Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:43 (2872598): wrapper (7.7.26015): starting
00:02:43 (2872598): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:02:43] Arguments: --nthreads 9
[2025-11-23 00:02:43] Threads: 9
[2025-11-23 00:02:43] Checking for CVMFS
[2025-11-23 00:02:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:45] 2.13.2.0 7688 28145 189556 153197 3 280 36424378 39288833 9129 16776704 0 18321781 99.596 18571230 35685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:02:45] CVMFS is ok
[2025-11-23 00:02:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:45] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:45] Checking for apptainer binary...
[2025-11-23 00:02:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:45] Running /usr/bin/apptainer --version
[2025-11-23 00:02:45] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:46] c-210-1.aglt2.org
[2025-11-23 00:02:46] apptainer works
[2025-11-23 00:02:46] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:02:46] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:02:46] Starting ATLAS job with PandaID=6891565081
[2025-11-23 00:02:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:58:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:58:54] 2025-11-24 23:57:48,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:58:54] 2025-11-24 23:57:49,390 | INFO     | time since job start (154447s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:57:50,536 | INFO     | monitor loop #8810: job 0:6891565081 is in state 'finished'
[2025-11-24 18:58:54] 2025-11-24 23:57:50,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:58:54] 2025-11-24 23:57:51,416 | INFO     | PID=2879637 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:58:54] 2025-11-24 23:57:51,416 | INFO     | .. there are 7 such processes running
[2025-11-24 18:58:54] 2025-11-24 23:57:52,417 | INFO     | time since job start (154450s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:57:53,052 | INFO     | monitor loop #8811: job 0:6891565081 is in state 'finished'
[2025-11-24 18:58:54] 2025-11-24 23:57:53,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:58:54] 2025-11-24 23:57:54,424 | INFO     | time since job start (154452s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:57:55,557 | INFO     | monitor loop #8812: job 0:6891565081 is in state 'finished'
[2025-11-24 18:58:54] 2025-11-24 23:57:55,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:58:54] 2025-11-24 23:57:56,431 | INFO     | time since job start (154454s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:57:58,083 | INFO     | monitor loop #8813: job 0:6891565081 is in state 'finished'
[2025-11-24 18:58:54] 2025-11-24 23:57:58,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:58:54] 2025-11-24 23:57:58,469 | INFO     | time since job start (154456s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:57:59,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 18:58:54] 2025-11-24 23:57:59,017 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8669999999997
[2025-11-24 18:58:54] 2025-11-24 23:57:59,032 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891565081/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:58:54] 2025-11-24 23:57:59,033 | INFO     | extracted standard info from prmon json
[2025-11-24 18:58:54] 2025-11-24 23:57:59,033 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:58:54] 2025-11-24 23:57:59,033 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:58:54] 2025-11-24 23:57:59,114 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:58:54] 2025-11-24 23:57:59,122 | INFO     | sum of square deviations: 5021660913152.133
[2025-11-24 18:58:54] 2025-11-24 23:57:59,341 | INFO     | sum of deviations: 22083213073333.156
[2025-11-24 18:58:54] 2025-11-24 23:57:59,342 | INFO     | mean x: 1763951503.2498024
[2025-11-24 18:58:54] 2025-11-24 23:57:59,342 | INFO     | mean y: 3143911.374703557
[2025-11-24 18:58:54] 2025-11-24 23:57:59,342 | INFO     | intersect: -7753994129.4015665
[2025-11-24 18:58:54] 2025-11-24 23:57:59,345 | INFO     | chi2: 19.852515279906193
[2025-11-24 18:58:54] 2025-11-24 23:57:59,349 | INFO     | sum of square deviations: 4991953507963.733
[2025-11-24 18:58:54] 2025-11-24 23:57:59,595 | INFO     | sum of deviations: 23049135119541.152
[2025-11-24 18:58:54] 2025-11-24 23:57:59,595 | INFO     | mean x: 1763951350.7651484
[2025-11-24 18:58:54] 2025-11-24 23:57:59,595 | INFO     | mean y: 3148869.054257426
[2025-11-24 18:58:54] 2025-11-24 23:57:59,595 | INFO     | intersect: -8141468856.89641
[2025-11-24 18:58:54] 2025-11-24 23:57:59,603 | INFO     | chi2: 16.421193850330216
[2025-11-24 18:58:54] 2025-11-24 23:57:59,603 | INFO     | current chi2=16.421193850330216 (change=17.284063914304117 %)
[2025-11-24 18:58:54] 2025-11-24 23:57:59,603 | INFO     | right removable region: 2524
[2025-11-24 18:58:54] 2025-11-24 23:57:59,606 | INFO     | sum of square deviations: 4991941547693.731
[2025-11-24 18:58:54] 2025-11-24 23:57:59,933 | INFO     | sum of deviations: 20927072808283.312
[2025-11-24 18:58:54] 2025-11-24 23:57:59,941 | INFO     | mean x: 1763951655.7651484
