2=16.573767854422957 (change=16.6019323509546 %)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,053 | INFO     | right removable region: 732
[2025-11-23 08:00:54] 2025-11-23 13:00:19,054 | INFO     | sum of square deviations: 122128408818.92493
[2025-11-23 08:00:54] 2025-11-23 13:00:19,075 | INFO     | sum of deviations: -311900302790.19025
[2025-11-23 08:00:54] 2025-11-23 13:00:19,076 | INFO     | mean x: 1763880401.053206
[2025-11-23 08:00:54] 2025-11-23 13:00:19,076 | INFO     | mean y: 2900213.95361528
[2025-11-23 08:00:54] 2025-11-23 13:00:19,076 | INFO     | intersect: 4507624679.740036
[2025-11-23 08:00:54] 2025-11-23 13:00:19,077 | INFO     | chi2: 17.257301670538247
[2025-11-23 08:00:54] 2025-11-23 13:00:19,077 | INFO     | current chi2=17.257301670538247 (change=13.162436882120677 %)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,077 | INFO     | left removable region: 10
[2025-11-23 08:00:54] 2025-11-23 13:00:19,078 | INFO     | sum of square deviations: 116712697691.56943
[2025-11-23 08:00:54] 2025-11-23 13:00:19,096 | INFO     | sum of deviations: -63196359676.82854
[2025-11-23 08:00:54] 2025-11-23 13:00:19,097 | INFO     | mean x: 1763880370.563712
[2025-11-23 08:00:54] 2025-11-23 13:00:19,097 | INFO     | mean y: 2920012.51800554
[2025-11-23 08:00:54] 2025-11-23 13:00:19,097 | INFO     | intersect: 958007338.3171235
[2025-11-23 08:00:54] 2025-11-23 13:00:19,098 | INFO     | chi2: 13.317870859890292
[2025-11-23 08:00:54] 2025-11-23 13:00:19,098 | INFO     | current memory leak: -0.54 B/s (using 722 data points, chi2=13.32)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | could have reported an average CPU frequency of 2806 MHz (28 samples)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | ..............................
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . Timing measurements:
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . get job = 0 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . initial setup = 3 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . payload setup = 17 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . stage-in = 1 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . payload execution = 45016 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,099 | INFO     | . stage-out = 6 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,100 | INFO     | . log creation = 1 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,100 | INFO     | ..............................
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | 
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | job summary report
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | --------------------------------------------------
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | PanDA job id: 6895324418
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | task id: 47556137
[2025-11-23 08:00:54] 2025-11-23 13:00:19,332 | INFO     | errors: (none)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | pilot state: finished 
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | transexitcode: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | exeerrorcode: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | exeerrordiag: 
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | exitcode: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | exitmsg: OK
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | cpuconsumptiontime: 237053 s
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | nevents: 1000
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | neventsw: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:19,333 | INFO     | pid: 1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | pgrp: 1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | corecount: 8
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | event service: False
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | sizes: {0: 2298632, 1: 2298831, 12: 2298831, 16: 2299121, 22: 2299149, 45036: 2345502, 45043: 2354496, 45046: 2354552, 45085: 2354798}
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | --------------------------------------------------
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | 
[2025-11-23 08:00:54] 2025-11-23 13:00:19,334 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 08:00:54] 2025-11-23 13:00:19,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | job 6895324418 has completed (purged errors)
[2025-11-23 08:00:54] 2025-11-23 13:00:19,402 | INFO     | overall cleanup function is called
[2025-11-23 08:00:54] 2025-11-23 13:00:20,439 | INFO     | --- collectZombieJob: --- 10, [1447712]
[2025-11-23 08:00:54] 2025-11-23 13:00:20,439 | INFO     | zombie collector waiting for pid 1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:20,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 08:00:54] 2025-11-23 13:00:20,439 | INFO     | collected zombie processes
[2025-11-23 08:00:54] 2025-11-23 13:00:20,439 | INFO     | will attempt to kill all subprocesses of pid=1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:21,158 | INFO     | process IDs to be killed: [1447712] (in reverse order)
[2025-11-23 08:00:54] 2025-11-23 13:00:21,803 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 08:00:54] 2025-11-23 13:00:21,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 08:00:54] 2025-11-23 13:00:21,819 | INFO     | did not find any defunct processes belonging to 1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:21,838 | INFO     | did not find any defunct processes belonging to 1447712
