Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:01:06 (3629457): wrapper (7.7.26015): starting
22:01:06 (3629457): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:01:06] Arguments: --nthreads 8
[2025-11-22 22:01:06] Threads: 8
[2025-11-22 22:01:06] Checking for CVMFS
[2025-11-22 22:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:01:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:01:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:01:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:01:08] 2.13.3.0 11066 25164 352416 153193 3 789 30329402 32935937 17746 16776704 0 70272684 99.437 97184643 38206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 22:01:08] CVMFS is ok
[2025-11-22 22:01:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 22:01:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 22:01:08] Further information can be found at the LHC@home message board.
[2025-11-22 22:01:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:01:08] Checking for apptainer binary...
[2025-11-22 22:01:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:01:09] Running /usr/bin/apptainer --version
[2025-11-22 22:01:09] apptainer version 1.4.4-1.el9
[2025-11-22 22:01:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:01:11] c6-1-24-4.aglt2.org
[2025-11-22 22:01:11] apptainer works
[2025-11-22 22:01:11] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:01:11] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:01:11] Starting ATLAS job with PandaID=6895324630
[2025-11-22 22:01:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:24:41]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:24:41] 2025-11-24 23:23:48,253 | INFO     | time since job start (159661s) is within the limit (172800.0s)
[2025-11-24 18:24:41] 2025-11-24 23:23:49,231 | INFO     | monitor loop #1603: job 0:6895324630 is in state 'finished'
[2025-11-24 18:24:41] 2025-11-24 23:23:49,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:24:41] 2025-11-24 23:23:50,260 | INFO     | time since job start (159663s) is within the limit (172800.0s)
[2025-11-24 18:24:41] 2025-11-24 23:23:51,736 | INFO     | monitor loop #1604: job 0:6895324630 is in state 'finished'
[2025-11-24 18:24:41] 2025-11-24 23:23:51,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:24:41] 2025-11-24 23:23:52,279 | INFO     | time since job start (159665s) is within the limit (172800.0s)
[2025-11-24 18:24:41] 2025-11-24 23:23:54,283 | INFO     | monitor loop #1605: job 0:6895324630 is in state 'finished'
[2025-11-24 18:24:41] 2025-11-24 23:23:54,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:24:41] 2025-11-24 23:23:54,287 | INFO     | time since job start (159667s) is within the limit (172800.0s)
[2025-11-24 18:24:41] 2025-11-24 23:23:55,808 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 18:24:41] 2025-11-24 23:23:55,853 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2971.8796785714285
[2025-11-24 18:24:41] 2025-11-24 23:23:55,942 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895324630/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:24:41] 2025-11-24 23:23:55,967 | INFO     | extracted standard info from prmon json
[2025-11-24 18:24:41] 2025-11-24 23:23:55,967 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:24:41] 2025-11-24 23:23:55,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:24:41] 2025-11-24 23:23:56,483 | INFO     | time since job start (159669s) is within the limit (172800.0s)
[2025-11-24 18:24:41] 2025-11-24 23:23:56,487 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:24:41] 2025-11-24 23:23:56,532 | INFO     | sum of square deviations: 5538203039355.949