[2025-11-24 18:58:54] 2025-11-24 23:57:59,941 | INFO     | mean y: 3149844.245148515
[2025-11-24 18:58:54] 2025-11-24 23:57:59,942 | INFO     | intersect: -7391637209.610386
[2025-11-24 18:58:54] 2025-11-24 23:57:59,953 | INFO     | chi2: 15.344141390240729
[2025-11-24 18:58:54] 2025-11-24 23:57:59,953 | INFO     | current chi2=15.344141390240729 (change=22.709333432568283 %)
[2025-11-24 18:58:54] 2025-11-24 23:57:59,953 | INFO     | left removable region: 10
[2025-11-24 18:58:54] 2025-11-24 23:57:59,961 | INFO     | sum of square deviations: 4926986371657.049
[2025-11-24 18:58:54] 2025-11-24 23:58:00,432 | INFO     | sum of deviations: 21082751602267.203
[2025-11-24 18:58:54] 2025-11-24 23:58:00,432 | INFO     | mean x: 1763951625.299125
[2025-11-24 18:58:54] 2025-11-24 23:58:00,433 | INFO     | mean y: 3161421.5648369133
[2025-11-24 18:58:54] 2025-11-24 23:58:00,433 | INFO     | intersect: -7544850922.964855
[2025-11-24 18:58:54] 2025-11-24 23:58:00,440 | INFO     | chi2: 7.394611023306922
[2025-11-24 18:58:54] 2025-11-24 23:58:00,440 | INFO     | current memory leak: 4.28 B/s (using 2514 data points, chi2=7.39)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,443 | INFO     | could have reported an average CPU frequency of 2599 MHz (87 samples)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | ..............................
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | . Timing measurements:
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | . get job = 0 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | . initial setup = 3 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | . payload setup = 48 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,447 | INFO     | . stage-in = 0 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,448 | INFO     | . payload execution = 154303 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,448 | INFO     | . stage-out = 9 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,448 | INFO     | . log creation = 3 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,448 | INFO     | ..............................
[2025-11-24 18:58:54] 2025-11-24 23:58:00,492 | INFO     | time since job start (154458s) is within the limit (172800.0s)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,666 | INFO     | 
[2025-11-24 18:58:54] 2025-11-24 23:58:00,666 | INFO     | job summary report
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | --------------------------------------------------
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | PanDA job id: 6891565081
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | task id: 47493068
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | errors: (none)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | pilot state: finished 
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | transexitcode: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | exeerrorcode: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:00,667 | INFO     | exeerrordiag: 
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | exitcode: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | exitmsg: OK
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | cpuconsumptiontime: 309109 s
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | nevents: 1000
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | neventsw: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | pid: 2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | pgrp: 2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | corecount: 9
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | event service: False
[2025-11-24 18:58:54] 2025-11-24 23:58:00,668 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 23: 2298852, 29: 2299142, 34: 2299170, 154355: 2394781, 154356: 2394780, 154367: 2404621, 154368: 2404677, 154394: 240
[2025-11-24 18:58:54] 2025-11-24 23:58:00,669 | INFO     | --------------------------------------------------
[2025-11-24 18:58:54] 2025-11-24 23:58:00,669 | INFO     | 
[2025-11-24 18:58:54] 2025-11-24 23:58:00,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 18:58:54] 2025-11-24 23:58:00,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,726 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:58:54] 2025-11-24 23:58:00,727 | INFO     | job 6891565081 has completed (purged errors)
[2025-11-24 18:58:54] 2025-11-24 23:58:00,727 | INFO     | overall cleanup function is called
[2025-11-24 18:58:54] 2025-11-24 23:58:01,791 | INFO     | --- collectZombieJob: --- 10, [2894308]
[2025-11-24 18:58:54] 2025-11-24 23:58:01,792 | INFO     | zombie collector waiting for pid 2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:01,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:58:54] 2025-11-24 23:58:01,792 | INFO     | collected zombie processes
[2025-11-24 18:58:54] 2025-11-24 23:58:01,792 | INFO     | will attempt to kill all subprocesses of pid=2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:02,521 | INFO     | process IDs to be killed: [2894308] (in reverse order)
