Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:00:06 (26320): wrapper (7.7.26015): starting
14:00:06 (26320): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 14:00:06] Arguments: --nthreads 8
[2025-11-25 14:00:06] Threads: 8
[2025-11-25 14:00:06] Checking for CVMFS
[2025-11-25 14:00:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:00:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:00:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:00:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:00:09] 2.11.2.0 27863 283981 137060 153283 2 84 19005680 25165824 4632 130560 9 144850778 99.877 82172781 3728 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 14:00:09] CVMFS is ok
[2025-11-25 14:00:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:00:09] Checking for apptainer binary...
[2025-11-25 14:00:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 14:00:09] Running /usr/bin/apptainer --version
[2025-11-25 14:00:09] apptainer version 1.3.2-1.el7
[2025-11-25 14:00:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:00:29] cg-vwn495.simple-grid.lan
[2025-11-25 14:00:29] apptainer works
[2025-11-25 14:00:29] Set ATHENA_PROC_NUMBER=8
[2025-11-25 14:00:29] Set ATHENA_CORE_NUMBER=8
[2025-11-25 14:00:29] Starting ATLAS job with PandaID=6895333063
[2025-11-25 14:00:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:56:51]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:56:51] 2025-11-26 11:56:06,091 | INFO     | monitor loop #5579: job 0:6895333063 is in state 'finished'
[2025-11-26 12:56:51] 2025-11-26 11:56:06,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:56:51] 2025-11-26 11:56:07,885 | INFO     | time since job start (82323s) is within the limit (172800.0s)
[2025-11-26 12:56:51] 2025-11-26 11:56:08,607 | INFO     | monitor loop #5580: job 0:6895333063 is in state 'finished'
[2025-11-26 12:56:51] 2025-11-26 11:56:08,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:56:51] 2025-11-26 11:56:09,892 | INFO     | time since job start (82325s) is within the limit (172800.0s)
[2025-11-26 12:56:51] 2025-11-26 11:56:11,116 | INFO     | monitor loop #5581: job 0:6895333063 is in state 'finished'
[2025-11-26 12:56:51] 2025-11-26 11:56:11,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:56:51] 2025-11-26 11:56:11,155 | INFO     | PID=30163 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 12:56:51] 2025-11-26 11:56:11,155 | INFO     | .. there are 9 such processes running
[2025-11-26 12:56:51] 2025-11-26 11:56:12,156 | INFO     | time since job start (82328s) is within the limit (172800.0s)
[2025-11-26 12:56:51] 2025-11-26 11:56:13,620 | INFO     | monitor loop #5582: job 0:6895333063 is in state 'finished'
[2025-11-26 12:56:51] 2025-11-26 11:56:13,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,171 | INFO     | time since job start (82330s) is within the limit (172800.0s)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,490 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:56:51] 2025-11-26 11:56:14,491 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-26 12:56:51] 2025-11-26 11:56:14,493 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895333063/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,493 | INFO     | extracted standard info from prmon json
[2025-11-26 12:56:51] 2025-11-26 11:56:14,493 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:56:51] 2025-11-26 11:56:14,493 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:56:51] 2025-11-26 11:56:14,516 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:56:51] 2025-11-26 11:56:14,518 | INFO     | sum of square deviations: 746086174751.7878
[2025-11-26 12:56:51] 2025-11-26 11:56:14,599 | INFO     | sum of deviations: 3368053205847.8413
[2025-11-26 12:56:51] 2025-11-26 11:56:14,599 | INFO     | mean x: 1764117220.702985
[2025-11-26 12:56:51] 2025-11-26 11:56:14,599 | INFO     | mean y: 2843004.564925373
[2025-11-26 12:56:51] 2025-11-26 11:56:14,599 | INFO     | intersect: -7960902822.325342
[2025-11-26 12:56:51] 2025-11-26 11:56:14,603 | INFO     | chi2: 20.349422603025076
[2025-11-26 12:56:51] 2025-11-26 11:56:14,605 | INFO     | sum of square deviations: 737766008069.5248
[2025-11-26 12:56:51] 2025-11-26 11:56:14,673 | INFO     | sum of deviations: 3810810826136.651
[2025-11-26 12:56:51] 2025-11-26 11:56:14,674 | INFO     | mean x: 1764117068.2074907
[2025-11-26 12:56:51] 2025-11-26 11:56:14,674 | INFO     | mean y: 2851118.716104869
[2025-11-26 12:56:51] 2025-11-26 11:56:14,674 | INFO     | intersect: -9109409880.795853
[2025-11-26 12:56:51] 2025-11-26 11:56:14,676 | INFO     | chi2: 17.209092488914354
[2025-11-26 12:56:51] 2025-11-26 11:56:14,676 | INFO     | current chi2=17.209092488914354 (change=15.432035470352318 %)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,676 | INFO     | right removable region: 1334
[2025-11-26 12:56:51] 2025-11-26 11:56:14,683 | INFO     | sum of square deviations: 737765024749.5249
[2025-11-26 12:56:51] 2025-11-26 11:56:14,736 | INFO     | sum of deviations: 2794737191122.6514
[2025-11-26 12:56:51] 2025-11-26 11:56:14,736 | INFO     | mean x: 1764117373.2074907
[2025-11-26 12:56:51] 2025-11-26 11:56:14,736 | INFO     | mean y: 2853511.614981273