[2025-11-24 18:24:41] 2025-11-24 23:23:56,908 | INFO     | sum of deviations: 14969197457813.248
[2025-11-24 18:24:41] 2025-11-24 23:23:56,908 | INFO     | mean x: 1763946859.7138486
[2025-11-24 18:24:41] 2025-11-24 23:23:56,908 | INFO     | mean y: 2971632.619357307
[2025-11-24 18:24:41] 2025-11-24 23:23:56,909 | INFO     | intersect: -4764796659.822462
[2025-11-24 18:24:41] 2025-11-24 23:23:56,915 | INFO     | chi2: 19.870101819523537
[2025-11-24 18:24:41] 2025-11-24 23:23:56,919 | INFO     | sum of square deviations: 5506485978047.286
[2025-11-24 18:24:41] 2025-11-24 23:23:57,113 | INFO     | sum of deviations: 15860342405743.205
[2025-11-24 18:24:41] 2025-11-24 23:23:57,114 | INFO     | mean x: 1763946707.2238405
[2025-11-24 18:24:41] 2025-11-24 23:23:57,114 | INFO     | mean y: 2975917.1023380607
[2025-11-24 18:24:41] 2025-11-24 23:23:57,114 | INFO     | intersect: -5077723257.214732
[2025-11-24 18:24:41] 2025-11-24 23:23:57,116 | INFO     | chi2: 16.846719630132256
[2025-11-24 18:24:41] 2025-11-24 23:23:57,117 | INFO     | current chi2=16.846719630132256 (change=15.215735766490294 %)
[2025-11-24 18:24:41] 2025-11-24 23:23:57,117 | INFO     | right removable region: 2608
[2025-11-24 18:24:41] 2025-11-24 23:23:57,119 | INFO     | sum of square deviations: 5506477664357.27
[2025-11-24 18:24:41] 2025-11-24 23:23:57,201 | INFO     | monitor loop #1606: job 0:6895324630 is in state 'finished'
[2025-11-24 18:24:41] 2025-11-24 23:23:57,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:24:41] 2025-11-24 23:23:57,339 | INFO     | sum of deviations: 13850689684965.562
[2025-11-24 18:24:41] 2025-11-24 23:23:57,340 | INFO     | mean x: 1763947012.2238405
[2025-11-24 18:24:41] 2025-11-24 23:23:57,340 | INFO     | mean y: 2977009.25756995
[2025-11-24 18:24:41] 2025-11-24 23:23:57,340 | INFO     | intersect: -4433957847.516488
[2025-11-24 18:24:41] 2025-11-24 23:23:57,348 | INFO     | chi2: 15.421396699497485
[2025-11-24 18:24:41] 2025-11-24 23:23:57,353 | INFO     | current chi2=15.421396699497485 (change=22.388939726795655 %)
[2025-11-24 18:24:41] 2025-11-24 23:23:57,353 | INFO     | left removable region: 10
[2025-11-24 18:24:41] 2025-11-24 23:23:57,355 | INFO     | sum of square deviations: 5437118644254.323
[2025-11-24 18:24:41] 2025-11-24 23:23:57,824 | INFO     | sum of deviations: 13972597263487.924
[2025-11-24 18:24:41] 2025-11-24 23:23:57,825 | INFO     | mean x: 1763946981.7459583
[2025-11-24 18:24:41] 2025-11-24 23:23:57,825 | INFO     | mean y: 2986653.110469592
[2025-11-24 18:24:41] 2025-11-24 23:23:57,825 | INFO     | intersect: -4530098310.214177
[2025-11-24 18:24:41] 2025-11-24 23:23:57,829 | INFO     | chi2: 8.821331956824205
[2025-11-24 18:24:41] 2025-11-24 23:23:57,849 | INFO     | current memory leak: 2.57 B/s (using 2598 data points, chi2=8.82)
[2025-11-24 18:24:41] 2025-11-24 23:23:57,870 | INFO     | could have reported an average CPU frequency of 2874 MHz (21 samples)
[2025-11-24 18:24:41] 2025-11-24 23:23:57,870 | INFO     | ..............................
[2025-11-24 18:24:41] 2025-11-24 23:23:57,870 | INFO     | . Timing measurements:
[2025-11-24 18:24:41] 2025-11-24 23:23:57,870 | INFO     | . get job = 0 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,870 | INFO     | . initial setup = 5 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | . payload setup = 62 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | . stage-in = 0 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | . payload execution = 159480 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | . stage-out = 13 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | . log creation = 2 s
[2025-11-24 18:24:41] 2025-11-24 23:23:57,871 | INFO     | ..............................