[2025-11-23 08:00:54] 2025-11-23 13:00:21,843 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 08:00:54] 2025-11-23 13:00:21,843 | INFO     | ready for new job
[2025-11-23 08:00:54] 2025-11-23 13:00:21,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 08:00:54] 2025-11-23 13:00:21,852 | INFO     | ***************************************
[2025-11-23 08:00:54] 2025-11-23 13:00:21,852 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 08:00:54] 2025-11-23 13:00:21,852 | INFO     | ***************************************
[2025-11-23 08:00:54] 2025-11-23 13:00:21,852 | INFO     | 
[2025-11-23 08:00:54] 2025-11-23 13:00:21,859 | INFO     | architecture information:
[2025-11-23 08:00:54] 2025-11-23 13:00:21,860 | INFO     | executing command: cat /etc/os-release
[2025-11-23 08:00:54] 2025-11-23 13:00:21,896 | INFO     | cat /etc/os-release:
[2025-11-23 08:00:54] NAME="CentOS Linux"
[2025-11-23 08:00:54] VERSION="7 (Core)"
[2025-11-23 08:00:54] ID="centos"
[2025-11-23 08:00:54] ID_LIKE="rhel fedora"
[2025-11-23 08:00:54] VERSION_ID="7"
[2025-11-23 08:00:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 08:00:54] ANSI_COLOR="0;31"
[2025-11-23 08:00:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 08:00:54] HOME_URL="https://www.centos.org/"
[2025-11-23 08:00:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 08:00:54] 
[2025-11-23 08:00:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 08:00:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 08:00:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 08:00:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 08:00:54] 
[2025-11-23 08:00:54] 2025-11-23 13:00:21,897 | INFO     | ***************************************
[2025-11-23 08:00:54] 2025-11-23 13:00:22,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 08:00:54] 2025-11-23 13:00:22,459 | INFO     | sufficient remaining disk space (70148685824 B)
[2025-11-23 08:00:54] 2025-11-23 13:00:22,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 08:00:54] 2025-11-23 13:00:22,460 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 08:00:54] 2025-11-23 13:00:22,460 | INFO     | update_server=False
[2025-11-23 08:00:54] 2025-11-23 13:00:22,460 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 08:00:54] 2025-11-23 13:00:22,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:00:54] 2025-11-23 13:00:22,462 | INFO     | aborting loop
[2025-11-23 08:00:54] 2025-11-23 13:00:22,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 08:00:54] 2025-11-23 13:00:22,769 | INFO     | all payload control threads have been joined
[2025-11-23 08:00:54] 2025-11-23 13:00:22,939 | INFO     | all data control threads have been joined
[2025-11-23 08:00:54] 2025-11-23 13:00:23,466 | INFO     | [job] retrieve thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,470 | INFO     | [job] job monitor thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,543 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 08:00:54] 2025-11-23 13:00:23,726 | INFO     | [payload] validate_post thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,789 | INFO     | all job control threads have been joined
[2025-11-23 08:00:54] 2025-11-23 13:00:23,792 | INFO     | [payload] control thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,892 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:23,965 | INFO     | [data] control thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:24,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 08:00:54] 2025-11-23 13:00:24,526 | INFO     | [job] validate thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:24,562 | INFO     | [payload] failed_post thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:24,572 | INFO     | [data] copytool_in thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:24,795 | INFO     | [job] control thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:24,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:25,350 | INFO     | [job] queue monitor thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:25,737 | INFO     | [data] copytool_out thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:26,531 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 08:00:54] 2025-11-23 13:00:32,783 | INFO     | [monitor] cgroup control has ended
[2025-11-23 08:00:54] 2025-11-23 13:00:34,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654888204096)>', '<ExcThread(monitor, started 139654259001088)>']
[2025-11-23 08:00:54] 2025-11-23 13:00:39,906 | INFO     | all workflow threads have been joined
[2025-11-23 08:00:54] 2025-11-23 13:00:39,906 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 08:00:54] 2025-11-23 13:00:39,906 | INFO     | traces error code: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:39,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 08:00:54] 2025-11-23 13:00:52,566 | INFO     | PID=1441189 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 08:00:54] 2025-11-23 13:00:52,567 | INFO     | .. there are 11 such processes running
[2025-11-23 08:00:54] 2025-11-23 13:00:52,572 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 08:00:54] 2025-11-23 13:00:52,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 08:00:54] 2025-11-23 13:00:52,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 08:00:54] 2025-11-23 13:00:52,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 08:00:54] 2025-11-23 13:00:52,572 | INFO     | [monitor] control thread has ended
