Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:12:54 (522745): wrapper (7.7.26015): starting
13:12:54 (522745): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 13:12:54] Arguments: --nthreads 4
[2025-11-26 13:12:54] Threads: 4
[2025-11-26 13:12:54] Checking for CVMFS
[2025-11-26 13:12:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:12:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:12:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:12:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:12:55] 2.9.2.0 3312 2483 72544 153321 2 80 21923195 36864001 0 130560 1 979493 99.980 95230 183 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:12:55] CVMFS is ok
[2025-11-26 13:12:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:12:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:12:55] Further information can be found at the LHC@home message board.
[2025-11-26 13:12:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:12:55] Checking for apptainer binary...
[2025-11-26 13:12:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:12:55] Running /usr/bin/apptainer --version
[2025-11-26 13:12:55] apptainer version 1.4.1-1.1
[2025-11-26 13:12:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:12:55] atlasA237
[2025-11-26 13:12:55] apptainer works
[2025-11-26 13:12:55] Set ATHENA_PROC_NUMBER=4
[2025-11-26 13:12:55] Set ATHENA_CORE_NUMBER=4
[2025-11-26 13:12:55] Starting ATLAS job with PandaID=6895333385
[2025-11-26 13:12:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:30:57 (3013): wrapper (7.7.26015): starting
13:30:57 (3013): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 13:30:57] Arguments: --nthreads 4
[2025-11-26 13:30:57] Threads: 4
[2025-11-26 13:30:57] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:30:57] Checking for CVMFS
[2025-11-26 13:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:31:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:31:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:31:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:31:00] 2.9.2.0 3213 0 29168 153322 4 1 21934128 36864000 0 130560 0 0 0.000 1291 28065 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 13:31:00] CVMFS is ok
[2025-11-26 13:31:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:31:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:31:00] Further information can be found at the LHC@home message board.
[2025-11-26 13:31:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:31:00] Checking for apptainer binary...
[2025-11-26 13:31:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:31:00] Running /usr/bin/apptainer --version
[2025-11-26 13:31:00] apptainer version 1.4.1-1.1
[2025-11-26 13:31:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:31:00] atlasA237
[2025-11-26 13:31:00] apptainer works
[2025-11-26 13:31:00] Set ATHENA_PROC_NUMBER=4
[2025-11-26 13:31:00] Set ATHENA_CORE_NUMBER=4
[2025-11-26 13:31:00] Starting ATLAS job with PandaID=6895333385
[2025-11-26 13:31:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:34:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:34:16] 2025-11-26 12:33:46,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:34:16] 2025-11-26 12:33:46,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:34:16] 2025-11-26 12:33:46,030 | INFO     | aborting loop
[2025-11-26 13:34:16] 2025-11-26 12:33:46,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:34:16] 2025-11-26 12:33:46,085 | INFO     | all data control threads have been joined
[2025-11-26 13:34:16] 2025-11-26 12:33:47,031 | INFO     | all payload control threads have been joined
[2025-11-26 13:34:16] 2025-11-26 12:33:47,036 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,036 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,036 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,038 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,091 | INFO     | [data] control thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,290 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:47,519 | INFO     | all job control threads have been joined
[2025-11-26 13:34:16] 2025-11-26 12:33:47,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:34:16] 2025-11-26 12:33:48,036 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,037 | INFO     | [payload] control thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,095 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,156 | INFO     | [job] validate thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,270 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,339 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,350 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:48,520 | INFO     | [job] control thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:33:51,700 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:34:16] 2025-11-26 12:34:10,453 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:34:16] 2025-11-26 12:34:11,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140501402429248)>', '<ExcThread(monitor, started 140500191409920)>']
[2025-11-26 13:34:16] 2025-11-26 12:34:12,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:34:16] 2025-11-26 12:34:12,169 | INFO     | [monitor] control thread has ended