[2025-11-24 18:24:41] 2025-11-24 23:23:58,349 | INFO     | 
[2025-11-24 18:24:41] 2025-11-24 23:23:58,350 | INFO     | job summary report
[2025-11-24 18:24:41] 2025-11-24 23:23:58,350 | INFO     | --------------------------------------------------
[2025-11-24 18:24:41] 2025-11-24 23:23:58,351 | INFO     | PanDA job id: 6895324630
[2025-11-24 18:24:41] 2025-11-24 23:23:58,351 | INFO     | task id: 47556149
[2025-11-24 18:24:41] 2025-11-24 23:23:58,351 | INFO     | errors: (none)
[2025-11-24 18:24:41] 2025-11-24 23:23:58,351 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:24:41] 2025-11-24 23:23:58,351 | INFO     | pilot state: finished 
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | transexitcode: 0
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | exeerrorcode: 0
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | exeerrordiag: 
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | exitcode: 0
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | exitmsg: OK
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | cpuconsumptiontime: 242767 s
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | nevents: 1000
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | neventsw: 0
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | pid: 3646769
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | pgrp: 3646769
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | corecount: 8
[2025-11-24 18:24:41] 2025-11-24 23:23:58,352 | INFO     | event service: False
[2025-11-24 18:24:41] 2025-11-24 23:23:58,353 | INFO     | sizes: {0: 2298632, 1: 2298831, 2: 2298831, 13: 2298859, 24: 2298915, 36: 2298943, 41: 2299361, 47: 2299389, 159549: 2338355, 159562: 2348140, 159563: 2348196, 159
[2025-11-24 18:24:41] 2025-11-24 23:23:58,353 | INFO     | --------------------------------------------------
[2025-11-24 18:24:41] 2025-11-24 23:23:58,353 | INFO     | 
[2025-11-24 18:24:41] 2025-11-24 23:23:58,353 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,490 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:24:41] 2025-11-24 23:23:58,491 | INFO     | job 6895324630 has completed (purged errors)
[2025-11-24 18:24:41] 2025-11-24 23:23:58,491 | INFO     | overall cleanup function is called
[2025-11-24 18:24:41] 2025-11-24 23:23:59,547 | INFO     | --- collectZombieJob: --- 10, [3646769]
[2025-11-24 18:24:41] 2025-11-24 23:23:59,547 | INFO     | zombie collector waiting for pid 3646769
[2025-11-24 18:24:41] 2025-11-24 23:23:59,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:24:41] 2025-11-24 23:23:59,548 | INFO     | collected zombie processes
[2025-11-24 18:24:41] 2025-11-24 23:23:59,548 | INFO     | will attempt to kill all subprocesses of pid=3646769
[2025-11-24 18:24:41] 2025-11-24 23:23:59,650 | INFO     | PID=3636363 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:24:41] 2025-11-24 23:23:59,651 | INFO     | .. there are 31 such processes running
[2025-11-24 18:24:41] 2025-11-24 23:24:00,681 | INFO     | process IDs to be killed: [3646769] (in reverse order)
[2025-11-24 18:24:41] 2025-11-24 23:24:01,143 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:24:41] 2025-11-24 23:24:01,143 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:24:41] 2025-11-24 23:24:01,184 | INFO     | did not find any defunct processes belonging to 3646769
[2025-11-24 18:24:41] 2025-11-24 23:24:01,223 | INFO     | did not find any defunct processes belonging to 3646769
[2025-11-24 18:24:41] 2025-11-24 23:24:01,229 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:24:41] 2025-11-24 23:24:01,229 | INFO     | ready for new job
[2025-11-24 18:24:41] 2025-11-24 23:24:01,229 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:24:41] 2025-11-24 23:24:01,245 | INFO     | ***************************************
[2025-11-24 18:24:41] 2025-11-24 23:24:01,246 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:24:41] 2025-11-24 23:24:01,246 | INFO     | ***************************************
[2025-11-24 18:24:41] 2025-11-24 23:24:01,246 | INFO     | 
[2025-11-24 18:24:41] 2025-11-24 23:24:01,254 | INFO     | architecture information:
[2025-11-24 18:24:41] 2025-11-24 23:24:01,262 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:24:41] 2025-11-24 23:24:01,420 | INFO     | cat /etc/os-release:
[2025-11-24 18:24:41] NAME="CentOS Linux"
[2025-11-24 18:24:41] VERSION="7 (Core)"
[2025-11-24 18:24:41] ID="centos"
[2025-11-24 18:24:41] ID_LIKE="rhel fedora"
[2025-11-24 18:24:41] VERSION_ID="7"