[2025-11-26 12:56:51] 2025-11-26 11:56:14,737 | INFO     | intersect: -6679822227.970825
[2025-11-26 12:56:51] 2025-11-26 11:56:14,738 | INFO     | chi2: 15.398100083091126
[2025-11-26 12:56:51] 2025-11-26 11:56:14,738 | INFO     | current chi2=15.398100083091126 (change=24.331513559494816 %)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,738 | INFO     | left removable region: 10
[2025-11-26 12:56:51] 2025-11-26 11:56:14,740 | INFO     | sum of square deviations: 719677918820.353
[2025-11-26 12:56:51] 2025-11-26 11:56:14,793 | INFO     | sum of deviations: 2846504411988.1157
[2025-11-26 12:56:51] 2025-11-26 11:56:14,793 | INFO     | mean x: 1764117342.7175226
[2025-11-26 12:56:51] 2025-11-26 11:56:14,793 | INFO     | mean y: 2872769.072507553
[2025-11-26 12:56:51] 2025-11-26 11:56:14,793 | INFO     | intersect: -6974648241.355588
[2025-11-26 12:56:51] 2025-11-26 11:56:14,795 | INFO     | chi2: 7.8441291893883935
[2025-11-26 12:56:51] 2025-11-26 11:56:14,795 | INFO     | current memory leak: 3.96 B/s (using 1324 data points, chi2=7.84)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,796 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-26 12:56:51] 2025-11-26 11:56:14,796 | INFO     | ..............................
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . Timing measurements:
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . get job = 0 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . initial setup = 9 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . payload setup = 168 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . stage-in = 0 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . payload execution = 81869 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . stage-out = 5 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | . log creation = 2 s
[2025-11-26 12:56:51] 2025-11-26 11:56:14,797 | INFO     | ..............................
[2025-11-26 12:56:51] 2025-11-26 11:56:15,329 | INFO     | 
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | job summary report
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | --------------------------------------------------
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | PanDA job id: 6895333063
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | task id: 47556137
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | errors: (none)
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | pilot state: finished 
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | transexitcode: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | exeerrorcode: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:15,330 | INFO     | exeerrordiag: 
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | exitcode: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | exitmsg: OK
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | cpuconsumptiontime: 302934 s
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | nevents: 1000
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | neventsw: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | pid: 4334
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | pgrp: 4334
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | corecount: 8
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | event service: False
[2025-11-26 12:56:51] 2025-11-26 11:56:15,331 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 55: 2284561, 66: 2284589, 77: 2284617, 88: 2285243, 98: 2285243, 82
[2025-11-26 12:56:51] 2025-11-26 11:56:15,332 | INFO     | --------------------------------------------------
[2025-11-26 12:56:51] 2025-11-26 11:56:15,332 | INFO     | 
[2025-11-26 12:56:51] 2025-11-26 11:56:15,332 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-26 12:56:51] 2025-11-26 11:56:15,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | job 6895333063 has completed (purged errors)
[2025-11-26 12:56:51] 2025-11-26 11:56:15,789 | INFO     | overall cleanup function is called
[2025-11-26 12:56:51] 2025-11-26 11:56:16,806 | INFO     | --- collectZombieJob: --- 10, [4334]
[2025-11-26 12:56:51] 2025-11-26 11:56:16,807 | INFO     | zombie collector waiting for pid 4334
[2025-11-26 12:56:51] 2025-11-26 11:56:16,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:56:51] 2025-11-26 11:56:16,807 | INFO     | collected zombie processes
[2025-11-26 12:56:51] 2025-11-26 11:56:16,807 | INFO     | will attempt to kill all subprocesses of pid=4334
[2025-11-26 12:56:51] 2025-11-26 11:56:16,923 | INFO     | process IDs to be killed: [4334] (in reverse order)
[2025-11-26 12:56:51] 2025-11-26 11:56:17,479 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:56:51] 2025-11-26 11:56:17,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:56:51] 2025-11-26 11:56:17,482 | INFO     | did not find any defunct processes belonging to 4334
[2025-11-26 12:56:51] 2025-11-26 11:56:17,485 | INFO     | did not find any defunct processes belonging to 4334
[2025-11-26 12:56:51] 2025-11-26 11:56:17,540 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:56:51] 2025-11-26 11:56:17,540 | INFO     | ready for new job
