Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:53:31 (21835): wrapper (7.7.26015): starting
18:53:31 (21835): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 18:53:31] Arguments: --nthreads 8
[2025-11-22 18:53:31] Threads: 8
[2025-11-22 18:53:31] Checking for CVMFS
[2025-11-22 18:53:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:53:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:53:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:53:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:53:31] 2.11.2.0 2830 49394 84344 153190 2 82 11781135 20275201 1 130560 0 9634612 99.747 3130505 27822 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 18:53:31] CVMFS is ok
[2025-11-22 18:53:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 18:53:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 18:53:31] Further information can be found at the LHC@home message board.
[2025-11-22 18:53:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:53:31] Checking for apptainer binary...
[2025-11-22 18:53:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:53:31] Running /usr/bin/apptainer --version
[2025-11-22 18:53:31] apptainer version 1.3.2-1.el7
[2025-11-22 18:53:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:53:33] c-204-14.aglt2.org
[2025-11-22 18:53:33] apptainer works
[2025-11-22 18:53:33] Set ATHENA_PROC_NUMBER=8
[2025-11-22 18:53:33] Set ATHENA_CORE_NUMBER=8
[2025-11-22 18:53:33] Starting ATLAS job with PandaID=6895333069
[2025-11-22 18:53:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 06:54:30]  *** The last 200 lines of the pilot log: ***
[2025-11-23 06:54:30] 2025-11-23 11:53:54,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 06:54:30] 2025-11-23 11:53:54,724 | INFO     | time since job start (43203s) is within the limit (172800.0s)
[2025-11-23 06:54:30] 2025-11-23 11:53:55,726 [wrapper] supervise_pilot (15 min periods counter: 49)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,529 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 06:54:30] 2025-11-23 11:53:56,532 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-23 06:54:30] 2025-11-23 11:53:56,535 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895333069/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,536 | INFO     | extracted standard info from prmon json
[2025-11-23 06:54:30] 2025-11-23 11:53:56,536 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 06:54:30] 2025-11-23 11:53:56,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 06:54:30] 2025-11-23 11:53:56,550 | INFO     | fitting pss+swap vs Time
[2025-11-23 06:54:30] 2025-11-23 11:53:56,551 | INFO     | sum of square deviations: 110046541731.06224
[2025-11-23 06:54:30] 2025-11-23 11:53:56,561 | INFO     | sum of deviations: 572984885731.2589
[2025-11-23 06:54:30] 2025-11-23 11:53:56,561 | INFO     | mean x: 1763877228.1242938
[2025-11-23 06:54:30] 2025-11-23 11:53:56,562 | INFO     | mean y: 3192359.2697740113
[2025-11-23 06:54:30] 2025-11-23 11:53:56,562 | INFO     | intersect: -9180876272.988667
[2025-11-23 06:54:30] 2025-11-23 11:53:56,563 | INFO     | chi2: 7.30576767344279
[2025-11-23 06:54:30] 2025-11-23 11:53:56,563 | INFO     | sum of square deviations: 107731600574.09943
[2025-11-23 06:54:30] 2025-11-23 11:53:56,573 | INFO     | sum of deviations: 823758846227.0059
[2025-11-23 06:54:30] 2025-11-23 11:53:56,573 | INFO     | mean x: 1763877075.628734
[2025-11-23 06:54:30] 2025-11-23 11:53:56,574 | INFO     | mean y: 3208865.9502133713
[2025-11-23 06:54:30] 2025-11-23 11:53:56,574 | INFO     | intersect: -13484099750.677917
[2025-11-23 06:54:30] 2025-11-23 11:53:56,575 | INFO     | chi2: 4.337056844917282
[2025-11-23 06:54:30] 2025-11-23 11:53:56,575 | INFO     | current chi2=4.337056844917282 (change=40.63516609372994 %)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,575 | INFO     | sum of square deviations: 105449357704.60864