[2025-11-24 18:58:54] 2025-11-24 23:58:02,653 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:58:54] 2025-11-24 23:58:02,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:58:54] 2025-11-24 23:58:02,698 | INFO     | did not find any defunct processes belonging to 2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:02,726 | INFO     | did not find any defunct processes belonging to 2894308
[2025-11-24 18:58:54] 2025-11-24 23:58:02,742 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:58:54] 2025-11-24 23:58:02,742 | INFO     | ready for new job
[2025-11-24 18:58:54] 2025-11-24 23:58:02,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:58:54] 2025-11-24 23:58:02,753 | INFO     | ***************************************
[2025-11-24 18:58:54] 2025-11-24 23:58:02,753 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:58:54] 2025-11-24 23:58:02,754 | INFO     | ***************************************
[2025-11-24 18:58:54] 2025-11-24 23:58:02,754 | INFO     | 
[2025-11-24 18:58:54] 2025-11-24 23:58:02,756 | INFO     | architecture information:
[2025-11-24 18:58:54] 2025-11-24 23:58:02,760 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:58:54] 2025-11-24 23:58:02,832 | INFO     | cat /etc/os-release:
[2025-11-24 18:58:54] NAME="CentOS Linux"
[2025-11-24 18:58:54] VERSION="7 (Core)"
[2025-11-24 18:58:54] ID="centos"
[2025-11-24 18:58:54] ID_LIKE="rhel fedora"
[2025-11-24 18:58:54] VERSION_ID="7"
[2025-11-24 18:58:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:58:54] ANSI_COLOR="0;31"
[2025-11-24 18:58:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:58:54] HOME_URL="https://www.centos.org/"
[2025-11-24 18:58:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:58:54] 
[2025-11-24 18:58:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:58:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:58:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:58:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:58:54] 
[2025-11-24 18:58:54] 2025-11-24 23:58:02,832 | INFO     | ***************************************
[2025-11-24 18:58:54] 2025-11-24 23:58:03,336 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 18:58:54] 2025-11-24 23:58:03,361 | INFO     | sufficient remaining disk space (49208623104 B)
[2025-11-24 18:58:54] 2025-11-24 23:58:03,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:58:54] 2025-11-24 23:58:03,362 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:58:54] 2025-11-24 23:58:03,362 | INFO     | update_server=False
[2025-11-24 18:58:54] 2025-11-24 23:58:03,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:58:54] 2025-11-24 23:58:03,363 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:58:54] 2025-11-24 23:58:03,946 | INFO     | all data control threads have been joined
[2025-11-24 18:58:54] 2025-11-24 23:58:03,951 | INFO     | all job control threads have been joined
[2025-11-24 18:58:54] 2025-11-24 23:58:04,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:58:54] 2025-11-24 23:58:04,138 | INFO     | aborting loop
[2025-11-24 18:58:54] 2025-11-24 23:58:04,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:58:54] 2025-11-24 23:58:04,368 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,471 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,525 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,535 | INFO     | [job] validate thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,555 | INFO     | all payload control threads have been joined
[2025-11-24 18:58:54] 2025-11-24 23:58:04,953 | INFO     | [data] control thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:04,957 | INFO     | [job] control thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,029 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,146 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,254 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,317 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,495 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,562 | INFO     | [payload] control thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:05,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:58:54] 2025-11-24 23:58:06,202 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:06,693 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:07,381 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:58:54] 2025-11-24 23:58:34,246 | INFO     | PID=2879637 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:58:54] 2025-11-24 23:58:34,247 | INFO     | .. there are 8 such processes running
[2025-11-24 18:58:54] 2025-11-24 23:58:34,248 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:58:54] 2025-11-24 23:58:34,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:58:54] 2025-11-24 23:58:34,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:58:54] 2025-11-24 23:58:46,956 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:58:54] 2025-11-24 23:58:48,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185693804352)>', '<ExcThread(monitor, started 140185350158080)>']
[2025-11-24 18:58:54] 2025-11-24 23:58:49,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:58:54] 2025-11-24 23:58:49,339 | INFO     | [monitor] control thread has ended
