Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:32:35 (29698): wrapper (7.7.26015): starting
18:32:35 (29698): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 18:32:35] Arguments: --nthreads 8
[2025-11-22 18:32:35] Threads: 8
[2025-11-22 18:32:35] Checking for CVMFS
[2025-11-22 18:32:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 18:32:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 18:32:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 18:32:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 18:32:36] 2.11.2.0 4697 112569 135060 153190 1 82 15581818 18432001 1885 130560 0 79755232 99.973 4816586 32102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 18:32:36] CVMFS is ok
[2025-11-22 18:32:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 18:32:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 18:32:36] Further information can be found at the LHC@home message board.
[2025-11-22 18:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 18:32:36] Checking for apptainer binary...
[2025-11-22 18:32:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 18:32:36] Running /usr/bin/apptainer --version
[2025-11-22 18:32:36] apptainer version 1.3.2-1.el7
[2025-11-22 18:32:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 18:32:37] c-206-21.aglt2.org
[2025-11-22 18:32:37] apptainer works
[2025-11-22 18:32:37] Set ATHENA_PROC_NUMBER=8
[2025-11-22 18:32:37] Set ATHENA_CORE_NUMBER=8
[2025-11-22 18:32:37] Starting ATLAS job with PandaID=6895333075
[2025-11-22 18:32:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:51:01]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:51:01] 2025-11-23 18:50:27,983 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 13:51:01] 2025-11-23 18:50:27,991 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2461.2916666666665
[2025-11-23 13:51:01] 2025-11-23 18:50:27,994 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895333075/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:51:01] 2025-11-23 18:50:27,995 | INFO     | extracted standard info from prmon json
[2025-11-23 13:51:01] 2025-11-23 18:50:27,995 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:51:01] 2025-11-23 18:50:27,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:51:01] 2025-11-23 18:50:28,010 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:51:01] 2025-11-23 18:50:28,011 | INFO     | sum of square deviations: 456988500789.4008
[2025-11-23 13:51:01] 2025-11-23 18:50:28,034 | INFO     | sum of deviations: 2169167200372.7534
[2025-11-23 13:51:01] 2025-11-23 18:50:28,034 | INFO     | mean x: 1763889075.0817223
[2025-11-23 13:51:01] 2025-11-23 18:50:28,034 | INFO     | mean y: 2867558.776801406
[2025-11-23 13:51:01] 2025-11-23 18:50:28,034 | INFO     | intersect: -8369707068.711172
[2025-11-23 13:51:01] 2025-11-23 18:50:28,035 | INFO     | chi2: 5.139905886217147
[2025-11-23 13:51:01] 2025-11-23 18:50:28,036 | INFO     | sum of square deviations: 450991557695.19965
[2025-11-23 13:51:01] 2025-11-23 18:50:28,059 | INFO     | sum of deviations: 2474505832546.5127
[2025-11-23 13:51:01] 2025-11-23 18:50:28,059 | INFO     | mean x: 1763888922.5842896
[2025-11-23 13:51:01] 2025-11-23 18:50:28,060 | INFO     | mean y: 2875319.219770521
[2025-11-23 13:51:01] 2025-11-23 18:50:28,060 | INFO     | intersect: -9675251360.590288
[2025-11-23 13:51:01] 2025-11-23 18:50:28,061 | INFO     | chi2: 2.9271976474940855
[2025-11-23 13:51:01] 2025-11-23 18:50:28,061 | INFO     | current chi2=2.9271976474940855 (change=43.0495866598749 %)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,062 | INFO     | sum of square deviations: 445047313263.4861
[2025-11-23 13:51:01] 2025-11-23 18:50:28,085 | INFO     | sum of deviations: 2626753231555.4126