[2025-11-23 06:54:30] 2025-11-23 11:53:56,586 | INFO     | sum of deviations: 969210896259.7434
[2025-11-23 06:54:30] 2025-11-23 11:53:56,586 | INFO     | mean x: 1763876923.1332378
[2025-11-23 06:54:30] 2025-11-23 11:53:56,586 | INFO     | mean y: 3218583.153295129
[2025-11-23 06:54:30] 2025-11-23 11:53:56,586 | INFO     | intersect: -16209006609.82318
[2025-11-23 06:54:30] 2025-11-23 11:53:56,587 | INFO     | chi2: 3.2841102463531473
[2025-11-23 06:54:30] 2025-11-23 11:53:56,587 | INFO     | current chi2=3.2841102463531473 (change=24.27790633636985 %)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,587 | INFO     | right removable region: 697
[2025-11-23 06:54:30] 2025-11-23 11:53:56,588 | INFO     | sum of square deviations: 107731373898.3556
[2025-11-23 06:54:30] 2025-11-23 11:53:56,598 | INFO     | sum of deviations: 358086346562.71875
[2025-11-23 06:54:30] 2025-11-23 11:53:56,598 | INFO     | mean x: 1763877380.6273115
[2025-11-23 06:54:30] 2025-11-23 11:53:56,599 | INFO     | mean y: 3206491.3271692744
[2025-11-23 06:54:30] 2025-11-23 11:53:56,599 | INFO     | intersect: -5859713326.342519
[2025-11-23 06:54:30] 2025-11-23 11:53:56,600 | INFO     | chi2: 5.083511270983475
[2025-11-23 06:54:30] 2025-11-23 11:53:56,600 | INFO     | current chi2=5.083511270983475 (change=30.41783563057231 %)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,600 | INFO     | sum of square deviations: 105448947114.39554
[2025-11-23 06:54:30] 2025-11-23 11:53:56,610 | INFO     | sum of deviations: 315761591866.7111
[2025-11-23 06:54:30] 2025-11-23 11:53:56,611 | INFO     | mean x: 1763877533.1289399
[2025-11-23 06:54:30] 2025-11-23 11:53:56,611 | INFO     | mean y: 3209317.5143266474
[2025-11-23 06:54:30] 2025-11-23 11:53:56,611 | INFO     | intersect: -5278633630.756197
[2025-11-23 06:54:30] 2025-11-23 11:53:56,612 | INFO     | chi2: 5.04000328994175
[2025-11-23 06:54:30] 2025-11-23 11:53:56,612 | INFO     | current chi2=5.04000328994175 (change=0.855864750218365 %)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,612 | INFO     | left removable region: 20
[2025-11-23 06:54:30] 2025-11-23 11:53:56,613 | INFO     | sum of square deviations: 96215056278.05856
[2025-11-23 06:54:30] 2025-11-23 11:53:56,622 | INFO     | sum of deviations: 686020792338.5972
[2025-11-23 06:54:30] 2025-11-23 11:53:56,622 | INFO     | mean x: 1763877502.6395864
[2025-11-23 06:54:30] 2025-11-23 11:53:56,623 | INFO     | mean y: 3241395.5598227475
[2025-11-23 06:54:30] 2025-11-23 11:53:56,623 | INFO     | intersect: -12573341612.945713
[2025-11-23 06:54:30] 2025-11-23 11:53:56,623 | INFO     | chi2: 0.8229279147483209
[2025-11-23 06:54:30] 2025-11-23 11:53:56,624 | INFO     | current memory leak: 7.13 B/s (using 677 data points, chi2=0.82)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,624 | INFO     | could have reported an average CPU frequency of 2167 MHz (27 samples)
[2025-11-23 06:54:30] 2025-11-23 11:53:56,624 | INFO     | ..............................
[2025-11-23 06:54:30] 2025-11-23 11:53:56,624 | INFO     | . Timing measurements:
[2025-11-23 06:54:30] 2025-11-23 11:53:56,624 | INFO     | . get job = 0 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . initial setup = 2 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . payload setup = 9 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . stage-in = 0 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . payload execution = 43164 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . stage-out = 3 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | . log creation = 0 s
[2025-11-23 06:54:30] 2025-11-23 11:53:56,625 | INFO     | ..............................