[2025-11-26 13:34:16] 2025-11-26 12:34:16,730 | INFO     | all workflow threads have been joined
[2025-11-26 13:34:16] 2025-11-26 12:34:16,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:34:16] 2025-11-26 12:34:16,731 | INFO     | traces error code: 0
[2025-11-26 13:34:16] 2025-11-26 12:34:16,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:34:16] 2025-11-26 12:34:16,797 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:34:16] 2025-11-26 12:34:16,800 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:34:16] 2025-11-26 12:34:16,803 [wrapper] pilotpid: 7367
[2025-11-26 13:34:16] 2025-11-26 12:34:16,807 [wrapper] Pilot exit status: 0
[2025-11-26 13:34:16] 2025-11-26 12:34:16,817 [wrapper] pandaids: 6895333385 6895333385
[2025-11-26 13:34:16] 2025-11-26 12:34:16,836 [wrapper] cleanup supervisor_pilot    7373 7368
[2025-11-26 13:34:16] 2025-11-26 12:34:16,840 [wrapper] Test setup, not cleaning
[2025-11-26 13:34:16] 2025-11-26 12:34:16,843 [wrapper] apfmon messages muted
[2025-11-26 13:34:16] 2025-11-26 12:34:16,846 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:34:16] 2025-11-26 12:34:16,850 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:34:16]  *** Error codes and diagnostics ***
[2025-11-26 13:34:16]     "exeErrorCode": 66,
[2025-11-26 13:34:16]     "exeErrorDiag": "File EVNT.47483658._000202.pool.root.1 did not pass corruption test",
[2025-11-26 13:34:16]     "pilotErrorCode": 1305,
[2025-11-26 13:34:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: File EVNT.47483658._000202.pool.root.1 did not pass corruption test",
[2025-11-26 13:34:16]  *** Listing of results directory ***
[2025-11-26 13:34:16] total 36772
[2025-11-26 13:34:16] drwx------ 5 boinc boinc     4096 Nov  5 18:16 pilot3
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     5112 Nov 22 02:38 queuedata.json
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc   576529 Nov 22 02:38 pilot3.tar.gz
[2025-11-26 13:34:16] -rwx------ 1 boinc boinc    36292 Nov 22 02:38 runpilot2-wrapper.sh
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc      100 Nov 26 13:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:34:16] -rwxr-xr-x 1 boinc boinc     7986 Nov 26 13:12 run_atlas
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc      105 Nov 26 13:12 job.xml
[2025-11-26 13:34:16] -rw-r--r-- 3 boinc boinc 16777216 Nov 26 13:12 EVNT.47483658._000202.pool.root.1
[2025-11-26 13:34:16] -rw-r--r-- 3 boinc boinc 16777216 Nov 26 13:12 ATLAS.root_0
[2025-11-26 13:34:16] -rw-r--r-- 2 boinc boinc   590098 Nov 26 13:12 input.tar.gz
[2025-11-26 13:34:16] -rw-r--r-- 2 boinc boinc    15847 Nov 26 13:12 start_atlas.sh
[2025-11-26 13:34:16] drwxrwx--x 2 boinc boinc     4096 Nov 26 13:12 shared
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc        0 Nov 26 13:12 boinc_setup_complete
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc        0 Nov 26 13:12 boinc_lockfile
[2025-11-26 13:34:16] -rw------- 1 boinc boinc  1516240 Nov 26 13:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     6209 Nov 26 13:30 init_data.xml
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     2785 Nov 26 13:31 pandaJob.out
[2025-11-26 13:34:16] -rw------- 1 boinc boinc   991830 Nov 26 13:31 agis_schedconf.cvmfs.json
[2025-11-26 13:34:16] -rw------- 1 boinc boinc      963 Nov 26 13:31 memory_monitor_summary.json
[2025-11-26 13:34:16] -rw------- 1 boinc boinc    16986 Nov 26 13:31 log.47556137._001998.job.log.tgz.1
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc      522 Nov 26 13:32 boinc_task_state.xml
[2025-11-26 13:34:16] -rw------- 1 boinc boinc       97 Nov 26 13:33 pilot_heartbeat.json
[2025-11-26 13:34:16] -rw------- 1 boinc boinc     6647 Nov 26 13:33 heartbeat.json
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     8192 Nov 26 13:34 boinc_mmap_file
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc       22 Nov 26 13:34 wrapper_checkpoint.txt
[2025-11-26 13:34:16] -rw------- 1 boinc boinc     4556 Nov 26 13:34 pilotlog.txt
[2025-11-26 13:34:16] -rw------- 1 boinc boinc    86040 Nov 26 13:34 log.47556137._001998.job.log.1
[2025-11-26 13:34:16] -rw------- 1 boinc boinc      186 Nov 26 13:34 output.list
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc      620 Nov 26 13:34 runtime_log
[2025-11-26 13:34:16] -rw------- 1 boinc boinc   122880 Nov 26 13:34 result.tar.gz
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     8844 Nov 26 13:34 runtime_log.err
[2025-11-26 13:34:16] -rw------- 1 boinc boinc      779 Nov 26 13:34 oAYNDmglrg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJtHKDmi3WE6n.diag
[2025-11-26 13:34:16] -rw-r--r-- 1 boinc boinc     9009 Nov 26 13:34 stderr.txt
[2025-11-26 13:34:16] No HITS result produced
[2025-11-26 13:34:16]  *** Contents of shared directory: ***
[2025-11-26 13:34:16] total 17100
[2025-11-26 13:34:16] -rw-r--r-- 3 boinc boinc 16777216 Nov 26 13:12 ATLAS.root_0
[2025-11-26 13:34:16] -rw-r--r-- 2 boinc boinc   590098 Nov 26 13:12 input.tar.gz
[2025-11-26 13:34:16] -rw-r--r-- 2 boinc boinc    15847 Nov 26 13:12 start_atlas.sh
[2025-11-26 13:34:16] -rw------- 1 boinc boinc   122880 Nov 26 13:34 result.tar.gz
13:34:18 (3013): run_atlas exited; CPU time 10.066602
13:34:18 (3013): called boinc_finish(0)

</stderr_txt>
]]>

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