[2025-11-23 08:00:54] 2025-11-23 13:00:53,072 [wrapper] ==== pilot stdout END ====
[2025-11-23 08:00:54] 2025-11-23 13:00:53,089 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 08:00:54] 2025-11-23 13:00:53,106 [wrapper] pilotpid: 1441189
[2025-11-23 08:00:54] 2025-11-23 13:00:53,122 [wrapper] Pilot exit status: 0
[2025-11-23 08:00:54] 2025-11-23 13:00:53,203 [wrapper] pandaids: 6895324418
[2025-11-23 08:00:54] 2025-11-23 13:00:53,363 [wrapper] cleanup supervisor_pilot 2523575 1441190
[2025-11-23 08:00:54] 2025-11-23 13:00:53,397 [wrapper] Test setup, not cleaning
[2025-11-23 08:00:54] 2025-11-23 13:00:53,452 [wrapper] apfmon messages muted
[2025-11-23 08:00:54] 2025-11-23 13:00:53,482 [wrapper] ==== wrapper stdout END ====
[2025-11-23 08:00:54] 2025-11-23 13:00:53,528 [wrapper] ==== wrapper stderr END ====
[2025-11-23 08:00:54]  *** Error codes and diagnostics ***
[2025-11-23 08:00:54]     "exeErrorCode": 0,
[2025-11-23 08:00:54]     "exeErrorDiag": "",
[2025-11-23 08:00:54]     "pilotErrorCode": 0,
[2025-11-23 08:00:54]     "pilotErrorDiag": "",
[2025-11-23 08:00:54]  *** Listing of results directory ***
[2025-11-23 08:00:54] total 1328224
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 08:51 pilot3.tar.gz
[2025-11-23 08:00:54] -rwx------. 1 boincer umatlas     36292 Nov 21 09:21 runpilot2-wrapper.sh
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 09:21 queuedata.json
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas       100 Nov 22 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 08:00:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 19:27 run_atlas
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas       105 Nov 22 19:27 job.xml
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas 411394950 Nov 22 19:27 EVNT.47483658._000022.pool.root.1
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:27 start_atlas.sh
[2025-11-23 08:00:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 19:27 shared
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas    590103 Nov 22 19:27 input.tar.gz
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas         0 Nov 22 19:27 boinc_lockfile
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas      2784 Nov 22 19:27 pandaJob.out
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas        57 Nov 22 19:27 setup.sh.local
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas    989784 Nov 22 19:28 agis_schedconf.cvmfs.json
[2025-11-23 08:00:54] drwx------. 5 boincer umatlas      4096 Nov 22 19:28 pilot3
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas       533 Nov 23 07:26 boinc_task_state.xml
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas      6840 Nov 23 07:57 init_data.xml
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas 928545391 Nov 23 07:57 HITS.47556137._000218.pool.root.1
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas      1054 Nov 23 07:59 memory_monitor_summary.json
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas   1526164 Nov 23 07:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas   1971343 Nov 23 07:59 log.47556137._000218.job.log.tgz.1
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas      8631 Nov 23 08:00 heartbeat.json
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas        95 Nov 23 08:00 pilot_heartbeat.json
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas       823 Nov 23 08:00 pilotlog.txt
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas        29 Nov 23 08:00 wrapper_checkpoint.txt
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas   6147219 Nov 23 08:00 log.47556137._000218.job.log.1
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 08:00 boinc_mmap_file
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas       353 Nov 23 08:00 output.list
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas       620 Nov 23 08:00 runtime_log
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas   8140800 Nov 23 08:00 result.tar.gz
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas      9353 Nov 23 08:00 runtime_log.err
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas       662 Nov 23 08:00 pJsNDmGChg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIfHKDmUCkTcn.diag
[2025-11-23 08:00:54] -rw-r--r--. 1 boincer umatlas     21868 Nov 23 08:00 stderr.txt
[2025-11-23 08:00:54] HITS file was successfully produced:
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas 928545391 Nov 23 07:57 shared/HITS.pool.root.1
[2025-11-23 08:00:54]  *** Contents of shared directory: ***
[2025-11-23 08:00:54] total 1317092
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas 411394950 Nov 22 19:27 ATLAS.root_0
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 19:27 start_atlas.sh
[2025-11-23 08:00:54] -rw-r--r--. 2 boincer umatlas    590103 Nov 22 19:27 input.tar.gz
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas 928545391 Nov 23 07:57 HITS.pool.root.1
[2025-11-23 08:00:54] -rw-------. 1 boincer umatlas   8140800 Nov 23 08:00 result.tar.gz
08:00:56 (1437495): run_atlas exited; CPU time 237543.569300
08:00:56 (1437495): called boinc_finish(0)

</stderr_txt>
]]>

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