[2025-11-23 06:54:30] 2025-11-23 11:53:56,729 | INFO     | time since job start (43205s) is within the limit (172800.0s)
[2025-11-23 06:54:30] 2025-11-23 11:53:57,059 | INFO     | 
[2025-11-23 06:54:30] 2025-11-23 11:53:57,059 | INFO     | job summary report
[2025-11-23 06:54:30] 2025-11-23 11:53:57,059 | INFO     | --------------------------------------------------
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | PanDA job id: 6895333069
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | task id: 47556149
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | errors: (none)
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | pilot state: finished 
[2025-11-23 06:54:30] 2025-11-23 11:53:57,060 | INFO     | transexitcode: 0
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | exeerrorcode: 0
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | exeerrordiag: 
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | exitcode: 0
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | exitmsg: OK
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | cpuconsumptiontime: 332170 s
[2025-11-23 06:54:30] 2025-11-23 11:53:57,061 | INFO     | nevents: 1000
[2025-11-23 06:54:30] 2025-11-23 11:53:57,062 | INFO     | neventsw: 0
[2025-11-23 06:54:30] 2025-11-23 11:53:57,062 | INFO     | pid: 32050
[2025-11-23 06:54:30] 2025-11-23 11:53:57,062 | INFO     | pgrp: 32050
[2025-11-23 06:54:30] 2025-11-23 11:53:57,062 | INFO     | corecount: 8
[2025-11-23 06:54:30] 2025-11-23 11:53:57,062 | INFO     | event service: False
[2025-11-23 06:54:30] 2025-11-23 11:53:57,063 | INFO     | sizes: {0: 2298633, 1: 2298832, 7: 2299094, 11: 2299122, 43177: 2344407, 43182: 2353585, 43188: 2353775}
[2025-11-23 06:54:30] 2025-11-23 11:53:57,063 | INFO     | --------------------------------------------------
[2025-11-23 06:54:30] 2025-11-23 11:53:57,063 | INFO     | 
[2025-11-23 06:54:30] 2025-11-23 11:53:57,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 06:54:30] 2025-11-23 11:53:57,092 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,093 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 06:54:30] 2025-11-23 11:53:57,097 | INFO     | job 6895333069 has completed (purged errors)
[2025-11-23 06:54:30] 2025-11-23 11:53:57,097 | INFO     | overall cleanup function is called
[2025-11-23 06:54:30] 2025-11-23 11:53:58,113 | INFO     | --- collectZombieJob: --- 10, [32050]
[2025-11-23 06:54:30] 2025-11-23 11:53:58,113 | INFO     | zombie collector waiting for pid 32050
[2025-11-23 06:54:30] 2025-11-23 11:53:58,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 06:54:30] 2025-11-23 11:53:58,113 | INFO     | collected zombie processes
[2025-11-23 06:54:30] 2025-11-23 11:53:58,114 | INFO     | will attempt to kill all subprocesses of pid=32050
[2025-11-23 06:54:30] 2025-11-23 11:53:58,202 | INFO     | process IDs to be killed: [32050] (in reverse order)
[2025-11-23 06:54:30] 2025-11-23 11:53:58,261 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 06:54:30] 2025-11-23 11:53:58,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 06:54:30] 2025-11-23 11:53:58,266 | INFO     | did not find any defunct processes belonging to 32050
[2025-11-23 06:54:30] 2025-11-23 11:53:58,268 | INFO     | did not find any defunct processes belonging to 32050
[2025-11-23 06:54:30] 2025-11-23 11:53:58,271 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 06:54:30] 2025-11-23 11:53:58,271 | INFO     | ready for new job
[2025-11-23 06:54:30] 2025-11-23 11:53:58,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 06:54:30] 2025-11-23 11:53:58,275 | INFO     | ***************************************
[2025-11-23 06:54:30] 2025-11-23 11:53:58,275 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 06:54:30] 2025-11-23 11:53:58,275 | INFO     | ***************************************
[2025-11-23 06:54:30] 2025-11-23 11:53:58,275 | INFO     | 
[2025-11-23 06:54:30] 2025-11-23 11:53:58,276 | INFO     | architecture information:
[2025-11-23 06:54:30] 2025-11-23 11:53:58,277 | INFO     | executing command: cat /etc/os-release
[2025-11-23 06:54:30] 2025-11-23 11:53:58,295 | INFO     | cat /etc/os-release:
[2025-11-23 06:54:30] NAME="CentOS Linux"
[2025-11-23 06:54:30] VERSION="7 (Core)"
[2025-11-23 06:54:30] ID="centos"
[2025-11-23 06:54:30] ID_LIKE="rhel fedora"
[2025-11-23 06:54:30] VERSION_ID="7"
[2025-11-23 06:54:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 06:54:30] ANSI_COLOR="0;31"
[2025-11-23 06:54:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 06:54:30] HOME_URL="https://www.centos.org/"
[2025-11-23 06:54:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 06:54:30] 