[2025-11-26 12:56:51] 2025-11-26 11:56:17,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:56:51] 2025-11-26 11:56:17,545 | INFO     | ***************************************
[2025-11-26 12:56:51] 2025-11-26 11:56:17,545 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:56:51] 2025-11-26 11:56:17,545 | INFO     | ***************************************
[2025-11-26 12:56:51] 2025-11-26 11:56:17,545 | INFO     | 
[2025-11-26 12:56:51] 2025-11-26 11:56:17,546 | INFO     | pilot is running in a VM
[2025-11-26 12:56:51] 2025-11-26 11:56:17,546 | INFO     | architecture information:
[2025-11-26 12:56:51] 2025-11-26 11:56:17,557 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:56:51] 2025-11-26 11:56:17,787 | INFO     | cat /etc/os-release:
[2025-11-26 12:56:51] NAME="CentOS Linux"
[2025-11-26 12:56:51] VERSION="7 (Core)"
[2025-11-26 12:56:51] ID="centos"
[2025-11-26 12:56:51] ID_LIKE="rhel fedora"
[2025-11-26 12:56:51] VERSION_ID="7"
[2025-11-26 12:56:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:56:51] ANSI_COLOR="0;31"
[2025-11-26 12:56:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:56:51] HOME_URL="https://www.centos.org/"
[2025-11-26 12:56:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:56:51] 
[2025-11-26 12:56:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:56:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:56:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:56:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:56:51] 
[2025-11-26 12:56:51] 2025-11-26 11:56:17,787 | INFO     | ***************************************
[2025-11-26 12:56:51] 2025-11-26 11:56:18,291 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-26 12:56:51] 2025-11-26 11:56:18,533 | INFO     | sufficient remaining disk space (495508783104 B)
[2025-11-26 12:56:51] 2025-11-26 11:56:18,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:56:51] 2025-11-26 11:56:18,534 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:56:51] 2025-11-26 11:56:18,534 | INFO     | update_server=False
[2025-11-26 12:56:51] 2025-11-26 11:56:18,534 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:56:51] 2025-11-26 11:56:18,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:56:51] 2025-11-26 11:56:18,651 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 12:56:51] 2025-11-26 11:56:18,652 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 12:56:51] 2025-11-26 11:56:18,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:56:51] 2025-11-26 11:56:18,652 | INFO     | will abort loop
[2025-11-26 12:56:51] 2025-11-26 11:56:18,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:56:51] 2025-11-26 11:56:19,525 | INFO     | all data control threads have been joined
[2025-11-26 12:56:51] 2025-11-26 11:56:19,540 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:19,569 | INFO     | all job control threads have been joined
[2025-11-26 12:56:51] 2025-11-26 11:56:19,591 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:19,615 | INFO     | all payload control threads have been joined
[2025-11-26 12:56:51] 2025-11-26 11:56:19,658 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:19,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:19,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:56:51] 2025-11-26 11:56:20,247 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,318 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,531 | INFO     | [data] control thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,567 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,575 | INFO     | [job] control thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,622 | INFO     | [payload] control thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,637 | INFO     | [job] validate thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,940 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:20,982 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:21,132 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:22,550 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:56:51] 2025-11-26 11:56:27,758 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:56:51] 2025-11-26 11:56:28,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665284974400)>', '<ExcThread(monitor, started 140664834598656)>']
[2025-11-26 12:56:51] 2025-11-26 11:56:33,454 | INFO     | all workflow threads have been joined
[2025-11-26 12:56:51] 2025-11-26 11:56:33,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:56:51] 2025-11-26 11:56:33,455 | INFO     | traces error code: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:33,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:56:51] 2025-11-26 11:56:47,352 | INFO     | PID=30163 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 12:56:51] 2025-11-26 11:56:47,352 | INFO     | .. there are 9 such processes running
[2025-11-26 12:56:51] 2025-11-26 11:56:47,353 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:56:51] 2025-11-26 11:56:47,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:56:51] 2025-11-26 11:56:47,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:56:51] 2025-11-26 11:56:47,354 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:56:51] 2025-11-26 11:56:47,354 | INFO     | [monitor] control thread has ended
[2025-11-26 12:56:51] 2025-11-26 11:56:47,586 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:56:51] 2025-11-26 11:56:47,686 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:56:51] 2025-11-26 11:56:47,782 [wrapper] pilotpid: 30163
[2025-11-26 12:56:51] 2025-11-26 11:56:47,911 [wrapper] Pilot exit status: 0
[2025-11-26 12:56:51] 2025-11-26 11:56:48,276 [wrapper] pandaids: 6895333063
[2025-11-26 12:56:51] 2025-11-26 11:56:49,086 [wrapper] cleanup supervisor_pilot  3920 30164
[2025-11-26 12:56:51] 2025-11-26 11:56:49,214 [wrapper] Test setup, not cleaning
[2025-11-26 12:56:51] 2025-11-26 11:56:49,333 [wrapper] apfmon messages muted
[2025-11-26 12:56:51] 2025-11-26 11:56:49,479 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:56:51] 2025-11-26 11:56:49,574 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:56:51]  *** Error codes and diagnostics ***
[2025-11-26 12:56:51]     "exeErrorCode": 0,
[2025-11-26 12:56:51]     "exeErrorDiag": "",
[2025-11-26 12:56:51]     "pilotErrorCode": 0,
[2025-11-26 12:56:51]     "pilotErrorDiag": "",
[2025-11-26 12:56:51]  *** Listing of results directory ***
[2025-11-26 12:56:51] total 1325872
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc    576529 Nov 22 02:07 pilot3.tar.gz
[2025-11-26 12:56:51] -rwx------. 1 boinc boinc     36292 Nov 22 02:10 runpilot2-wrapper.sh
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc      5112 Nov 22 02:10 queuedata.json
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc       100 Nov 25 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:56:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 14:00 run_atlas
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc       105 Nov 25 14:00 job.xml
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc      6392 Nov 25 14:00 init_data.xml
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc 409203963 Nov 25 14:00 EVNT.47483658._000198.pool.root.1
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc     15847 Nov 25 14:00 start_atlas.sh
[2025-11-26 12:56:51] drwxrwx--x. 2 boinc boinc        68 Nov 25 14:00 shared
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc    590099 Nov 25 14:00 input.tar.gz
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc         0 Nov 25 14:00 boinc_lockfile
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc      2785 Nov 25 14:00 pandaJob.out
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc    991909 Nov 25 14:03 agis_schedconf.cvmfs.json
[2025-11-26 12:56:51] drwx------. 5 boinc boinc      4096 Nov 25 14:04 pilot3
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc       533 Nov 26 12:36 boinc_task_state.xml
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc 917714727 Nov 26 12:53 HITS.47556137._001967.pool.root.1
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc      1032 Nov 26 12:54 memory_monitor_summary.json
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc   1516240 Nov 26 12:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc   2445190 Nov 26 12:54 log.47556137._001967.job.log.tgz.1
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc      8628 Nov 26 12:56 heartbeat.json
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc      8192 Nov 26 12:56 boinc_mmap_file
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc        29 Nov 26 12:56 wrapper_checkpoint.txt
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc        95 Nov 26 12:56 pilot_heartbeat.json
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc       820 Nov 26 12:56 pilotlog.txt
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc  10995230 Nov 26 12:56 log.47556137._001967.job.log.1
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc       353 Nov 26 12:56 output.list
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc       620 Nov 26 12:56 runtime_log
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc  13455360 Nov 26 12:56 result.tar.gz
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc       662 Nov 26 12:56 x6RNDmzJrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjpJKDmksdKVm.diag
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc      8833 Nov 26 12:56 runtime_log.err
[2025-11-26 12:56:51] -rw-r--r--. 1 boinc boinc     21487 Nov 26 12:56 stderr.txt
[2025-11-26 12:56:51] HITS file was successfully produced:
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc 917714727 Nov 26 12:53 shared/HITS.pool.root.1
[2025-11-26 12:56:51]  *** Contents of shared directory: ***
[2025-11-26 12:56:51] total 1309560
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc 409203963 Nov 25 14:00 ATLAS.root_0
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc     15847 Nov 25 14:00 start_atlas.sh
[2025-11-26 12:56:51] -rw-r--r--. 2 boinc boinc    590099 Nov 25 14:00 input.tar.gz
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc 917714727 Nov 26 12:53 HITS.pool.root.1
[2025-11-26 12:56:51] -rw-------. 1 boinc boinc  13455360 Nov 26 12:56 result.tar.gz
12:56:52 (26320): run_atlas exited; CPU time 303388.202486
12:56:52 (26320): called boinc_finish(0)

</stderr_txt>
]]>

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