[2025-11-23 13:51:01] 2025-11-23 18:50:28,085 | INFO     | mean x: 1763888770.0868795
[2025-11-23 13:51:01] 2025-11-23 18:50:28,085 | INFO     | mean y: 2879222.7916666665
[2025-11-23 13:51:01] 2025-11-23 18:50:28,085 | INFO     | intersect: -10407925176.7552
[2025-11-23 13:51:01] 2025-11-23 18:50:28,086 | INFO     | chi2: 2.2796813464769823
[2025-11-23 13:51:01] 2025-11-23 18:50:28,086 | INFO     | current chi2=2.2796813464769823 (change=22.120689444097795 %)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,087 | INFO     | right removable region: 1127
[2025-11-23 13:51:01] 2025-11-23 18:50:28,088 | INFO     | sum of square deviations: 450991153875.19965
[2025-11-23 13:51:01] 2025-11-23 18:50:28,130 | INFO     | sum of deviations: 1875387644445.058
[2025-11-23 13:51:01] 2025-11-23 18:50:28,131 | INFO     | mean x: 1763889227.5842896
[2025-11-23 13:51:01] 2025-11-23 18:50:28,131 | INFO     | mean y: 2875020.4863195056
[2025-11-23 13:51:01] 2025-11-23 18:50:28,131 | INFO     | intersect: -7332027305.550684
[2025-11-23 13:51:01] 2025-11-23 18:50:28,133 | INFO     | chi2: 3.113692192887016
[2025-11-23 13:51:01] 2025-11-23 18:50:28,133 | INFO     | current chi2=3.113692192887016 (change=39.421221675741194 %)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,135 | INFO     | sum of square deviations: 445046712718.9988
[2025-11-23 13:51:01] 2025-11-23 18:50:28,175 | INFO     | sum of deviations: 1799656133698.1387
[2025-11-23 13:51:01] 2025-11-23 18:50:28,175 | INFO     | mean x: 1763889380.08422
[2025-11-23 13:51:01] 2025-11-23 18:50:28,175 | INFO     | mean y: 2876962.945921986
[2025-11-23 13:51:01] 2025-11-23 18:50:28,176 | INFO     | intersect: -7129844729.659586
[2025-11-23 13:51:01] 2025-11-23 18:50:28,177 | INFO     | chi2: 3.059685869554303
[2025-11-23 13:51:01] 2025-11-23 18:50:28,177 | INFO     | current chi2=3.059685869554303 (change=1.7344785543055927 %)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,177 | INFO     | left removable region: 20
[2025-11-23 13:51:01] 2025-11-23 18:50:28,178 | INFO     | sum of square deviations: 420650436457.07306
[2025-11-23 13:51:01] 2025-11-23 18:50:28,207 | INFO     | sum of deviations: 2166879686525.5425
[2025-11-23 13:51:01] 2025-11-23 18:50:28,208 | INFO     | mean x: 1763889349.5934958
[2025-11-23 13:51:01] 2025-11-23 18:50:28,208 | INFO     | mean y: 2891611.0478771455
[2025-11-23 13:51:01] 2025-11-23 18:50:28,208 | INFO     | intersect: -9083360701.21602
[2025-11-23 13:51:01] 2025-11-23 18:50:28,209 | INFO     | chi2: 0.15417579812761462
[2025-11-23 13:51:01] 2025-11-23 18:50:28,209 | INFO     | current memory leak: 5.15 B/s (using 1107 data points, chi2=0.15)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | could have reported an average CPU frequency of 2630 MHz (41 samples)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | ..............................
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | . Timing measurements:
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | . get job = 0 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | . initial setup = 2 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,210 | INFO     | . payload setup = 5 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,211 | INFO     | . stage-in = 0 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,211 | INFO     | . payload execution = 69423 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,211 | INFO     | . stage-out = 4 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,211 | INFO     | . log creation = 0 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,211 | INFO     | ..............................