[2025-11-24 18:24:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:24:41] ANSI_COLOR="0;31"
[2025-11-24 18:24:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:24:41] HOME_URL="https://www.centos.org/"
[2025-11-24 18:24:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:24:41] 
[2025-11-24 18:24:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:24:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:24:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:24:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:24:41] 
[2025-11-24 18:24:41] 2025-11-24 23:24:01,420 | INFO     | ***************************************
[2025-11-24 18:24:41] 2025-11-24 23:24:01,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 18:24:41] 2025-11-24 23:24:01,991 | INFO     | sufficient remaining disk space (72694628352 B)
[2025-11-24 18:24:41] 2025-11-24 23:24:01,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:24:41] 2025-11-24 23:24:01,992 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:24:41] 2025-11-24 23:24:01,992 | INFO     | update_server=False
[2025-11-24 18:24:41] 2025-11-24 23:24:01,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:24:41] 2025-11-24 23:24:02,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:24:41] 2025-11-24 23:24:02,220 | INFO     | all job control threads have been joined
[2025-11-24 18:24:41] 2025-11-24 23:24:02,229 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 18:24:41] 2025-11-24 23:24:02,230 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 18:24:41] 2025-11-24 23:24:02,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:24:41] 2025-11-24 23:24:02,230 | INFO     | will abort loop
[2025-11-24 18:24:41] 2025-11-24 23:24:02,283 | INFO     | all payload control threads have been joined
[2025-11-24 18:24:41] 2025-11-24 23:24:02,998 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,089 | INFO     | all data control threads have been joined
[2025-11-24 18:24:41] 2025-11-24 23:24:03,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:24:41] 2025-11-24 23:24:03,226 | INFO     | [job] control thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,265 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,289 | INFO     | [payload] control thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:24:41] 2025-11-24 23:24:03,417 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,423 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,432 | INFO     | [job] validate thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:03,941 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:04,130 | INFO     | [data] control thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:04,320 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:04,337 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:04,344 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:04,560 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:05,179 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:06,144 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:24:41] 2025-11-24 23:24:30,693 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:24:41] 2025-11-24 23:24:32,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825946830656)>', '<ExcThread(monitor, started 139825453713152)>']
[2025-11-24 18:24:41] 2025-11-24 23:24:37,800 | INFO     | all workflow threads have been joined
[2025-11-24 18:24:41] 2025-11-24 23:24:37,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:24:41] 2025-11-24 23:24:37,801 | INFO     | traces error code: 0
[2025-11-24 18:24:41] 2025-11-24 23:24:37,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:24:41] 2025-11-24 23:24:40,529 | INFO     | PID=3636363 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | INFO     | .. there are 31 such processes running
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:24:41] 2025-11-24 23:24:40,535 | INFO     | [monitor] control thread has ended
[2025-11-24 18:24:41] 2025-11-24 23:24:41,034 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:24:41] 2025-11-24 23:24:41,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:24:41] 2025-11-24 23:24:41,040 [wrapper] pilotpid: 3636363
[2025-11-24 18:24:41] 2025-11-24 23:24:41,045 [wrapper] Pilot exit status: 0
[2025-11-24 18:24:41] 2025-11-24 23:24:41,060 [wrapper] pandaids: 6895324630
[2025-11-24 18:24:41] 2025-11-24 23:24:41,150 [wrapper] cleanup supervisor_pilot 2913290 3636364
[2025-11-24 18:24:41] 2025-11-24 23:24:41,154 [wrapper] Test setup, not cleaning
[2025-11-24 18:24:41] 2025-11-24 23:24:41,169 [wrapper] apfmon messages muted
[2025-11-24 18:24:41] 2025-11-24 23:24:41,188 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:24:41] 2025-11-24 23:24:41,192 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:24:41]  *** Error codes and diagnostics ***
[2025-11-24 18:24:41]     "exeErrorCode": 0,
[2025-11-24 18:24:41]     "exeErrorDiag": "",
[2025-11-24 18:24:41]     "pilotErrorCode": 0,
[2025-11-24 18:24:41]     "pilotErrorDiag": "",
[2025-11-24 18:24:41]  *** Listing of results directory ***
[2025-11-24 18:24:41] total 1326024
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 09:24 queuedata.json
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 09:24 pilot3.tar.gz
[2025-11-24 18:24:41] -rwx------. 1 boincer umatlas     36292 Nov 21 09:25 runpilot2-wrapper.sh
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas       100 Nov 22 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:24:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 22:01 run_atlas
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas       105 Nov 22 22:01 job.xml
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas 407106286 Nov 22 22:01 EVNT.47483658._001019.pool.root.1
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:01 start_atlas.sh
[2025-11-24 18:24:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 22:01 shared
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 22:01 input.tar.gz
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas         0 Nov 22 22:01 boinc_lockfile
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas      2784 Nov 22 22:01 pandaJob.out
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas        57 Nov 22 22:01 setup.sh.local
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas    989784 Nov 22 22:02 agis_schedconf.cvmfs.json
[2025-11-24 18:24:41] drwx------. 5 boincer umatlas      4096 Nov 22 22:02 pilot3
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas       534 Nov 24 18:02 boinc_task_state.xml
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas      6846 Nov 24 18:21 init_data.xml
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas 918932038 Nov 24 18:22 HITS.47556149._000052.pool.root.1
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas      1059 Nov 24 18:23 memory_monitor_summary.json
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas   1516227 Nov 24 18:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas   2557894 Nov 24 18:23 log.47556149._000052.job.log.tgz.1
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas        95 Nov 24 18:23 pilot_heartbeat.json
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas      8616 Nov 24 18:23 heartbeat.json
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 18:24 boinc_mmap_file
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas        30 Nov 24 18:24 wrapper_checkpoint.txt
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas       823 Nov 24 18:24 pilotlog.txt
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas  11393382 Nov 24 18:24 log.47556149._000052.job.log.1
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas       353 Nov 24 18:24 output.list
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas       620 Nov 24 18:24 runtime_log
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas  13967360 Nov 24 18:24 result.tar.gz
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas      9349 Nov 24 18:24 runtime_log.err
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas       664 Nov 24 18:24 KVoKDm2Fhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4TJKDmvdvsBn.diag
[2025-11-24 18:24:41] -rw-r--r--. 1 boincer umatlas     21876 Nov 24 18:24 stderr.txt
[2025-11-24 18:24:41] HITS file was successfully produced:
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas 918932038 Nov 24 18:22 shared/HITS.pool.root.1
[2025-11-24 18:24:41]  *** Contents of shared directory: ***
[2025-11-24 18:24:41] total 1309204
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas 407106286 Nov 22 22:01 ATLAS.root_0
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 22:01 start_atlas.sh
[2025-11-24 18:24:41] -rw-r--r--. 2 boincer umatlas    590096 Nov 22 22:01 input.tar.gz
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas 918932038 Nov 24 18:22 HITS.pool.root.1
[2025-11-24 18:24:41] -rw-------. 1 boincer umatlas  13967360 Nov 24 18:24 result.tar.gz
18:24:43 (3629457): run_atlas exited; CPU time 242713.665541
18:24:43 (3629457): called boinc_finish(0)

</stderr_txt>
]]>

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