[2025-11-24 18:58:54] 2025-11-24 23:58:53,606 | INFO     | all workflow threads have been joined
[2025-11-24 18:58:54] 2025-11-24 23:58:53,606 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:58:54] 2025-11-24 23:58:53,606 | INFO     | traces error code: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:53,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:58:54] 2025-11-24 23:58:53,956 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:58:54] 2025-11-24 23:58:53,959 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:58:54] 2025-11-24 23:58:53,961 [wrapper] pilotpid: 2879637
[2025-11-24 18:58:54] 2025-11-24 23:58:53,963 [wrapper] Pilot exit status: 0
[2025-11-24 18:58:54] 2025-11-24 23:58:53,977 [wrapper] pandaids: 6891565081
[2025-11-24 18:58:54] 2025-11-24 23:58:54,025 [wrapper] cleanup supervisor_pilot 2160814 2879638
[2025-11-24 18:58:54] 2025-11-24 23:58:54,028 [wrapper] Test setup, not cleaning
[2025-11-24 18:58:54] 2025-11-24 23:58:54,037 [wrapper] apfmon messages muted
[2025-11-24 18:58:54] 2025-11-24 23:58:54,050 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:58:54] 2025-11-24 23:58:54,052 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:58:54]  *** Error codes and diagnostics ***
[2025-11-24 18:58:54]     "exeErrorCode": 0,
[2025-11-24 18:58:54]     "exeErrorDiag": "",
[2025-11-24 18:58:54]     "pilotErrorCode": 0,
[2025-11-24 18:58:54]     "pilotErrorDiag": "",
[2025-11-24 18:58:54]  *** Listing of results directory ***
[2025-11-24 18:58:54] total 1344044
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:29 queuedata.json
[2025-11-24 18:58:54] -rwx------. 1 boincer umatlas     36292 Nov 18 10:30 runpilot2-wrapper.sh
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:58:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:02 run_atlas
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:02 job.xml
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas 410886699 Nov 23 00:02 EVNT.47493065._000130.pool.root.1
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas     15120 Nov 23 00:02 start_atlas.sh
[2025-11-24 18:58:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:02 shared
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:02 input.tar.gz
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:02 boinc_lockfile
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas      2773 Nov 23 00:02 pandaJob.out
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 18:58:54] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas       534 Nov 24 18:38 boinc_task_state.xml
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas 917078926 Nov 24 18:56 HITS.47493068._001298.pool.root.1
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas      1070 Nov 24 18:57 memory_monitor_summary.json
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas   1516227 Nov 24 18:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas   3316267 Nov 24 18:57 log.47493068._001298.job.log.tgz.1
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas      8636 Nov 24 18:58 heartbeat.json
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas        95 Nov 24 18:58 pilot_heartbeat.json
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas      6662 Nov 24 18:58 init_data.xml
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas        30 Nov 24 18:58 wrapper_checkpoint.txt
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas      4823 Nov 24 18:58 pilotlog.txt
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas  18891857 Nov 24 18:58 log.47493068._001298.job.log.1
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 18:58 boinc_mmap_file
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas       353 Nov 24 18:58 output.list
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas       620 Nov 24 18:58 runtime_log
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas  22231040 Nov 24 18:58 result.tar.gz
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas      8700 Nov 24 18:58 runtime_log.err
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas       662 Nov 24 18:58 6IQNDmcqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwHFKDm40Mlgn.diag
[2025-11-24 18:58:54] -rw-r--r--. 1 boincer umatlas     21901 Nov 24 18:58 stderr.txt
[2025-11-24 18:58:54] HITS file was successfully produced:
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas 917078926 Nov 24 18:56 shared/HITS.pool.root.1
[2025-11-24 18:58:54]  *** Contents of shared directory: ***
[2025-11-24 18:58:54] total 1319160
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas 410886699 Nov 23 00:02 ATLAS.root_0
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas     15120 Nov 23 00:02 start_atlas.sh
[2025-11-24 18:58:54] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:02 input.tar.gz
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas 917078926 Nov 24 18:56 HITS.pool.root.1
[2025-11-24 18:58:54] -rw-------. 1 boincer umatlas  22231040 Nov 24 18:58 result.tar.gz
18:58:55 (2872598): run_atlas exited; CPU time 311545.839327
18:58:55 (2872598): called boinc_finish(0)

</stderr_txt>
]]>

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