[2025-11-23 13:51:01] 2025-11-23 18:50:28,297 | INFO     | 
[2025-11-23 13:51:01] 2025-11-23 18:50:28,297 | INFO     | job summary report
[2025-11-23 13:51:01] 2025-11-23 18:50:28,297 | INFO     | --------------------------------------------------
[2025-11-23 13:51:01] 2025-11-23 18:50:28,297 | INFO     | PanDA job id: 6895333075
[2025-11-23 13:51:01] 2025-11-23 18:50:28,297 | INFO     | task id: 47556149
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | errors: (none)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | pilot state: finished 
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | transexitcode: 0
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | exeerrorcode: 0
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | exeerrordiag: 
[2025-11-23 13:51:01] 2025-11-23 18:50:28,298 | INFO     | exitcode: 0
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | exitmsg: OK
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | cpuconsumptiontime: 535683 s
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | nevents: 1000
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | neventsw: 0
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | pid: 7562
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | pgrp: 7562
[2025-11-23 13:51:01] 2025-11-23 18:50:28,299 | INFO     | corecount: 8
[2025-11-23 13:51:01] 2025-11-23 18:50:28,300 | INFO     | event service: False
[2025-11-23 13:51:01] 2025-11-23 18:50:28,300 | INFO     | sizes: {0: 2298633, 1: 2298832, 5: 2299094, 12: 2299150, 69432: 2355318, 69436: 2364312, 69439: 2364496, 69443: 2364838}
[2025-11-23 13:51:01] 2025-11-23 18:50:28,300 | INFO     | --------------------------------------------------
[2025-11-23 13:51:01] 2025-11-23 18:50:28,300 | INFO     | 
[2025-11-23 13:51:01] 2025-11-23 18:50:28,300 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 13:51:01] 2025-11-23 18:50:28,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,334 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,334 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,334 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:51:01] 2025-11-23 18:50:28,334 | INFO     | job 6895333075 has completed (purged errors)
[2025-11-23 13:51:01] 2025-11-23 18:50:28,335 | INFO     | overall cleanup function is called
[2025-11-23 13:51:01] 2025-11-23 18:50:29,351 | INFO     | --- collectZombieJob: --- 10, [7562]
[2025-11-23 13:51:01] 2025-11-23 18:50:29,352 | INFO     | zombie collector waiting for pid 7562
[2025-11-23 13:51:01] 2025-11-23 18:50:29,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:51:01] 2025-11-23 18:50:29,352 | INFO     | collected zombie processes
[2025-11-23 13:51:01] 2025-11-23 18:50:29,352 | INFO     | will attempt to kill all subprocesses of pid=7562
[2025-11-23 13:51:01] 2025-11-23 18:50:29,532 | INFO     | process IDs to be killed: [7562] (in reverse order)
[2025-11-23 13:51:01] 2025-11-23 18:50:29,594 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:51:01] 2025-11-23 18:50:29,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:51:01] 2025-11-23 18:50:29,597 | INFO     | did not find any defunct processes belonging to 7562
[2025-11-23 13:51:01] 2025-11-23 18:50:29,600 | INFO     | did not find any defunct processes belonging to 7562
[2025-11-23 13:51:01] 2025-11-23 18:50:29,601 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:51:01] 2025-11-23 18:50:29,601 | INFO     | ready for new job
[2025-11-23 13:51:01] 2025-11-23 18:50:29,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:51:01] 2025-11-23 18:50:29,605 | INFO     | ***************************************
[2025-11-23 13:51:01] 2025-11-23 18:50:29,605 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:51:01] 2025-11-23 18:50:29,605 | INFO     | ***************************************
[2025-11-23 13:51:01] 2025-11-23 18:50:29,605 | INFO     | 
[2025-11-23 13:51:01] 2025-11-23 18:50:29,606 | INFO     | architecture information:
[2025-11-23 13:51:01] 2025-11-23 18:50:29,607 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:51:01] 2025-11-23 18:50:29,617 | INFO     | cat /etc/os-release:
[2025-11-23 13:51:01] NAME="CentOS Linux"
[2025-11-23 13:51:01] VERSION="7 (Core)"
[2025-11-23 13:51:01] ID="centos"
[2025-11-23 13:51:01] ID_LIKE="rhel fedora"
[2025-11-23 13:51:01] VERSION_ID="7"
[2025-11-23 13:51:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:51:01] ANSI_COLOR="0;31"
[2025-11-23 13:51:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:51:01] HOME_URL="https://www.centos.org/"
[2025-11-23 13:51:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:51:01] 
[2025-11-23 13:51:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:51:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:51:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:51:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:51:01] 
[2025-11-23 13:51:01] 2025-11-23 18:50:29,617 | INFO     | ***************************************
[2025-11-23 13:51:01] 2025-11-23 18:50:30,120 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 13:51:01] 2025-11-23 18:50:30,135 | INFO     | sufficient remaining disk space (25547505664 B)
[2025-11-23 13:51:01] 2025-11-23 18:50:30,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:51:01] 2025-11-23 18:50:30,136 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:51:01] 2025-11-23 18:50:30,136 | INFO     | update_server=False
[2025-11-23 13:51:01] 2025-11-23 18:50:30,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:51:01] 2025-11-23 18:50:30,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:51:01] 2025-11-23 18:50:30,137 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:51:01] 2025-11-23 18:50:30,250 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 13:51:01] 2025-11-23 18:50:30,250 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 13:51:01] 2025-11-23 18:50:30,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:51:01] 2025-11-23 18:50:30,250 | INFO     | will abort loop
[2025-11-23 13:51:01] 2025-11-23 18:50:30,468 | INFO     | all payload control threads have been joined
[2025-11-23 13:51:01] 2025-11-23 18:50:30,656 | INFO     | all data control threads have been joined
[2025-11-23 13:51:01] 2025-11-23 18:50:31,142 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,142 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,256 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,299 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,461 | INFO     | all job control threads have been joined
[2025-11-23 13:51:01] 2025-11-23 18:50:31,474 | INFO     | [payload] control thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,572 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,606 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:51:01] 2025-11-23 18:50:31,662 | INFO     | [data] control thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:31,665 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:32,074 | INFO     | [job] validate thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:32,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:32,357 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:32,467 | INFO     | [job] control thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:32,740 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:33,625 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:34,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:51:01] 2025-11-23 18:50:43,712 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:51:01] 2025-11-23 18:50:44,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623141189440)>', '<ExcThread(monitor, started 139622692656896)>']
[2025-11-23 13:51:01] 2025-11-23 18:50:49,300 | INFO     | all workflow threads have been joined
[2025-11-23 13:51:01] 2025-11-23 18:50:49,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:51:01] 2025-11-23 18:50:49,301 | INFO     | traces error code: 0
[2025-11-23 13:51:01] 2025-11-23 18:50:49,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:51:01] 2025-11-23 18:50:59,790 | INFO     | 69463s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 13:51:01] 2025-11-23 18:51:01,003 | INFO     | PID=919 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-23 13:51:01] 2025-11-23 18:51:01,003 | INFO     | .. there are 3 such processes running
[2025-11-23 13:51:01] 2025-11-23 18:51:01,003 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:51:01] 2025-11-23 18:51:01,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:51:01] 2025-11-23 18:51:01,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:51:01] 2025-11-23 18:51:01,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:51:01] 2025-11-23 18:51:01,004 | INFO     | [monitor] control thread has ended
[2025-11-23 13:51:01] 2025-11-23 18:51:01,126 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:51:01] 2025-11-23 18:51:01,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:51:01] 2025-11-23 18:51:01,133 [wrapper] pilotpid: 919
[2025-11-23 13:51:01] 2025-11-23 18:51:01,136 [wrapper] Pilot exit status: 0
[2025-11-23 13:51:01] 2025-11-23 18:51:01,145 [wrapper] pandaids: 6895333075
[2025-11-23 13:51:01] 2025-11-23 18:51:01,186 [wrapper] cleanup supervisor_pilot  2319 920
[2025-11-23 13:51:01] 2025-11-23 18:51:01,192 [wrapper] Test setup, not cleaning