[2025-11-23 06:54:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 06:54:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 06:54:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 06:54:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 06:54:30] 
[2025-11-23 06:54:30] 2025-11-23 11:53:58,295 | INFO     | ***************************************
[2025-11-23 06:54:30] 2025-11-23 11:53:58,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 06:54:30] 2025-11-23 11:53:58,823 | INFO     | sufficient remaining disk space (17477664768 B)
[2025-11-23 06:54:30] 2025-11-23 11:53:58,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 06:54:30] 2025-11-23 11:53:58,824 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 06:54:30] 2025-11-23 11:53:58,824 | INFO     | update_server=False
[2025-11-23 06:54:30] 2025-11-23 11:53:58,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 06:54:30] 2025-11-23 11:53:58,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 06:54:30] 2025-11-23 11:53:58,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 06:54:30] 2025-11-23 11:53:58,825 | INFO     | aborting loop
[2025-11-23 06:54:30] 2025-11-23 11:53:59,114 | INFO     | all payload control threads have been joined
[2025-11-23 06:54:30] 2025-11-23 11:53:59,500 | INFO     | all data control threads have been joined
[2025-11-23 06:54:30] 2025-11-23 11:53:59,606 | INFO     | all job control threads have been joined
[2025-11-23 06:54:30] 2025-11-23 11:53:59,830 | INFO     | [job] retrieve thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:53:59,831 | INFO     | [job] job monitor thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:53:59,995 | INFO     | [payload] failed_post thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,034 | INFO     | [job] validate thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,064 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,119 | INFO     | [payload] control thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,343 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,376 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,398 | INFO     | [data] copytool_in thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,506 | INFO     | [data] control thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,612 | INFO     | [job] control thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:00,831 | INFO     | [data] copytool_out thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:01,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:01,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 06:54:30] 2025-11-23 11:54:01,384 | INFO     | [payload] validate_post thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:01,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 06:54:30] 2025-11-23 11:54:02,686 | INFO     | [monitor] cgroup control has ended
[2025-11-23 06:54:30] 2025-11-23 11:54:02,733 | INFO     | [job] queue monitor thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:05,265 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 06:54:30] 2025-11-23 11:54:06,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793440958272)>', '<ExcThread(monitor, started 139792192894720)>']
[2025-11-23 06:54:30] 2025-11-23 11:54:11,446 | INFO     | all workflow threads have been joined
[2025-11-23 06:54:30] 2025-11-23 11:54:11,446 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 06:54:30] 2025-11-23 11:54:11,447 | INFO     | traces error code: 0
[2025-11-23 06:54:30] 2025-11-23 11:54:11,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 06:54:30] 2025-11-23 11:54:29,945 | INFO     | PID=25535 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 06:54:30] 2025-11-23 11:54:29,945 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 06:54:30] 2025-11-23 11:54:29,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 06:54:30] 2025-11-23 11:54:29,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 06:54:30] 2025-11-23 11:54:29,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 06:54:30] 2025-11-23 11:54:29,946 | INFO     | [monitor] control thread has ended
[2025-11-23 06:54:30] 2025-11-23 11:54:30,067 [wrapper] ==== pilot stdout END ====
[2025-11-23 06:54:30] 2025-11-23 11:54:30,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 06:54:30] 2025-11-23 11:54:30,077 [wrapper] pilotpid: 25535
[2025-11-23 06:54:30] 2025-11-23 11:54:30,081 [wrapper] Pilot exit status: 0
[2025-11-23 06:54:30] 2025-11-23 11:54:30,099 [wrapper] pandaids: 6895333069
[2025-11-23 06:54:30] 2025-11-23 11:54:30,145 [wrapper] cleanup supervisor_pilot 30247 25536
