Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:39:27 (650303): wrapper (7.7.26015): starting
14:39:27 (650303): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 14:39:27] Arguments: --nthreads 12
[2025-11-22 14:39:27] Threads: 12
[2025-11-22 14:39:27] Checking for CVMFS
[2025-11-22 14:39:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:39:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:39:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:39:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:39:28] 2.11.5.0 1503928 22949 124748 153187 3 293 45039747 45568000 21019 130560 0 217078358 99.784 144576370 30475 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-22 14:39:28] CVMFS is ok
[2025-11-22 14:39:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:39:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:39:28] Further information can be found at the LHC@home message board.
[2025-11-22 14:39:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:39:28] Checking for apptainer binary...
[2025-11-22 14:39:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 14:39:28] Running /usr/bin/apptainer --version
[2025-11-22 14:39:28] apptainer version 1.4.1-1.el9
[2025-11-22 14:39:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:39:28] wns0063.triumf.lcg
[2025-11-22 14:39:28] apptainer works
[2025-11-22 14:39:28] Set ATHENA_PROC_NUMBER=12
[2025-11-22 14:39:28] Set ATHENA_CORE_NUMBER=12
[2025-11-22 14:39:28] Starting ATLAS job with PandaID=6895340051
[2025-11-22 14:39:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:44:57]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | WARNING  | wrong length of table data, x=[1763851230.0, 1763851291.0], y=[1396.0, 375423.0] (must be same and length>=4)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . Timing measurements:
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . get job = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . initial setup = 2 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload setup = 10 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . stage-in = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload execution = 106 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . stage-out = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . log creation = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895340051/pilotlog.txt
[2025-11-22 14:44:57] 2025-11-22 22:44:15,795 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 14:44:57] - Log from pilotlog.txt -
[2025-11-22 14:44:57] 2025-11-22 22:44:15,780 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895340051/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | INFO     | extracted standard info from prmon json
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | WARNING  | wrong length of table data, x=[1763851230.0, 1763851291.0], y=[1396.0, 375423.0] (must be same and length>=4)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . Timing measurements:
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . get job = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . initial setup = 2 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload setup = 10 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . stage-in = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload execution = 106 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . stage-out = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . log creation = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895340051/pilotlog.txt
[2025-11-22 14:44:57] 2025-11-22 22:44:15,795 | WARNING  | 
[2025-11-22 14:44:57] [begin log extracts]
[2025-11-22 14:44:57] - Log from pilotlog.txt -
[2025-11-22 14:44:57] 2025-11-22 22:44:15,780 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895340051/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | INFO     | extracted standard info from prmon json
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 14:44:57] 2025-11-22 22:44:15,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | WARNING  | wrong length of table data, x=[1763851230.0, 1763851291.0], y=[1396.0, 375423.0] (must be same and length>=4)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | could have reported an average CPU frequency of 2671 MHz (4 samples)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . Timing measurements:
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . get job = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . initial setup = 2 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload setup = 10 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . stage-in = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,782 | INFO     | . payload execution = 106 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . stage-out = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | . log creation = 0 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | ..............................
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 14:44:57] 2025-11-22 22:44:15,783 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895340051/pilotlog.txt
[2025-11-22 14:44:57] [end log extracts]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,795 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,796 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 14:44:57] 2025-11-22 22:44:15,848 | INFO     | 
[2025-11-22 14:44:57] 2025-11-22 22:44:15,848 | INFO     | job summary report
[2025-11-22 14:44:57] 2025-11-22 22:44:15,848 | INFO     | --------------------------------------------------
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | PanDA job id: 6895340051
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | task id: 47556137
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 14:42:03,019 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | pilot state: failed 
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | transexitcode: 65
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | exeerrorcode: 65
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | exitcode: 65
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | cpuconsumptiontime: 44 s
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | nevents: 0
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | neventsw: 0
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | pid: 660771
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | pgrp: 660771
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | corecount: 12
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | event service: False
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | sizes: {0: 2298702, 7: 2298964, 11: 2298992, 120: 2324388, 122: 2328706, 246: 2328844}
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | --------------------------------------------------
[2025-11-22 14:44:57] 2025-11-22 22:44:15,849 | INFO     | 
[2025-11-22 14:44:57] 2025-11-22 22:44:15,850 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | job 6895340051 has completed (purged errors)
[2025-11-22 14:44:57] 2025-11-22 22:44:15,866 | INFO     | overall cleanup function is called
[2025-11-22 14:44:57] 2025-11-22 22:44:16,879 | INFO     | --- collectZombieJob: --- 10, [660771]
[2025-11-22 14:44:57] 2025-11-22 22:44:16,879 | INFO     | zombie collector waiting for pid 660771
[2025-11-22 14:44:57] 2025-11-22 22:44:16,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:44:57] 2025-11-22 22:44:16,879 | INFO     | collected zombie processes
[2025-11-22 14:44:57] 2025-11-22 22:44:16,879 | INFO     | will attempt to kill all subprocesses of pid=660771
[2025-11-22 14:44:57] 2025-11-22 22:44:17,146 | INFO     | process IDs to be killed: [660771] (in reverse order)
[2025-11-22 14:44:57] 2025-11-22 22:44:17,222 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:44:57] 2025-11-22 22:44:17,223 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:44:57] 2025-11-22 22:44:17,231 | INFO     | did not find any defunct processes belonging to 660771
[2025-11-22 14:44:57] 2025-11-22 22:44:17,240 | INFO     | did not find any defunct processes belonging to 660771
[2025-11-22 14:44:57] 2025-11-22 22:44:17,240 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:44:57] 2025-11-22 22:44:17,240 | INFO     | ready for new job
[2025-11-22 14:44:57] 2025-11-22 22:44:17,241 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:44:57] 2025-11-22 22:44:17,242 | INFO     | ***************************************
[2025-11-22 14:44:57] 2025-11-22 22:44:17,242 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:44:57] 2025-11-22 22:44:17,242 | INFO     | ***************************************
[2025-11-22 14:44:57] 2025-11-22 22:44:17,242 | INFO     | 
[2025-11-22 14:44:57] 2025-11-22 22:44:17,244 | INFO     | architecture information:
[2025-11-22 14:44:57] 2025-11-22 22:44:17,244 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:44:57] 2025-11-22 22:44:17,256 | INFO     | cat /etc/os-release:
[2025-11-22 14:44:57] NAME="CentOS Linux"
[2025-11-22 14:44:57] VERSION="7 (Core)"
[2025-11-22 14:44:57] ID="centos"
[2025-11-22 14:44:57] ID_LIKE="rhel fedora"
[2025-11-22 14:44:57] VERSION_ID="7"
[2025-11-22 14:44:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:44:57] ANSI_COLOR="0;31"
[2025-11-22 14:44:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:44:57] HOME_URL="https://www.centos.org/"
[2025-11-22 14:44:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:44:57] 
[2025-11-22 14:44:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:44:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:44:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:44:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:44:57] 
[2025-11-22 14:44:57] 2025-11-22 22:44:17,256 | INFO     | ***************************************
[2025-11-22 14:44:57] 2025-11-22 22:44:17,760 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 14:44:57] 2025-11-22 22:44:17,822 | INFO     | sufficient remaining disk space (1359243902976 B)
[2025-11-22 14:44:57] 2025-11-22 22:44:17,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:44:57] 2025-11-22 22:44:17,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:44:57] 2025-11-22 22:44:17,822 | INFO     | update_server=False
[2025-11-22 14:44:57] 2025-11-22 22:44:17,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:44:57] 2025-11-22 22:44:17,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:44:57] 2025-11-22 22:44:17,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:44:57] 2025-11-22 22:44:17,826 | INFO     | aborting loop
[2025-11-22 14:44:57] 2025-11-22 22:44:17,866 | INFO     | all payload control threads have been joined
[2025-11-22 14:44:57] 2025-11-22 22:44:18,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:44:57] 2025-11-22 22:44:18,585 | INFO     | all data control threads have been joined
[2025-11-22 14:44:57] 2025-11-22 22:44:18,832 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:18,832 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:18,832 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:18,843 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:18,872 | INFO     | [payload] control thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,138 | INFO     | all job control threads have been joined
[2025-11-22 14:44:57] 2025-11-22 22:44:19,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,443 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,564 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,591 | INFO     | [data] control thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,890 | INFO     | [job] validate thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:19,917 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:20,079 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:20,086 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:20,145 | INFO     | [job] control thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:20,163 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:20,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:44:57] 2025-11-22 22:44:24,222 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:44:57] 2025-11-22 22:44:47,385 | INFO     | PID=654038 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 14:44:57] 2025-11-22 22:44:47,385 | INFO     | .. there are 35 such processes running
[2025-11-22 14:44:57] 2025-11-22 22:44:47,385 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:44:57] 2025-11-22 22:44:47,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:44:57] 2025-11-22 22:44:47,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:44:57] 2025-11-22 22:44:50,537 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:44:57] 2025-11-22 22:44:51,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673326831424)>', '<ExcThread(monitor, started 140672619226880)>']
[2025-11-22 14:44:57] 2025-11-22 22:44:52,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:44:57] 2025-11-22 22:44:52,415 | INFO     | [monitor] control thread has ended
[2025-11-22 14:44:57] 2025-11-22 22:44:56,933 | INFO     | all workflow threads have been joined
[2025-11-22 14:44:57] 2025-11-22 22:44:56,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:44:57] 2025-11-22 22:44:56,934 | INFO     | traces error code: 0
[2025-11-22 14:44:57] 2025-11-22 22:44:56,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:44:57] 2025-11-22 22:44:57,057 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:44:57] 2025-11-22 22:44:57,059 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:44:57] 2025-11-22 22:44:57,061 [wrapper] pilotpid: 654038
[2025-11-22 14:44:57] 2025-11-22 22:44:57,063 [wrapper] Pilot exit status: 0
[2025-11-22 14:44:57] 2025-11-22 22:44:57,094 [wrapper] pandaids: 6895340051
[2025-11-22 14:44:57] 2025-11-22 22:44:57,141 [wrapper] cleanup supervisor_pilot  654044 654039
[2025-11-22 14:44:57] 2025-11-22 22:44:57,144 [wrapper] Test setup, not cleaning
[2025-11-22 14:44:57] 2025-11-22 22:44:57,146 [wrapper] apfmon messages muted
[2025-11-22 14:44:57] 2025-11-22 22:44:57,148 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:44:57] 2025-11-22 22:44:57,150 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:44:57]  *** Error codes and diagnostics ***
[2025-11-22 14:44:57]     "exeErrorCode": 65,
[2025-11-22 14:44:57]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 14:44:57]     "pilotErrorCode": 1305,
[2025-11-22 14:44:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 14:44:57]  *** Listing of results directory ***
[2025-11-22 14:44:57] total 403524
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc    576529 Nov 22 04:20 pilot3.tar.gz
[2025-11-22 14:44:57] -rwx------. 1 boinc boinc     36292 Nov 22 04:28 runpilot2-wrapper.sh
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc      5112 Nov 22 04:28 queuedata.json
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc       100 Nov 22 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:44:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 14:39 run_atlas
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc       105 Nov 22 14:39 job.xml
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc 408986791 Nov 22 14:39 EVNT.47483658._000369.pool.root.1
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc      6595 Nov 22 14:39 init_data.xml
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc     15847 Nov 22 14:39 start_atlas.sh
[2025-11-22 14:44:57] drwxrwx--x. 2 boinc boinc      4096 Nov 22 14:39 shared
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc    590098 Nov 22 14:39 input.tar.gz
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc         0 Nov 22 14:39 boinc_lockfile
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc      2784 Nov 22 14:39 pandaJob.out
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc    989784 Nov 22 14:39 agis_schedconf.cvmfs.json
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc   1526164 Nov 22 14:39 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:44:57] drwx------. 5 boinc boinc      4096 Nov 22 14:39 pilot3
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc       525 Nov 22 14:41 boinc_task_state.xml
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc       991 Nov 22 14:42 memory_monitor_summary.json
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc     48379 Nov 22 14:42 log.47556137._003654.job.log.tgz.1
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc        95 Nov 22 14:43 pilot_heartbeat.json
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc     10335 Nov 22 14:44 heartbeat.json
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc        23 Nov 22 14:44 wrapper_checkpoint.txt
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc      4822 Nov 22 14:44 pilotlog.txt
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc    100061 Nov 22 14:44 log.47556137._003654.job.log.1
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc       186 Nov 22 14:44 output.list
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc       620 Nov 22 14:44 runtime_log
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc    174080 Nov 22 14:44 result.tar.gz
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc      8636 Nov 22 14:44 runtime_log.err
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc       646 Nov 22 14:44 RmOKDmXu1g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmK9JKDmZV8iNm.diag
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc     22449 Nov 22 14:44 stderr.txt
[2025-11-22 14:44:57] -rw-r--r--. 1 boinc boinc      8192 Nov 22 14:44 boinc_mmap_file
[2025-11-22 14:44:57] No HITS result produced
[2025-11-22 14:44:57]  *** Contents of shared directory: ***
[2025-11-22 14:44:57] total 400176
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc 408986791 Nov 22 14:39 ATLAS.root_0
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc     15847 Nov 22 14:39 start_atlas.sh
[2025-11-22 14:44:57] -rw-r--r--. 2 boinc boinc    590098 Nov 22 14:39 input.tar.gz
[2025-11-22 14:44:57] -rw-------. 1 boinc boinc    174080 Nov 22 14:44 result.tar.gz
14:44:58 (650303): run_atlas exited; CPU time 45.193008
14:44:58 (650303): called boinc_finish(0)

</stderr_txt>
]]>

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