[2025-11-23 13:51:01] 2025-11-23 18:51:01,195 [wrapper] apfmon messages muted
[2025-11-23 13:51:01] 2025-11-23 18:51:01,197 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:51:01] 2025-11-23 18:51:01,198 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:51:01]  *** Error codes and diagnostics ***
[2025-11-23 13:51:01]     "exeErrorCode": 0,
[2025-11-23 13:51:01]     "exeErrorDiag": "",
[2025-11-23 13:51:01]     "pilotErrorCode": 0,
[2025-11-23 13:51:01]     "pilotErrorDiag": "",
[2025-11-23 13:51:01]  *** Listing of results directory ***
[2025-11-23 13:51:01] total 1321072
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 20:07 pilot3.tar.gz
[2025-11-23 13:51:01] -rwx------ 1 boincer umatlas     36292 Nov 21 20:27 runpilot2-wrapper.sh
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 20:27 queuedata.json
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas       100 Nov 22 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:51:01] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 18:32 run_atlas
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas       105 Nov 22 18:32 job.xml
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas 410852173 Nov 22 18:32 EVNT.47483658._001053.pool.root.1
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 18:32 start_atlas.sh
[2025-11-23 13:51:01] drwxrwx--x 2 boincer umatlas      4096 Nov 22 18:32 shared
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas    590107 Nov 22 18:32 input.tar.gz
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas         0 Nov 22 18:32 boinc_lockfile
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 18:32 pandaJob.out
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas        57 Nov 22 18:32 setup.sh.local
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas    989784 Nov 22 18:32 agis_schedconf.cvmfs.json
[2025-11-23 13:51:01] drwx------ 5 boincer umatlas      4096 Nov 22 18:32 pilot3
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas       533 Nov 23 13:38 boinc_task_state.xml
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas      5954 Nov 23 13:49 init_data.xml
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas 914264844 Nov 23 13:49 HITS.47556149._000398.pool.root.1
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas      1066 Nov 23 13:50 memory_monitor_summary.json
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas   1526164 Nov 23 13:50 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas        95 Nov 23 13:50 pilot_heartbeat.json
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas   2297444 Nov 23 13:50 log.47556149._000398.job.log.tgz.1
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas      8665 Nov 23 13:50 heartbeat.json
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 13:50 boinc_mmap_file
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas        29 Nov 23 13:50 wrapper_checkpoint.txt
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas       934 Nov 23 13:51 pilotlog.txt
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas   9573796 Nov 23 13:51 log.47556149._000398.job.log.1
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas       353 Nov 23 13:51 output.list
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas       620 Nov 23 13:51 runtime_log
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas  11888640 Nov 23 13:51 result.tar.gz
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 13:51 runtime_log.err
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas       668 Nov 23 13:51 0g2LDmUarg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBtHKDm8bOWWn.diag
[2025-11-23 13:51:01] -rw-r--r-- 1 boincer umatlas     21286 Nov 23 13:51 stderr.txt
[2025-11-23 13:51:01] HITS file was successfully produced:
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas 914264844 Nov 23 13:49 shared/HITS.pool.root.1
[2025-11-23 13:51:01]  *** Contents of shared directory: ***
[2025-11-23 13:51:01] total 1306276
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas 410852173 Nov 22 18:32 ATLAS.root_0
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 18:32 start_atlas.sh
[2025-11-23 13:51:01] -rw-r--r-- 2 boincer umatlas    590107 Nov 22 18:32 input.tar.gz
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas 914264844 Nov 23 13:49 HITS.pool.root.1
[2025-11-23 13:51:01] -rw------- 1 boincer umatlas  11888640 Nov 23 13:51 result.tar.gz
13:51:02 (29698): run_atlas exited; CPU time 534707.378419
13:51:02 (29698): called boinc_finish(0)

</stderr_txt>
]]>

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