[2025-11-23 06:54:30] 2025-11-23 11:54:30,151 [wrapper] Test setup, not cleaning
[2025-11-23 06:54:30] 2025-11-23 11:54:30,156 [wrapper] apfmon messages muted
[2025-11-23 06:54:30] 2025-11-23 11:54:30,161 [wrapper] ==== wrapper stdout END ====
[2025-11-23 06:54:30] 2025-11-23 11:54:30,166 [wrapper] ==== wrapper stderr END ====
[2025-11-23 06:54:30]  *** Error codes and diagnostics ***
[2025-11-23 06:54:30]     "exeErrorCode": 0,
[2025-11-23 06:54:30]     "exeErrorDiag": "",
[2025-11-23 06:54:30]     "pilotErrorCode": 0,
[2025-11-23 06:54:30]     "pilotErrorDiag": "",
[2025-11-23 06:54:30]  *** Listing of results directory ***
[2025-11-23 06:54:30] total 1306492
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 20:07 pilot3.tar.gz
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 20:25 queuedata.json
[2025-11-23 06:54:30] -rwx------ 1 boincer umatlas     36292 Nov 21 20:25 runpilot2-wrapper.sh
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas       100 Nov 22 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 06:54:30] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 18:53 run_atlas
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas       105 Nov 22 18:53 job.xml
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas 410852173 Nov 22 18:53 EVNT.47483658._001053.pool.root.1
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 18:53 start_atlas.sh
[2025-11-23 06:54:30] drwxrwx--x 2 boincer umatlas      4096 Nov 22 18:53 shared
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas    590095 Nov 22 18:53 input.tar.gz
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas         0 Nov 22 18:53 boinc_lockfile
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 18:53 pandaJob.out
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas        57 Nov 22 18:53 setup.sh.local
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas    989784 Nov 22 18:53 agis_schedconf.cvmfs.json
[2025-11-23 06:54:30] drwx------ 5 boincer umatlas      4096 Nov 22 18:53 pilot3
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas       532 Nov 23 06:35 boinc_task_state.xml
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 06:47 init_data.xml
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas 907262216 Nov 23 06:53 HITS.47556149._000392.pool.root.1
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas        95 Nov 23 06:53 pilot_heartbeat.json
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas      1061 Nov 23 06:53 memory_monitor_summary.json
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas   1526164 Nov 23 06:53 agis_ddmendpoints.agis.ALL.json
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas   1960190 Nov 23 06:53 log.47556149._000392.job.log.tgz.1
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas      8669 Nov 23 06:53 heartbeat.json
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas       745 Nov 23 06:54 pilotlog.txt
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas        29 Nov 23 06:54 wrapper_checkpoint.txt
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 06:54 boinc_mmap_file
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas   5950779 Nov 23 06:54 log.47556149._000392.job.log.1
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas       353 Nov 23 06:54 output.list
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas       620 Nov 23 06:54 runtime_log
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas   7925760 Nov 23 06:54 result.tar.gz
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas       668 Nov 23 06:54 sGlKDmzYrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmppJKDmsCE5Lo.diag
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 06:54 runtime_log.err
[2025-11-23 06:54:30] -rw-r--r-- 1 boincer umatlas     21273 Nov 23 06:54 stderr.txt
[2025-11-23 06:54:30] HITS file was successfully produced:
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas 907262216 Nov 23 06:53 shared/HITS.pool.root.1
[2025-11-23 06:54:30]  *** Contents of shared directory: ***
[2025-11-23 06:54:30] total 1295564
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas 410852173 Nov 22 18:53 ATLAS.root_0
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 18:53 start_atlas.sh
[2025-11-23 06:54:30] -rw-r--r-- 2 boincer umatlas    590095 Nov 22 18:53 input.tar.gz
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas 907262216 Nov 23 06:53 HITS.pool.root.1
[2025-11-23 06:54:30] -rw------- 1 boincer umatlas   7925760 Nov 23 06:54 result.tar.gz
06:54:31 (21835): run_atlas exited; CPU time 330031.472784
06:54:31 (21835): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN