Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:01:05 (339420): wrapper (7.7.26015): starting
12:01:05 (339420): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 12:01:05] Arguments: --nthreads 4
[2025-11-25 12:01:05] Threads: 4
[2025-11-25 12:01:05] Checking for CVMFS
[2025-11-25 12:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:01:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:01:05] 2.9.2.0 3127036 9810 90448 153279 0 81 34349951 36864001 0 130560 0 3913016 99.934 511753 6859 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 12:01:05] CVMFS is ok
[2025-11-25 12:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:01:05] Further information can be found at the LHC@home message board.
[2025-11-25 12:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:01:05] Checking for apptainer binary...
[2025-11-25 12:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:01:05] Running /usr/bin/apptainer --version
[2025-11-25 12:01:05] apptainer version 1.4.1-1.1
[2025-11-25 12:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:01:05] thA334
[2025-11-25 12:01:05] apptainer works
[2025-11-25 12:01:05] Set ATHENA_PROC_NUMBER=4
[2025-11-25 12:01:05] Set ATHENA_CORE_NUMBER=4
[2025-11-25 12:01:05] Starting ATLAS job with PandaID=6894275574
[2025-11-25 12:01:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:44:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:44:12] 2025-11-25 17:43:41,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:44:12] 2025-11-25 17:43:41,640 | INFO     | aborting loop
[2025-11-25 18:44:12] 2025-11-25 17:43:41,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:44:12] 2025-11-25 17:43:42,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:44:12] 2025-11-25 17:43:42,322 | INFO     | all data control threads have been joined
[2025-11-25 18:44:12] 2025-11-25 17:43:42,513 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:44:12] 2025-11-25 17:43:42,645 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:42,646 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:42,646 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:42,717 | INFO     | all payload control threads have been joined
[2025-11-25 18:44:12] 2025-11-25 17:43:42,718 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:42,861 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,286 | INFO     | all job control threads have been joined
[2025-11-25 18:44:12] 2025-11-25 17:43:43,328 | INFO     | [data] control thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,444 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,646 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,653 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,723 | INFO     | [payload] control thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,727 | INFO     | [job] validate thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:43,891 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:44,287 | INFO     | [job] control thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:46,150 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:52,110 | INFO     | job.realtimelogging is not enabled
[2025-11-25 18:44:12] 2025-11-25 17:43:53,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:44:12] 2025-11-25 17:43:53,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410841364288)>', '<ExcThread(monitor, started 140409393116928)>']
[2025-11-25 18:44:12] 2025-11-25 17:43:58,865 | INFO     | all workflow threads have been joined
[2025-11-25 18:44:12] 2025-11-25 17:43:58,866 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:44:12] 2025-11-25 17:43:58,866 | INFO     | traces error code: 0
[2025-11-25 18:44:12] 2025-11-25 17:43:58,866 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:44:12] 2025-11-25 17:44:12,689 | INFO     | PID=343213 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 18:44:12] 2025-11-25 17:44:12,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:44:12] 2025-11-25 17:44:12,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:44:12] 2025-11-25 17:44:12,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:44:12] 2025-11-25 17:44:12,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:44:12] 2025-11-25 17:44:12,690 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 18:44:12] 2025-11-25 17:44:12,690 | INFO     | [monitor] control thread has ended
[2025-11-25 18:44:12] 2025-11-25 17:44:12,753 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:44:12] 2025-11-25 17:44:12,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:44:12] 2025-11-25 17:44:12,760 [wrapper] pilotpid: 343213
[2025-11-25 18:44:12] 2025-11-25 17:44:12,764 [wrapper] Pilot exit status: 0
[2025-11-25 18:44:12] 2025-11-25 17:44:12,775 [wrapper] pandaids: 6894275574
[2025-11-25 18:44:12] 2025-11-25 17:44:12,795 [wrapper] cleanup supervisor_pilot  391999 343214
[2025-11-25 18:44:12] 2025-11-25 17:44:12,799 [wrapper] Test setup, not cleaning
[2025-11-25 18:44:12] 2025-11-25 17:44:12,802 [wrapper] apfmon messages muted
[2025-11-25 18:44:12] 2025-11-25 17:44:12,806 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:44:12] 2025-11-25 17:44:12,809 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:44:12]  *** Error codes and diagnostics ***
[2025-11-25 18:44:12]     "exeErrorCode": 0,
[2025-11-25 18:44:12]     "exeErrorDiag": "",
[2025-11-25 18:44:12]     "pilotErrorCode": 0,
[2025-11-25 18:44:12]     "pilotErrorDiag": "",
[2025-11-25 18:44:12]  *** Listing of results directory ***
[2025-11-25 18:44:12] total 1310116
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc    576529 Nov 21 08:07 pilot3.tar.gz
[2025-11-25 18:44:12] -rwx------ 1 boinc boinc     36292 Nov 21 08:39 runpilot2-wrapper.sh
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      5112 Nov 21 08:39 queuedata.json
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc       100 Nov 25 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:44:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 12:01 run_atlas
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc       105 Nov 25 12:01 job.xml
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc 412261418 Nov 25 12:01 EVNT.47493127._002312.pool.root.1
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc    590100 Nov 25 12:01 input.tar.gz
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:01 start_atlas.sh
[2025-11-25 18:44:12] drwxrwx--x 2 boinc boinc      4096 Nov 25 12:01 shared
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:01 boinc_setup_complete
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      6369 Nov 25 12:01 init_data.xml
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc         0 Nov 25 12:01 boinc_lockfile
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      2785 Nov 25 12:01 pandaJob.out
[2025-11-25 18:44:12] -rw------- 1 boinc boinc    991894 Nov 25 12:01 agis_schedconf.cvmfs.json
[2025-11-25 18:44:12] drwx------ 5 boinc boinc      4096 Nov 25 12:01 pilot3
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc       532 Nov 25 18:40 boinc_task_state.xml
[2025-11-25 18:44:12] -rw------- 1 boinc boinc 916084223 Nov 25 18:43 HITS.47533967._002839.pool.root.1
[2025-11-25 18:44:12] -rw------- 1 boinc boinc        95 Nov 25 18:43 pilot_heartbeat.json
[2025-11-25 18:44:12] -rw------- 1 boinc boinc      1029 Nov 25 18:43 memory_monitor_summary.json
[2025-11-25 18:44:12] -rw------- 1 boinc boinc   1516240 Nov 25 18:43 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:44:12] -rw------- 1 boinc boinc   1251390 Nov 25 18:43 log.47533967._002839.job.log.tgz.1
[2025-11-25 18:44:12] -rw------- 1 boinc boinc      8570 Nov 25 18:43 heartbeat.json
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      8192 Nov 25 18:43 boinc_mmap_file
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc        28 Nov 25 18:43 wrapper_checkpoint.txt
[2025-11-25 18:44:12] -rw------- 1 boinc boinc       816 Nov 25 18:44 pilotlog.txt
[2025-11-25 18:44:12] -rw------- 1 boinc boinc   3403344 Nov 25 18:44 log.47533967._002839.job.log.1
[2025-11-25 18:44:12] -rw------- 1 boinc boinc       353 Nov 25 18:44 output.list
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc       620 Nov 25 18:44 runtime_log
[2025-11-25 18:44:12] -rw------- 1 boinc boinc   4679680 Nov 25 18:44 result.tar.gz
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      8898 Nov 25 18:44 runtime_log.err
[2025-11-25 18:44:12] -rw------- 1 boinc boinc       665 Nov 25 18:44 Eh1NDmCvag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcCJKDmOIqmGm.diag
[2025-11-25 18:44:12] -rw-r--r-- 1 boinc boinc      7248 Nov 25 18:44 stderr.txt
[2025-11-25 18:44:12] HITS file was successfully produced:
[2025-11-25 18:44:12] -rw------- 1 boinc boinc 916084223 Nov 25 18:43 shared/HITS.pool.root.1
[2025-11-25 18:44:12]  *** Contents of shared directory: ***
[2025-11-25 18:44:12] total 1302392
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc 412261418 Nov 25 12:01 ATLAS.root_0
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc    590100 Nov 25 12:01 input.tar.gz
[2025-11-25 18:44:12] -rw-r--r-- 2 boinc boinc     15847 Nov 25 12:01 start_atlas.sh
[2025-11-25 18:44:12] -rw------- 1 boinc boinc 916084223 Nov 25 18:43 HITS.pool.root.1
[2025-11-25 18:44:12] -rw------- 1 boinc boinc   4679680 Nov 25 18:44 result.tar.gz
18:44:14 (339420): run_atlas exited; CPU time 94661.641577
18:44:14 (339420): called boinc_finish(0)

</stderr_txt>
]]>

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